data_5N5
# 
_chem_comp.id                                    5N5 
_chem_comp.name                                  "5'-amino-5'-deoxyadenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H14 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-01-06 
_chem_comp.pdbx_modified_date                    2012-03-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        266.257 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5N5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3V8Q 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5N5 "O2'" O2* O 0 1 N N N 17.812 10.407 8.243  0.914  -2.337 -0.726 O2* 5N5 1  
5N5 "C2'" C2* C 0 1 N N R 16.651 9.593  8.120  1.426  -1.004 -0.779 C2* 5N5 2  
5N5 "C3'" C3* C 0 1 N N S 15.385 10.390 8.469  2.958  -0.991 -0.556 C3* 5N5 3  
5N5 "O3'" O3* O 0 1 N N N 15.582 11.808 8.306  3.379  -2.192 0.095  O3* 5N5 4  
5N5 "C4'" C4* C 0 1 N N R 15.178 10.032 9.937  3.197  0.228  0.355  C4* 5N5 5  
5N5 "C5'" C5* C 0 1 N N N 13.712 10.239 10.336 4.153  1.209  -0.328 C5* 5N5 6  
5N5 "N5'" N5* N 0 1 N N N 13.587 10.145 11.800 4.468  2.308  0.594  N5* 5N5 7  
5N5 "O4'" O4* O 0 1 N N N 15.490 8.620  9.953  1.922  0.858  0.570  O4* 5N5 8  
5N5 "C1'" C1* C 0 1 N N R 16.716 8.489  9.182  0.916  -0.167 0.422  C1* 5N5 9  
5N5 N9    N9  N 0 1 Y N N 16.813 7.144  8.521  -0.387 0.429  0.118  N9  5N5 10 
5N5 C8    C8  C 0 1 Y N N 15.836 6.505  7.858  -0.606 1.684  -0.368 C8  5N5 11 
5N5 N7    N7  N 0 1 Y N N 16.288 5.330  7.411  -1.883 1.885  -0.520 N7  5N5 12 
5N5 C5    C5  C 0 1 Y N N 17.561 5.213  7.791  -2.562 0.775  -0.143 C5  5N5 13 
5N5 C4    C4  C 0 1 Y N N 17.893 6.365  8.497  -1.610 -0.175 0.265  C4  5N5 14 
5N5 N3    N3  N 0 1 Y N N 19.136 6.498  8.998  -2.025 -1.365 0.687  N3  5N5 15 
5N5 C2    C2  C 0 1 Y N N 20.037 5.539  8.810  -3.308 -1.654 0.723  C2  5N5 16 
5N5 N1    N1  N 0 1 Y N N 19.757 4.429  8.138  -4.239 -0.795 0.349  N1  5N5 17 
5N5 C6    C6  C 0 1 Y N N 18.535 4.229  7.621  -3.920 0.418  -0.091 C6  5N5 18 
5N5 N6    N6  N 0 1 N N N 18.264 3.106  6.950  -4.903 1.309  -0.486 N6  5N5 19 
5N5 H1    H1  H 0 1 N N N 18.582 9.896  8.023  1.275  -2.924 -1.405 H1  5N5 20 
5N5 H2    H2  H 0 1 N N N 16.561 9.153  7.116  1.167  -0.527 -1.724 H2  5N5 21 
5N5 H3    H3  H 0 1 N N N 14.537 10.031 7.868  3.481  -0.867 -1.505 H3  5N5 22 
5N5 H4    H4  H 0 1 N N N 14.781 12.267 8.530  3.198  -2.997 -0.410 H4  5N5 23 
5N5 H5    H5  H 0 1 N N N 15.849 10.615 10.585 3.615  -0.097 1.308  H5  5N5 24 
5N5 H6    H6  H 0 1 N N N 13.377 11.232 10.002 5.071  0.689  -0.602 H6  5N5 25 
5N5 H7    H7  H 0 1 N N N 13.090 9.464  9.864  3.681  1.611  -1.225 H7  5N5 26 
5N5 H8    H8  H 0 1 N N N 12.632 10.280 12.063 4.847  1.955  1.460  H8  5N5 27 
5N5 H9    H9  H 0 1 N N N 13.892 9.242  12.103 5.098  2.969  0.166  H9  5N5 28 
5N5 H11   H11 H 0 1 N N N 17.594 8.652  9.825  0.859  -0.781 1.320  H11 5N5 29 
5N5 H12   H12 H 0 1 N N N 14.836 6.884  7.709  0.166  2.405  -0.592 H12 5N5 30 
5N5 H13   H13 H 0 1 N N N 21.029 5.667  9.217  -3.612 -2.631 1.070  H13 5N5 31 
5N5 H14   H14 H 0 1 N N N 19.078 2.526  6.927  -4.657 2.192  -0.803 H14 5N5 32 
5N5 H15   H15 H 0 1 N N N 17.520 2.617  7.405  -5.837 1.050  -0.445 H15 5N5 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5N5 N6    C6    SING N N 1  
5N5 N7    C5    SING Y N 2  
5N5 N7    C8    DOUB Y N 3  
5N5 C6    C5    DOUB Y N 4  
5N5 C6    N1    SING Y N 5  
5N5 C5    C4    SING Y N 6  
5N5 C8    N9    SING Y N 7  
5N5 "C2'" "O2'" SING N N 8  
5N5 "C2'" "C3'" SING N N 9  
5N5 "C2'" "C1'" SING N N 10 
5N5 N1    C2    DOUB Y N 11 
5N5 "O3'" "C3'" SING N N 12 
5N5 "C3'" "C4'" SING N N 13 
5N5 C4    N9    SING Y N 14 
5N5 C4    N3    DOUB Y N 15 
5N5 N9    "C1'" SING N N 16 
5N5 C2    N3    SING Y N 17 
5N5 "C1'" "O4'" SING N N 18 
5N5 "C4'" "O4'" SING N N 19 
5N5 "C4'" "C5'" SING N N 20 
5N5 "C5'" "N5'" SING N N 21 
5N5 "O2'" H1    SING N N 22 
5N5 "C2'" H2    SING N N 23 
5N5 "C3'" H3    SING N N 24 
5N5 "O3'" H4    SING N N 25 
5N5 "C4'" H5    SING N N 26 
5N5 "C5'" H6    SING N N 27 
5N5 "C5'" H7    SING N N 28 
5N5 "N5'" H8    SING N N 29 
5N5 "N5'" H9    SING N N 30 
5N5 "C1'" H11   SING N N 31 
5N5 C8    H12   SING N N 32 
5N5 C2    H13   SING N N 33 
5N5 N6    H14   SING N N 34 
5N5 N6    H15   SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5N5 SMILES           ACDLabs              12.01 "n2c1c(ncnc1n(c2)C3OC(C(O)C3O)CN)N"                                                                                                       
5N5 InChI            InChI                1.03  "InChI=1S/C10H14N6O3/c11-1-4-6(17)7(18)10(19-4)16-3-15-5-8(12)13-2-14-9(5)16/h2-4,6-7,10,17-18H,1,11H2,(H2,12,13,14)/t4-,6-,7-,10-/m1/s1" 
5N5 InChIKey         InChI                1.03  GVSGUDGNTHCZHI-KQYNXXCUSA-N                                                                                                               
5N5 SMILES_CANONICAL CACTVS               3.370 "NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"                                                                                        
5N5 SMILES           CACTVS               3.370 "NC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"                                                                                             
5N5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN)O)O)N"                                                                                 
5N5 SMILES           "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN)O)O)N"                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5N5 "SYSTEMATIC NAME" ACDLabs              12.01 "5'-amino-5'-deoxyadenosine"                                          
5N5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3S,4R,5R)-2-(aminomethyl)-5-(6-aminopurin-9-yl)oxolane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5N5 "Create component" 2012-01-06 RCSB 
# 
