data_6A5
#

_chem_comp.id                                   6A5
_chem_comp.name                                 "Sa-(+)-(6-(aminomethyl)-5-(2,4-dichlorophenyl)-7-methylimidazo[1,2-a]pyrimidin-2-yl)(morpholino)methanone"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H19 Cl2 N5 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;1-[5-(2,4-dichlorophenyl)-7-methyl-2-(morpholin-4-ylcarbonyl)imidazo[1,2-a]pyrimidin-6-yl]methanamine;
6-(aminomethyl)-5-(2,4-dichlorophenyl)-7-methyl-2-(morpholin-4-ylcarbonyl)imidazo[1,2-a]pyrimidin-4-ium-1-ide
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-06-28
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       420.292
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6A5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3NOX
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6A5  C1    C1    C   0  1  Y  N  N   1.424   3.523   0.890  -1.132  -0.882   0.371  C1    6A5   1  
6A5  C2    C2    C   0  1  Y  N  N   2.307   4.570   0.962  -1.455  -2.209   0.566  C2    6A5   2  
6A5  C3    C3    C   0  1  Y  N  N   3.710   4.309   0.817  -0.439  -3.168   0.529  C3    6A5   3  
6A5  N4    N4    N   0  1  Y  N  N   4.259   3.131   0.605   0.806  -2.813   0.312  N4    6A5   4  
6A5  N5    N5    N   0  1  Y  N  N   1.956   2.281   0.703   0.184  -0.548   0.146  N5    6A5   5  
6A5  C6    C6    C   0  1  Y  N  N   3.375   2.064   0.568   1.144  -1.529   0.120  C6    6A5   6  
6A5  N7    N7    N   0  1  Y  N  N   3.661   0.754   0.426   2.313  -0.954  -0.111  N7    6A5   7  
6A5  C8    C8    C   0  1  Y  N  N   2.407   0.152   0.474   2.134   0.375  -0.235  C8    6A5   8  
6A5  C9    C9    C   0  1  Y  N  N   1.349   1.029   0.632   0.805   0.642  -0.076  C9    6A5   9  
6A5  C10   C10   C   0  1  N  N  N   2.298  -1.281   0.309   3.192   1.370  -0.497  C10   6A5  10  
6A5  O11   O11   O   0  1  N  N  N   1.636  -1.752  -0.627   2.896   2.530  -0.710  O11   6A5  11  
6A5  N12   N12   N   0  1  N  N  N   2.913  -2.057   1.258   4.486   0.993  -0.499  N12   6A5  12  
6A5  C13   C13   C   0  1  N  N  N   4.710   5.405   0.934  -0.776  -4.622   0.740  C13   6A5  13  
6A5  C14   C14   C   0  1  Y  N  N  -0.020   3.670   0.923  -2.178   0.159   0.396  C14   6A5  14  
6A5  C15   C15   C   0  1  N  N  N   1.829   5.952   1.239  -2.884  -2.619   0.816  C15   6A5  15  
6A5  N16   N16   N   0  1  N  N  N   2.483   6.384   2.452  -3.507  -3.020  -0.453  N16   6A5  16  
6A5  C17   C17   C   0  1  Y  N  N  -0.687   3.908  -0.278  -2.301   1.003   1.503  C17   6A5  17  
6A5  C18   C18   C   0  1  Y  N  N  -2.056   4.140  -0.274  -3.280   1.973   1.520  C18   6A5  18  
6A5  C19   C19   C   0  1  Y  N  N  -2.733   4.116   0.938  -4.142   2.113   0.445  C19   6A5  19  
6A5  C20   C20   C   0  1  Y  N  N  -2.101   3.861   2.145  -4.027   1.280  -0.655  C20   6A5  20  
6A5  C21   C21   C   0  1  Y  N  N  -0.733   3.640   2.114  -3.047   0.308  -0.689  C21   6A5  21  
6A5  CL22  CL22  CL  0  0  N  N  N   0.101   3.393   3.581  -2.899  -0.731  -2.072  CL22  6A5  22  
6A5  CL23  CL23  CL  0  0  N  N  N  -4.404   4.468   0.949  -5.372   3.337   0.477  CL23  6A5  23  
6A5  C24   C24   C   0  1  N  N  N   3.762  -1.557   2.359   5.562   1.981  -0.679  C24   6A5  24  
6A5  C25   C25   C   0  1  N  N  N   3.380  -2.327   3.642   6.591   1.783   0.440  C25   6A5  25  
6A5  O26   O26   O   0  1  N  N  N   3.480  -3.710   3.429   6.989   0.410   0.477  O26   6A5  26  
6A5  C27   C27   C   0  1  N  N  N   2.596  -4.152   2.430   5.928  -0.498   0.780  C27   6A5  27  
6A5  C28   C28   C   0  1  N  N  N   2.967  -3.507   1.089   4.865  -0.417  -0.316  C28   6A5  28  
6A5  H17   H17   H   0  1  N  N  N  -0.140   3.912  -1.209  -1.631   0.895   2.342  H17   6A5  29  
6A5  H18   H18   H   0  1  N  N  N  -2.584   4.335  -1.196  -3.376   2.626   2.375  H18   6A5  30  
6A5  H20   H20   H   0  1  N  N  N  -2.653   3.836   3.073  -4.702   1.393  -1.490  H20   6A5  31  
6A5  H9    H9    H   0  1  N  N  N   0.296   0.797   0.688   0.336   1.614  -0.119  H9    6A5  32  
6A5  H24   H24   H   0  1  N  N  N   4.823  -1.725   2.122   6.040   1.831  -1.647  H24   6A5  33  
6A5  HN16  HN16  H   0  0  N  N  N   2.189   7.313   2.677  -2.978  -3.754  -0.899  HN16  6A5  34  
6A5  H24A  H24A  H   0  0  N  N  N   3.594  -0.479   2.503   5.149   2.988  -0.624  H24A  6A5  35  
6A5  HN1A  HN1A  H   0  0  N  N  N   2.239   5.767   3.200  -4.466  -3.299  -0.312  HN1A  6A5  36  
6A5  H28   H28   H   0  1  N  N  N   2.256  -3.822   0.311   3.990  -0.997  -0.022  H28   6A5  37  
6A5  H28A  H28A  H   0  0  N  N  N   3.981  -3.814   0.792   5.271  -0.812  -1.248  H28A  6A5  38  
6A5  H25   H25   H   0  1  N  N  N   4.062  -2.036   4.455   7.463   2.409   0.248  H25   6A5  39  
6A5  H25A  H25A  H   0  0  N  N  N   2.345  -2.078   3.918   6.147   2.059   1.396  H25A  6A5  40  
6A5  H27   H27   H   0  1  N  N  N   2.664  -5.246   2.340   6.321  -1.514   0.832  H27   6A5  41  
6A5  H27A  H27A  H   0  0  N  N  N   1.568  -3.868   2.700   5.481  -0.231   1.737  H27A  6A5  42  
6A5  H13   H13   H   0  1  N  N  N   5.723   4.992   0.816  -1.001  -5.086  -0.220  H13   6A5  43  
6A5  H13A  H13A  H   0  0  N  N  N   4.526   6.154   0.150   0.073  -5.128   1.198  H13A  6A5  44  
6A5  H13B  H13B  H   0  0  N  N  N   4.620   5.879   1.923  -1.644  -4.702   1.395  H13B  6A5  45  
6A5  H15   H15   H   0  1  N  N  N   2.088   6.621   0.405  -2.905  -3.457   1.512  H15   6A5  46  
6A5  H15A  H15A  H   0  0  N  N  N   0.737   5.961   1.369  -3.433  -1.779   1.241  H15A  6A5  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6A5  C1   C2    DOUB  Y  N   1  
6A5  C1   N5    SING  Y  N   2  
6A5  C1   C14   SING  Y  N   3  
6A5  C2   C3    SING  Y  N   4  
6A5  C2   C15   SING  N  N   5  
6A5  C3   N4    DOUB  Y  N   6  
6A5  C3   C13   SING  N  N   7  
6A5  N4   C6    SING  Y  N   8  
6A5  N5   C6    SING  Y  N   9  
6A5  N5   C9    SING  Y  N  10  
6A5  C6   N7    DOUB  Y  N  11  
6A5  N7   C8    SING  Y  N  12  
6A5  C8   C9    DOUB  Y  N  13  
6A5  C8   C10   SING  N  N  14  
6A5  C9   H9    SING  N  N  15  
6A5  C10  O11   DOUB  N  N  16  
6A5  C10  N12   SING  N  N  17  
6A5  N12  C24   SING  N  N  18  
6A5  N12  C28   SING  N  N  19  
6A5  C13  H13   SING  N  N  20  
6A5  C13  H13A  SING  N  N  21  
6A5  C13  H13B  SING  N  N  22  
6A5  C14  C17   DOUB  Y  N  23  
6A5  C14  C21   SING  Y  N  24  
6A5  C15  N16   SING  N  N  25  
6A5  C15  H15   SING  N  N  26  
6A5  C15  H15A  SING  N  N  27  
6A5  N16  HN16  SING  N  N  28  
6A5  N16  HN1A  SING  N  N  29  
6A5  C17  C18   SING  Y  N  30  
6A5  C17  H17   SING  N  N  31  
6A5  C18  C19   DOUB  Y  N  32  
6A5  C18  H18   SING  N  N  33  
6A5  C19  C20   SING  Y  N  34  
6A5  C19  CL23  SING  N  N  35  
6A5  C20  C21   DOUB  Y  N  36  
6A5  C20  H20   SING  N  N  37  
6A5  C21  CL22  SING  N  N  38  
6A5  C24  C25   SING  N  N  39  
6A5  C24  H24   SING  N  N  40  
6A5  C24  H24A  SING  N  N  41  
6A5  C25  O26   SING  N  N  42  
6A5  C25  H25   SING  N  N  43  
6A5  C25  H25A  SING  N  N  44  
6A5  O26  C27   SING  N  N  45  
6A5  C27  C28   SING  N  N  46  
6A5  C27  H27   SING  N  N  47  
6A5  C27  H27A  SING  N  N  48  
6A5  C28  H28   SING  N  N  49  
6A5  C28  H28A  SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6A5  SMILES            ACDLabs               12.01  "O=C(c2nc3nc(c(c(c1ccc(Cl)cc1Cl)n3c2)CN)C)N4CCOCC4"  
6A5  SMILES_CANONICAL  CACTVS                3.370  "Cc1nc2nc(cn2c(c1CN)c3ccc(Cl)cc3Cl)C(=O)N4CCOCC4"  
6A5  SMILES            CACTVS                3.370  "Cc1nc2nc(cn2c(c1CN)c3ccc(Cl)cc3Cl)C(=O)N4CCOCC4"  
6A5  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "Cc1c(c(n2cc(nc2n1)C(=O)N3CCOCC3)c4ccc(cc4Cl)Cl)CN"  
6A5  SMILES            "OpenEye OEToolkits"  1.7.0  "Cc1c(c(n2cc(nc2n1)C(=O)N3CCOCC3)c4ccc(cc4Cl)Cl)CN"  
6A5  InChI             InChI                 1.03   "InChI=1S/C19H19Cl2N5O2/c1-11-14(9-22)17(13-3-2-12(20)8-15(13)21)26-10-16(24-19(26)23-11)18(27)25-4-6-28-7-5-25/h2-3,8,10H,4-7,9,22H2,1H3"  
6A5  InChIKey          InChI                 1.03   MNRQGIJBOGTUFQ-UHFFFAOYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6A5  "SYSTEMATIC NAME"  ACDLabs               12.01  "[6-(aminomethyl)-5-(2,4-dichlorophenyl)-7-methylimidazo[1,2-a]pyrimidin-2-yl](morpholin-4-yl)methanone"  
6A5  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "[6-(aminomethyl)-5-(2,4-dichlorophenyl)-7-methyl-imidazo[1,2-a]pyrimidin-2-yl]-morpholin-4-yl-methanone"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6A5  "Create component"      2010-06-28  RCSB  
6A5  "Modify aromatic_flag"  2011-06-04  RCSB  
6A5  "Modify descriptor"     2011-06-04  RCSB  
6A5  "Modify synonyms"       2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  6A5  "1-[5-(2,4-dichlorophenyl)-7-methyl-2-(morpholin-4-ylcarbonyl)imidazo[1,2-a]pyrimidin-6-yl]methanamine"          ?  ?  
2  6A5  "6-(aminomethyl)-5-(2,4-dichlorophenyl)-7-methyl-2-(morpholin-4-ylcarbonyl)imidazo[1,2-a]pyrimidin-4-ium-1-ide"  ?  ?  
##
