data_5I5
#

_chem_comp.id                                   5I5
_chem_comp.name                                 "7-(5-DEOXY-BETA-D-RIBOFURANOSYL)-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-4-AMINE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H13 I N4 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;5'-DEOXY-5-IODOTUBERCIDIN;
(2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(METHYL)TETRAHYDROFURAN-3,4-DIOL
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-10-20
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       376.150
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5I5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2I6A
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5I5  N1    N1    N  0  1  Y  N  N   9.204  -23.294  19.115  -2.846   1.155  -4.496  N1    5I5   1  
5I5  C1    C1    C  0  1  Y  N  N   8.719  -23.421  20.371  -1.634   0.721  -4.911  C1    5I5   2  
5I5  C2    C2    C  0  1  Y  N  N   8.567  -22.324  21.216  -0.533   0.842  -4.064  C2    5I5   3  
5I5  C3    C3    C  0  1  Y  N  N   8.959  -21.067  20.670  -0.766   1.416  -2.820  C3    5I5   4  
5I5  N2    N2    N  0  1  Y  N  N   9.436  -20.948  19.408  -1.943   1.866  -2.350  N2    5I5   5  
5I5  C4    C4    C  0  1  Y  N  N   9.556  -22.068  18.669  -2.924   1.693  -3.258  C4    5I5   6  
5I5  C5    C5    C  0  1  Y  N  N   8.113  -22.069  22.568   0.847   0.523  -4.120  C5    5I5   7  
5I5  C6    C6    C  0  1  Y  N  N   8.259  -20.679  22.774   1.411   0.906  -2.922  C6    5I5   8  
5I5  N3    N3    N  0  1  Y  N  N   8.752  -20.079  21.646   0.424   1.450  -2.136  N3    5I5   9  
5I5  I     I     I  0  1  N  N  N   7.400  -23.390  23.953   1.912  -0.347  -5.645  I     5I5  10  
5I5  N4    N4    N  0  1  N  N  N   8.441  -24.681  20.705  -1.524   0.157  -6.195  N4    5I5  11  
5I5  C7    C7    C  0  1  N  N  S   8.015  -16.455  21.747   1.969   0.663   0.677  C7    5I5  12  
5I5  C8    C8    C  0  1  N  N  R   7.610  -17.929  21.538   0.518   0.913   0.310  C8    5I5  13  
5I5  C9    C9    C  0  1  N  N  R   8.967  -18.627  21.466   0.622   1.976  -0.784  C9    5I5  14  
5I5  O3    O3    O  0  1  N  N  N   9.650  -17.992  22.508   1.933   2.574  -0.689  O3    5I5  15  
5I5  C10   C10   C  0  1  N  N  R   9.402  -16.602  22.411   2.595   2.031   0.465  C10   5I5  16  
5I5  O2    O2    O  0  1  N  N  N   8.103  -15.842  20.474   2.143   0.197   1.998  O2    5I5  17  
5I5  O1    O1    O  0  1  N  N  N   6.762  -18.093  20.365  -0.210   1.445   1.415  O1    5I5  18  
5I5  C11   C11   C  0  1  N  N  N   9.453  -15.954  23.796   4.092   1.980   0.223  C11   5I5  19  
5I5  H4    H4    H  0  1  N  N  N   9.954  -21.982  17.669  -3.910   2.031  -2.956  H4    5I5  20  
5I5  H6    H6    H  0  1  N  N  N   8.016  -20.163  23.691   2.429   0.845  -2.557  H6    5I5  21  
5I5  HN41  1HN4  H  0  0  N  N  N   8.371  -25.238  19.877  -1.842  -0.781  -6.349  HN41  5I5  22  
5I5  HN42  2HN4  H  0  0  N  N  N   9.170  -25.040  21.288  -1.045   0.663  -6.915  HN42  5I5  23  
5I5  H7    H7    H  0  1  N  N  N   7.324  -15.843  22.346   2.403  -0.065  -0.019  H7    5I5  24  
5I5  H8    H8    H  0  1  N  N  N   6.980  -18.356  22.332  -0.000   0.001  -0.003  H8    5I5  25  
5I5  H9    H9    H  0  1  N  N  N   9.529  -18.554  20.523  -0.125   2.769  -0.673  H9    5I5  26  
5I5  H10   H10   H  0  1  N  N  N  10.166  -16.089  21.808   2.399   2.693   1.317  H10   5I5  27  
5I5  HO2   HO2   H  0  1  N  N  N   8.123  -14.898  20.577   3.003   0.531   2.294  HO2   5I5  28  
5I5  HO1   HO1   H  0  1  N  N  N   5.852  -18.129  20.634  -1.062   1.768   1.071  HO1   5I5  29  
5I5  H111  1H11  H  0  0  N  N  N   9.465  -16.738  24.568   4.561   2.925   0.512  H111  5I5  30  
5I5  H112  2H11  H  0  0  N  N  N  10.363  -15.342  23.881   4.549   1.176   0.807  H112  5I5  31  
5I5  H113  3H11  H  0  0  N  N  N   8.567  -15.317  23.935   4.304   1.800  -0.835  H113  5I5  32  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5I5  N1   C4    DOUB  Y  N   1  
5I5  N1   C1    SING  Y  N   2  
5I5  C1   N4    SING  N  N   3  
5I5  C1   C2    DOUB  Y  N   4  
5I5  C2   C3    SING  Y  N   5  
5I5  C2   C5    SING  Y  N   6  
5I5  C3   N2    DOUB  Y  N   7  
5I5  C3   N3    SING  Y  N   8  
5I5  N2   C4    SING  Y  N   9  
5I5  C4   H4    SING  N  N  10  
5I5  C5   C6    DOUB  Y  N  11  
5I5  C5   I     SING  N  N  12  
5I5  C6   N3    SING  Y  N  13  
5I5  C6   H6    SING  N  N  14  
5I5  N3   C9    SING  N  N  15  
5I5  N4   HN41  SING  N  N  16  
5I5  N4   HN42  SING  N  N  17  
5I5  C7   O2    SING  N  N  18  
5I5  C7   C8    SING  N  N  19  
5I5  C7   C10   SING  N  N  20  
5I5  C7   H7    SING  N  N  21  
5I5  C8   O1    SING  N  N  22  
5I5  C8   C9    SING  N  N  23  
5I5  C8   H8    SING  N  N  24  
5I5  C9   O3    SING  N  N  25  
5I5  C9   H9    SING  N  N  26  
5I5  O3   C10   SING  N  N  27  
5I5  C10  C11   SING  N  N  28  
5I5  C10  H10   SING  N  N  29  
5I5  O2   HO2   SING  N  N  30  
5I5  O1   HO1   SING  N  N  31  
5I5  C11  H111  SING  N  N  32  
5I5  C11  H112  SING  N  N  33  
5I5  C11  H113  SING  N  N  34  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5I5  SMILES            ACDLabs               10.04  "Ic2c1c(ncnc1n(c2)C3OC(C(O)C3O)C)N"  
5I5  SMILES_CANONICAL  CACTVS                3.341  "C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cc(I)c3c(N)ncnc23"  
5I5  SMILES            CACTVS                3.341  "C[CH]1O[CH]([CH](O)[CH]1O)n2cc(I)c3c(N)ncnc23"  
5I5  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cc(c3c2ncnc3N)I)O)O"  
5I5  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1C(C(C(O1)n2cc(c3c2ncnc3N)I)O)O"  
5I5  InChI             InChI                 1.03   "InChI=1S/C11H13IN4O3/c1-4-7(17)8(18)11(19-4)16-2-5(12)6-9(13)14-3-15-10(6)16/h2-4,7-8,11,17-18H,1H3,(H2,13,14,15)/t4-,7-,8-,11-/m1/s1"  
5I5  InChIKey          InChI                 1.03   NTXUAWGNGBSCRS-TZQXKBMNSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5I5  "SYSTEMATIC NAME"  ACDLabs               10.04  "7-(5-deoxy-beta-D-ribofuranosyl)-5-iodo-7H-pyrrolo[2,3-d]pyrimidin-4-amine"  
5I5  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R,3R,4S,5R)-2-(4-amino-5-iodo-pyrrolo[2,3-d]pyrimidin-7-yl)-5-methyl-oxolane-3,4-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5I5  "Create component"   2006-10-20  RCSB  
5I5  "Modify descriptor"  2011-06-04  RCSB  
5I5  "Modify synonyms"    2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  5I5  "5'-DEOXY-5-IODOTUBERCIDIN"                                                                            ?  ?  
2  5I5  "(2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(METHYL)TETRAHYDROFURAN-3,4-DIOL"  ?  ?  
##
