data_0R5
# 
_chem_comp.id                                    0R5 
_chem_comp.name                                  
;2'-deoxy-5-[(4-ethynylphenyl)ethynyl]uridine 5'-(tetrahydrogen triphosphate)
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H19 N2 O14 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-04-26 
_chem_comp.pdbx_modified_date                    2013-03-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        592.280 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0R5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4ELT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0R5 O2G   O2G O 0 1 N N N 18.486 -13.774 -13.911 7.180   -4.204 -1.729 O2G 0R5 1  
0R5 PG    PG  P 0 1 N N N 17.090 -13.487 -13.480 7.160   -3.438 -0.313 PG  0R5 2  
0R5 O1G   O1G O 0 1 N N N 17.233 -12.188 -12.714 6.859   -4.495 0.864  O1G 0R5 3  
0R5 O3G   O3G O 0 1 N N N 16.032 -13.504 -14.553 8.474   -2.799 -0.079 O3G 0R5 4  
0R5 O3B   O3B O 0 1 N N N 16.462 -14.560 -12.418 6.010   -2.311 -0.329 O3B 0R5 5  
0R5 PB    PB  P 0 1 N N N 16.835 -16.091 -12.022 5.732   -0.985 0.540  PB  0R5 6  
0R5 O1B   O1B O 0 1 N N N 15.692 -16.590 -11.176 5.177   -1.401 1.993  O1B 0R5 7  
0R5 O2B   O2B O 0 1 N N N 17.124 -17.052 -13.141 6.991   -0.222 0.693  O2B 0R5 8  
0R5 O3A   O3A O 0 1 N N N 18.089 -15.819 -11.036 4.639   -0.071 -0.210 O3A 0R5 9  
0R5 PA    PA  P 0 1 N N N 19.662 -16.146 -11.241 4.232   1.484  -0.123 PA  0R5 10 
0R5 O1A   O1A O 0 1 N N N 20.129 -16.170 -12.639 4.255   1.922  1.291  O1A 0R5 11 
0R5 O2A   O2A O 0 1 N N N 20.445 -15.192 -10.361 5.279   2.362  -0.974 O2A 0R5 12 
0R5 "O5'" O5* O 0 1 N N N 19.752 -17.637 -10.675 2.751   1.686  -0.723 O5* 0R5 13 
0R5 "C5'" C5* C 0 1 N N N 19.681 -18.816 -11.488 2.063   2.938  -0.692 C5* 0R5 14 
0R5 "C4'" C4* C 0 1 N N R 18.949 -19.848 -10.633 0.687   2.779  -1.342 C4* 0R5 15 
0R5 "C3'" C3* C 0 1 N N S 17.644 -19.257 -10.095 -0.026  4.147  -1.433 C3* 0R5 16 
0R5 "O3'" O3* O 0 1 N N N 16.558 -19.265 -11.030 0.126   4.704  -2.740 O3* 0R5 17 
0R5 "C2'" C2* C 0 1 N N N 17.370 -20.108 -8.861  -1.509  3.816  -1.154 C2* 0R5 18 
0R5 "O4'" O4* O 0 1 N N N 19.681 -20.197 -9.442  -0.172  1.970  -0.510 O4* 0R5 19 
0R5 "C1'" C1* C 0 1 N N R 18.772 -20.388 -8.340  -1.518  2.288  -0.928 C1* 0R5 20 
0R5 N1    N1  N 0 1 N N N 19.043 -19.431 -7.238  -2.476  1.933  0.121  N1  0R5 21 
0R5 C2    C2  C 0 1 N N N 18.792 -19.855 -5.910  -2.261  2.355  1.378  C2  0R5 22 
0R5 O2    O2  O 0 1 N N N 18.375 -21.028 -5.702  -1.273  3.024  1.614  O2  0R5 23 
0R5 N3    N3  N 0 1 N N N 19.009 -19.026 -4.869  -3.105  2.062  2.382  N3  0R5 24 
0R5 C4    C4  C 0 1 N N N 19.451 -17.768 -5.059  -4.209  1.321  2.149  C4  0R5 25 
0R5 O4    O4  O 0 1 N N N 19.656 -16.994 -4.096  -4.978  1.052  3.054  O4  0R5 26 
0R5 C6    C6  C 0 1 N N N 19.468 -18.175 -7.480  -3.570  1.185  -0.200 C6  0R5 27 
0R5 C5    C5  C 0 1 N N N 19.691 -17.288 -6.463  -4.465  0.847  0.780  C5  0R5 28 
0R5 C5M   C5M C 0 1 N N N 20.133 -16.085 -6.679  -5.624  0.063  0.478  C5M 0R5 29 
0R5 C30   C30 C 0 1 N N N 20.539 -14.982 -6.877  -6.575  -0.580 0.230  C30 0R5 30 
0R5 C31   C31 C 0 1 Y N N 20.931 -13.765 -7.085  -7.734  -1.364 -0.072 C31 0R5 31 
0R5 C36   C36 C 0 1 Y N N 21.771 -13.491 -8.164  -7.963  -1.801 -1.381 C36 0R5 32 
0R5 C35   C35 C 0 1 Y N N 22.237 -12.195 -8.408  -9.069  -2.549 -1.668 C35 0R5 33 
0R5 C34   C34 C 0 1 Y N N 21.866 -11.170 -7.543  -9.973  -2.879 -0.655 C34 0R5 34 
0R5 C37   C37 C 0 1 N N N 22.340 -9.994  -7.763  -11.132 -3.663 -0.957 C37 0R5 35 
0R5 C38   C38 C 0 1 N N N 22.734 -8.779  -7.877  -12.083 -4.306 -1.204 C38 0R5 36 
0R5 C33   C33 C 0 1 Y N N 21.051 -11.441 -6.440  -9.745  -2.443 0.654  C33 0R5 37 
0R5 C32   C32 C 0 1 Y N N 20.581 -12.730 -6.211  -8.637  -1.699 0.944  C32 0R5 38 
0R5 H1    H1  H 0 1 N N N 18.502 -13.933 -14.847 7.850   -4.899 -1.791 H1  0R5 39 
0R5 H2    H2  H 0 1 N N N 16.605 -11.555 -13.043 6.012   -4.952 0.775  H2  0R5 40 
0R5 H3    H3  H 0 1 N N N 15.380 -17.418 -11.521 4.352   -1.905 1.969  H3  0R5 41 
0R5 H4    H4  H 0 1 N N N 21.118 -14.764 -10.877 5.317   2.129  -1.911 H4  0R5 42 
0R5 H5    H5  H 0 1 N N N 19.121 -18.614 -12.413 1.941   3.260  0.342  H5  0R5 43 
0R5 H6    H6  H 0 1 N N N 20.691 -19.171 -11.741 2.639   3.683  -1.239 H6  0R5 44 
0R5 H7    H7  H 0 1 N N N 18.730 -20.741 -11.236 0.785   2.336  -2.333 H7  0R5 45 
0R5 H8    H8  H 0 1 N N N 17.841 -18.225 -9.768  0.361   4.830  -0.677 H8  0R5 46 
0R5 H9    H9  H 0 1 N N N 15.788 -18.884 -10.625 -0.302  5.564  -2.853 H9  0R5 47 
0R5 H10   H10 H 0 1 N N N 16.773 -19.555 -8.121  -1.855  4.336  -0.261 H10 0R5 48 
0R5 H11   H11 H 0 1 N N N 16.851 -21.040 -9.128  -2.127  4.078  -2.013 H11 0R5 49 
0R5 H12   H12 H 0 1 N N N 18.826 -21.421 -7.965  -1.759  1.768  -1.855 H12 0R5 50 
0R5 H13   H13 H 0 1 N N N 18.839 -19.351 -3.939  -2.920  2.384  3.277  H13 0R5 51 
0R5 H14   H14 H 0 1 N N N 19.636 -17.862 -8.500  -3.727  0.858  -1.217 H14 0R5 52 
0R5 H15   H15 H 0 1 N N N 22.067 -14.294 -8.823  -7.265  -1.546 -2.165 H15 0R5 53 
0R5 H16   H16 H 0 1 N N N 22.875 -11.993 -9.255  -9.245  -2.887 -2.679 H16 0R5 54 
0R5 H17   H17 H 0 1 N N N 23.060 -7.775  -7.971  -12.933 -4.881 -1.426 H17 0R5 55 
0R5 H18   H18 H 0 1 N N N 20.785 -10.644 -5.761  -10.444 -2.698 1.436  H18 0R5 56 
0R5 H19   H19 H 0 1 N N N 19.947 -12.932 -5.360  -8.460  -1.366 1.956  H19 0R5 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0R5 O3G   PG    DOUB N N 1  
0R5 O2G   PG    SING N N 2  
0R5 PG    O1G   SING N N 3  
0R5 PG    O3B   SING N N 4  
0R5 O2B   PB    DOUB N N 5  
0R5 O1A   PA    DOUB N N 6  
0R5 O3B   PB    SING N N 7  
0R5 PB    O1B   SING N N 8  
0R5 PB    O3A   SING N N 9  
0R5 "C5'" "O5'" SING N N 10 
0R5 "C5'" "C4'" SING N N 11 
0R5 PA    O3A   SING N N 12 
0R5 PA    "O5'" SING N N 13 
0R5 PA    O2A   SING N N 14 
0R5 "O3'" "C3'" SING N N 15 
0R5 "C4'" "C3'" SING N N 16 
0R5 "C4'" "O4'" SING N N 17 
0R5 "C3'" "C2'" SING N N 18 
0R5 "O4'" "C1'" SING N N 19 
0R5 "C2'" "C1'" SING N N 20 
0R5 C35   C36   DOUB Y N 21 
0R5 C35   C34   SING Y N 22 
0R5 "C1'" N1    SING N N 23 
0R5 C36   C31   SING Y N 24 
0R5 C38   C37   TRIP N N 25 
0R5 C37   C34   SING N N 26 
0R5 C34   C33   DOUB Y N 27 
0R5 C6    N1    SING N N 28 
0R5 C6    C5    DOUB N N 29 
0R5 N1    C2    SING N N 30 
0R5 C31   C30   SING N N 31 
0R5 C31   C32   DOUB Y N 32 
0R5 C30   C5M   TRIP N N 33 
0R5 C5M   C5    SING N N 34 
0R5 C5    C4    SING N N 35 
0R5 C33   C32   SING Y N 36 
0R5 C2    O2    DOUB N N 37 
0R5 C2    N3    SING N N 38 
0R5 C4    N3    SING N N 39 
0R5 C4    O4    DOUB N N 40 
0R5 O2G   H1    SING N N 41 
0R5 O1G   H2    SING N N 42 
0R5 O1B   H3    SING N N 43 
0R5 O2A   H4    SING N N 44 
0R5 "C5'" H5    SING N N 45 
0R5 "C5'" H6    SING N N 46 
0R5 "C4'" H7    SING N N 47 
0R5 "C3'" H8    SING N N 48 
0R5 "O3'" H9    SING N N 49 
0R5 "C2'" H10   SING N N 50 
0R5 "C2'" H11   SING N N 51 
0R5 "C1'" H12   SING N N 52 
0R5 N3    H13   SING N N 53 
0R5 C6    H14   SING N N 54 
0R5 C36   H15   SING N N 55 
0R5 C35   H16   SING N N 56 
0R5 C38   H17   SING N N 57 
0R5 C33   H18   SING N N 58 
0R5 C32   H19   SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0R5 SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(N2C(=O)NC(=O)C(C#Cc1ccc(C#C)cc1)=C2)CC3O" 
0R5 InChI            InChI                1.03  
"InChI=1S/C19H19N2O14P3/c1-2-12-3-5-13(6-4-12)7-8-14-10-21(19(24)20-18(14)23)17-9-15(22)16(33-17)11-32-37(28,29)35-38(30,31)34-36(25,26)27/h1,3-6,10,15-17,22H,9,11H2,(H,28,29)(H,30,31)(H,20,23,24)(H2,25,26,27)/t15-,16+,17+/m0/s1" 
0R5 InChIKey         InChI                1.03  NDHYKBWELLKQHS-GVDBMIGSSA-N 
0R5 SMILES_CANONICAL CACTVS               3.370 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C=C(C#Cc3ccc(cc3)C#C)C(=O)NC2=O" 
0R5 SMILES           CACTVS               3.370 "O[CH]1C[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C=C(C#Cc3ccc(cc3)C#C)C(=O)NC2=O" 
0R5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C#Cc1ccc(cc1)C#CC2=CN(C(=O)NC2=O)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" 
0R5 SMILES           "OpenEye OEToolkits" 1.7.6 "C#Cc1ccc(cc1)C#CC2=CN(C(=O)NC2=O)C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0R5 "SYSTEMATIC NAME" ACDLabs              12.01 
;2'-deoxy-5-[(4-ethynylphenyl)ethynyl]uridine 5'-(tetrahydrogen triphosphate)
;
0R5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,5R)-5-[5-[2-(4-ethynylphenyl)ethynyl]-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0R5 "Create component" 2012-04-26 RCSB 
0R5 "Initial release"  2013-03-27 RCSB 
# 
