data_0P5
# 
_chem_comp.id                                    0P5 
_chem_comp.name                                  "4-{4-[(1H-benzimidazol-2-ylmethyl)amino]-6-(2-chloro-4-methoxyphenoxy)pyrimidin-2-yl}piperazin-2-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H22 Cl N7 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-04-05 
_chem_comp.pdbx_modified_date                    2012-09-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        479.919 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0P5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4EG6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0P5 CL1 CL1 CL 0 0 N N N -41.194 -16.480 -6.963  -2.644 -1.780 -2.446 CL1 0P5 1  
0P5 CAY CAY C  0 1 Y N N -40.109 -15.144 -7.002  -3.593 -1.888 -0.996 CAY 0P5 2  
0P5 CAJ CAJ C  0 1 Y N N -38.743 -15.333 -7.132  -4.969 -1.778 -1.060 CAJ 0P5 3  
0P5 CAZ CAZ C  0 1 Y N N -37.901 -14.220 -7.173  -5.726 -1.865 0.098  CAZ 0P5 4  
0P5 OAV OAV O  0 1 N N N -36.559 -14.364 -7.300  -7.080 -1.757 0.035  OAV 0P5 5  
0P5 CAA CAA C  0 1 N N N -36.163 -15.662 -6.879  -7.797 -1.855 1.268  CAA 0P5 6  
0P5 CAF CAF C  0 1 Y N N -38.437 -12.941 -7.097  -5.103 -2.062 1.322  CAF 0P5 7  
0P5 CAG CAG C  0 1 Y N N -39.809 -12.763 -6.962  -3.727 -2.172 1.387  CAG 0P5 8  
0P5 CBD CBD C  0 1 Y N N -40.641 -13.875 -6.924  -2.970 -2.091 0.228  CBD 0P5 9  
0P5 OAW OAW O  0 1 N N N -41.985 -13.763 -6.778  -1.616 -2.204 0.291  OAW 0P5 10 
0P5 C4  C4  C  0 1 Y N N -42.748 -13.542 -7.871  -0.883 -1.065 0.336  C4  0P5 11 
0P5 C5  C5  C  0 1 Y N N -42.238 -13.149 -9.113  0.504  -1.117 0.277  C5  0P5 12 
0P5 N3  N3  N  0 1 Y N N -44.064 -13.696 -7.722  -1.483 0.119  0.431  N3  0P5 13 
0P5 C2  C2  C  0 1 Y N N -44.895 -13.479 -8.750  -0.775 1.237  0.475  C2  0P5 14 
0P5 N   N   N  0 1 N N N -46.258 -13.664 -8.583  -1.436 2.449  0.575  N   0P5 15 
0P5 CA  CA  C  0 1 N N N -46.804 -13.819 -7.211  -1.255 3.248  -0.644 CA  0P5 16 
0P5 CAM CAM C  0 1 N N N -47.110 -13.752 -9.804  -2.869 2.248  0.844  CAM 0P5 17 
0P5 CAL CAL C  0 1 N N N -48.523 -13.316 -9.464  -3.485 3.589  1.248  CAL 0P5 18 
0P5 NAS NAS N  0 1 N N N -48.994 -14.215 -8.389  -3.124 4.619  0.278  NAS 0P5 19 
0P5 C   C   C  0 1 N N N -48.170 -14.473 -7.289  -2.104 4.486  -0.576 C   0P5 20 
0P5 O   O   O  0 1 N N N -48.553 -15.211 -6.387  -1.853 5.405  -1.328 O   0P5 21 
0P5 N1  N1  N  0 1 Y N N -44.437 -13.110 -9.950  0.549  1.225  0.428  N1  0P5 22 
0P5 C6  C6  C  0 1 Y N N -43.132 -12.940 -10.158 1.216  0.079  0.320  C6  0P5 23 
0P5 NAT NAT N  0 1 N N N -42.713 -12.572 -11.357 2.601  0.075  0.270  NAT 0P5 24 
0P5 CAN CAN C  0 1 N N N -43.655 -12.451 -12.482 3.325  -1.193 0.152  CAN 0P5 25 
0P5 CBC CBC C  0 1 Y N N -43.677 -13.716 -13.322 4.808  -0.923 0.119  CBC 0P5 26 
0P5 NAU NAU N  0 1 Y N N -44.753 -14.180 -13.945 5.631  -0.960 1.201  NAU 0P5 27 
0P5 CBG CBG C  0 1 Y N N -44.421 -15.301 -14.578 6.904  -0.659 0.760  CBG 0P5 28 
0P5 CAI CAI C  0 1 Y N N -45.154 -16.184 -15.365 8.139  -0.539 1.381  CAI 0P5 29 
0P5 CAE CAE C  0 1 Y N N -44.520 -17.295 -15.909 9.250  -0.210 0.633  CAE 0P5 30 
0P5 CAD CAD C  0 1 Y N N -43.166 -17.515 -15.658 9.141  0.002  -0.734 CAD 0P5 31 
0P5 CAH CAH C  0 1 Y N N -42.434 -16.629 -14.875 7.933  -0.111 -1.362 CAH 0P5 32 
0P5 CBF CBF C  0 1 Y N N -43.074 -15.526 -14.331 6.793  -0.444 -0.625 CBF 0P5 33 
0P5 NAR NAR N  0 1 Y N N -42.651 -14.534 -13.558 5.488  -0.627 -0.950 NAR 0P5 34 
0P5 H1  H1  H  0 1 N N N -38.334 -16.330 -7.201  -5.455 -1.624 -2.013 H1  0P5 35 
0P5 H2  H2  H  0 1 N N N -35.073 -15.766 -6.987  -7.471 -1.064 1.942  H2  0P5 36 
0P5 H3  H3  H  0 1 N N N -36.443 -15.807 -5.825  -8.865 -1.753 1.076  H3  0P5 37 
0P5 H4  H4  H  0 1 N N N -36.667 -16.418 -7.499  -7.602 -2.825 1.725  H4  0P5 38 
0P5 H5  H5  H  0 1 N N N -37.785 -12.081 -7.143  -5.693 -2.130 2.224  H5  0P5 39 
0P5 H6  H6  H  0 1 N N N -40.225 -11.769 -6.887  -3.242 -2.326 2.339  H6  0P5 40 
0P5 H7  H7  H  0 1 N N N -41.177 -13.011 -9.257  1.018  -2.064 0.199  H7  0P5 41 
0P5 H8  H8  H  0 1 N N N -46.128 -14.449 -6.615  -0.207 3.532  -0.739 H8  0P5 42 
0P5 H9  H9  H  0 1 N N N -46.896 -12.830 -6.738  -1.550 2.657  -1.511 H9  0P5 43 
0P5 H10 H10 H  0 1 N N N -47.124 -14.790 -10.168 -3.360 1.876  -0.055 H10 0P5 44 
0P5 H11 H11 H  0 1 N N N -46.701 -13.095 -10.585 -2.992 1.530  1.654  H11 0P5 45 
0P5 H12 H12 H  0 1 N N N -48.525 -12.273 -9.115  -4.570 3.492  1.285  H12 0P5 46 
0P5 H13 H13 H  0 1 N N N -49.172 -13.408 -10.348 -3.116 3.874  2.233  H13 0P5 47 
0P5 H14 H14 H  0 1 N N N -49.899 -14.637 -8.448  -3.647 5.435  0.253  H14 0P5 48 
0P5 H15 H15 H  0 1 N N N -42.022 -13.239 -11.635 3.090  0.911  0.314  H15 0P5 49 
0P5 H16 H16 H  0 1 N N N -43.350 -11.605 -13.116 3.090  -1.827 1.007  H16 0P5 50 
0P5 H17 H17 H  0 1 N N N -44.664 -12.266 -12.086 3.027  -1.697 -0.767 H17 0P5 51 
0P5 H18 H18 H  0 1 N N N -45.660 -13.758 -13.939 5.371  -1.160 2.114  H18 0P5 52 
0P5 H19 H19 H  0 1 N N N -46.203 -16.008 -15.551 8.230  -0.702 2.444  H19 0P5 53 
0P5 H20 H20 H  0 1 N N N -45.075 -17.987 -16.525 10.212 -0.116 1.115  H20 0P5 54 
0P5 H21 H21 H  0 1 N N N -42.680 -18.384 -16.077 10.019 0.259  -1.307 H21 0P5 55 
0P5 H22 H22 H  0 1 N N N -41.383 -16.798 -14.693 7.859  0.056  -2.426 H22 0P5 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0P5 CAE CAD SING Y N 1  
0P5 CAE CAI DOUB Y N 2  
0P5 CAD CAH DOUB Y N 3  
0P5 CAI CBG SING Y N 4  
0P5 CAH CBF SING Y N 5  
0P5 CBG CBF DOUB Y N 6  
0P5 CBG NAU SING Y N 7  
0P5 CBF NAR SING Y N 8  
0P5 NAU CBC SING Y N 9  
0P5 NAR CBC DOUB Y N 10 
0P5 CBC CAN SING N N 11 
0P5 CAN NAT SING N N 12 
0P5 NAT C6  SING N N 13 
0P5 C6  N1  DOUB Y N 14 
0P5 C6  C5  SING Y N 15 
0P5 N1  C2  SING Y N 16 
0P5 CAM CAL SING N N 17 
0P5 CAM N   SING N N 18 
0P5 CAL NAS SING N N 19 
0P5 C5  C4  DOUB Y N 20 
0P5 C2  N   SING N N 21 
0P5 C2  N3  DOUB Y N 22 
0P5 N   CA  SING N N 23 
0P5 NAS C   SING N N 24 
0P5 C4  N3  SING Y N 25 
0P5 C4  OAW SING N N 26 
0P5 OAV CAZ SING N N 27 
0P5 OAV CAA SING N N 28 
0P5 C   CA  SING N N 29 
0P5 C   O   DOUB N N 30 
0P5 CAZ CAJ DOUB Y N 31 
0P5 CAZ CAF SING Y N 32 
0P5 CAJ CAY SING Y N 33 
0P5 CAF CAG DOUB Y N 34 
0P5 CAY CL1 SING N N 35 
0P5 CAY CBD DOUB Y N 36 
0P5 CAG CBD SING Y N 37 
0P5 CBD OAW SING N N 38 
0P5 CAJ H1  SING N N 39 
0P5 CAA H2  SING N N 40 
0P5 CAA H3  SING N N 41 
0P5 CAA H4  SING N N 42 
0P5 CAF H5  SING N N 43 
0P5 CAG H6  SING N N 44 
0P5 C5  H7  SING N N 45 
0P5 CA  H8  SING N N 46 
0P5 CA  H9  SING N N 47 
0P5 CAM H10 SING N N 48 
0P5 CAM H11 SING N N 49 
0P5 CAL H12 SING N N 50 
0P5 CAL H13 SING N N 51 
0P5 NAS H14 SING N N 52 
0P5 NAT H15 SING N N 53 
0P5 CAN H16 SING N N 54 
0P5 CAN H17 SING N N 55 
0P5 NAU H18 SING N N 56 
0P5 CAI H19 SING N N 57 
0P5 CAE H20 SING N N 58 
0P5 CAD H21 SING N N 59 
0P5 CAH H22 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0P5 SMILES           ACDLabs              12.01 "Clc5cc(OC)ccc5Oc3nc(nc(NCc2nc1ccccc1n2)c3)N4CC(=O)NCC4"                                                                                                                                        
0P5 InChI            InChI                1.03  "InChI=1S/C23H22ClN7O3/c1-33-14-6-7-18(15(24)10-14)34-22-11-19(29-23(30-22)31-9-8-25-21(32)13-31)26-12-20-27-16-4-2-3-5-17(16)28-20/h2-7,10-11H,8-9,12-13H2,1H3,(H,25,32)(H,27,28)(H,26,29,30)" 
0P5 InChIKey         InChI                1.03  CWWLCYZCSRQXMN-UHFFFAOYSA-N                                                                                                                                                                     
0P5 SMILES_CANONICAL CACTVS               3.370 "COc1ccc(Oc2cc(NCc3[nH]c4ccccc4n3)nc(n2)N5CCNC(=O)C5)c(Cl)c1"                                                                                                                                   
0P5 SMILES           CACTVS               3.370 "COc1ccc(Oc2cc(NCc3[nH]c4ccccc4n3)nc(n2)N5CCNC(=O)C5)c(Cl)c1"                                                                                                                                   
0P5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "COc1ccc(c(c1)Cl)Oc2cc(nc(n2)N3CCNC(=O)C3)NCc4[nH]c5ccccc5n4"                                                                                                                                   
0P5 SMILES           "OpenEye OEToolkits" 1.7.6 "COc1ccc(c(c1)Cl)Oc2cc(nc(n2)N3CCNC(=O)C3)NCc4[nH]c5ccccc5n4"                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0P5 "SYSTEMATIC NAME" ACDLabs              12.01 "4-{4-[(1H-benzimidazol-2-ylmethyl)amino]-6-(2-chloro-4-methoxyphenoxy)pyrimidin-2-yl}piperazin-2-one"   
0P5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "4-[4-(1H-benzimidazol-2-ylmethylamino)-6-(2-chloranyl-4-methoxy-phenoxy)pyrimidin-2-yl]piperazin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0P5 "Create component" 2012-04-05 RCSB 
0P5 "Initial release"  2012-09-07 RCSB 
# 
