data_0L5
# 
_chem_comp.id                                    0L5 
_chem_comp.name                                  
;2'-deoxy-5-{5-[(10-hydroxydecanoyl)amino]pent-1-yn-1-yl}uridine 5'-(tetrahydrogen triphosphate)
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H40 N3 O16 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-02-08 
_chem_comp.pdbx_modified_date                    2012-05-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        719.506 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0L5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4DFK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0L5 O36   O36 O 0 1 N N N 22.546 -10.104 -4.458  8.587  -1.616 2.128  O36 DTX 1  
0L5 C35   C35 C 0 1 N N N 21.558 -10.485 -3.844  7.987  -1.132 1.192  C35 DTX 2  
0L5 C37   C37 C 0 1 N N N 21.045 -9.705  -2.646  8.690  -0.186 0.253  C37 DTX 3  
0L5 C38   C38 C 0 1 N N N 20.681 -8.283  -3.077  10.142 -0.008 0.701  C38 DTX 4  
0L5 C39   C39 C 0 1 N N N 20.936 -7.219  -2.000  10.856 0.951  -0.253 C39 DTX 5  
0L5 C40   C40 C 0 1 N N N 20.075 -7.350  -0.749  12.309 1.129  0.196  C40 DTX 6  
0L5 C41   C41 C 0 1 N N N 19.205 -6.115  -0.518  13.023 2.089  -0.758 C41 DTX 7  
0L5 C42   C42 C 0 1 N N N 19.873 -4.810  -0.944  14.475 2.267  -0.310 C42 DTX 8  
0L5 C43   C43 C 0 1 N N N 18.836 -3.695  -1.056  15.189 3.227  -1.264 C43 DTX 9  
0L5 C44   C44 C 0 1 N N N 19.464 -2.368  -1.468  16.641 3.404  -0.815 C44 DTX 10 
0L5 C45   C45 C 0 1 N N N 18.395 -1.354  -1.861  17.355 4.364  -1.769 C45 DTX 11 
0L5 O46   O46 O 0 1 N N N 19.015 -0.127  -2.264  18.712 4.530  -1.350 O46 DTX 12 
0L5 N34   N34 N 0 1 N N N 20.891 -11.587 -4.194  6.691  -1.444 0.989  N34 DTX 13 
0L5 C33   C33 C 0 1 N N N 21.442 -12.574 -5.115  6.009  -2.367 1.899  C33 DTX 14 
0L5 C32   C32 C 0 1 N N N 20.693 -12.681 -6.441  4.558  -2.549 1.447  C32 DTX 15 
0L5 C31   C31 C 0 1 N N N 21.249 -13.795 -7.324  3.846  -3.514 2.397  C31 DTX 16 
0L5 C30   C30 C 0 1 N N N 20.654 -15.107 -6.981  2.451  -3.689 1.963  C30 DTX 17 
0L5 C29   C29 C 0 1 N N N 20.194 -16.179 -6.747  1.337  -3.829 1.617  C29 DTX 18 
0L5 C5    C5  C 0 1 N N N 19.692 -17.349 -6.490  -0.020 -3.999 1.194  C5  DTX 19 
0L5 C6    C6  C 0 1 N N N 19.406 -18.257 -7.497  -0.497 -3.352 0.090  C6  DTX 20 
0L5 N1    N1  N 0 1 N N N 18.880 -19.462 -7.214  -1.796 -3.535 -0.287 N1  DTX 21 
0L5 C2    C2  C 0 1 N N N 18.582 -19.802 -5.875  -2.618 -4.340 0.405  C2  DTX 22 
0L5 O2    O2  O 0 1 N N N 18.086 -20.928 -5.626  -3.767 -4.473 0.031  O2  DTX 23 
0L5 N3    N3  N 0 1 N N N 18.831 -18.947 -4.870  -2.207 -5.004 1.500  N3  DTX 24 
0L5 C4    C4  C 0 1 N N N 19.365 -17.742 -5.096  -0.936 -4.880 1.934  C4  DTX 25 
0L5 O4    O4  O 0 1 N N N 19.595 -16.962 -4.144  -0.556 -5.481 2.922  O4  DTX 26 
0L5 "C1'" C1* C 0 1 N N R 18.568 -20.436 -8.286  -2.303 -2.839 -1.472 C1* DTX 27 
0L5 "O4'" O4* O 0 1 N N N 19.452 -20.237 -9.396  -3.518 -2.126 -1.154 O4* DTX 28 
0L5 "C4'" C4* C 0 1 N N R 18.705 -19.907 -10.582 -4.177 -1.913 -2.421 C4* DTX 29 
0L5 "C3'" C3* C 0 1 N N S 17.384 -19.355 -10.071 -3.978 -3.234 -3.197 C3* DTX 30 
0L5 "O3'" O3* O 0 1 N N N 16.296 -19.509 -11.006 -3.759 -2.971 -4.584 O3* DTX 31 
0L5 "C2'" C2* C 0 1 N N N 17.158 -20.157 -8.800  -2.714 -3.857 -2.559 C2* DTX 32 
0L5 "C5'" C5* C 0 1 N N N 19.465 -18.923 -11.473 -5.668 -1.642 -2.205 C5* DTX 33 
0L5 "O5'" O5* O 0 1 N N N 19.704 -17.706 -10.766 -5.835 -0.363 -1.591 O5* DTX 34 
0L5 PA    PA  P 0 1 N N N 19.524 -16.283 -11.495 -7.277 0.248  -1.217 PA  DTX 35 
0L5 O1A   O1A O 0 1 N N N 20.202 -15.198 -10.689 -8.114 0.512  -2.567 O1A DTX 36 
0L5 O2A   O2A O 0 1 N N N 19.802 -16.381 -12.981 -8.012 -0.709 -0.360 O2A DTX 37 
0L5 O3A   O3A O 0 1 N N N 17.935 -16.090 -11.235 -7.083 1.637  -0.426 O3A DTX 38 
0L5 PB    PB  P 0 1 N N N 16.735 -16.301 -12.310 -8.022 2.511  0.547  PB  DTX 39 
0L5 O1B   O1B O 0 1 N N N 17.199 -17.095 -13.518 -9.408 2.506  0.028  O1B DTX 40 
0L5 O2B   O2B O 0 1 N N N 15.594 -16.850 -11.484 -8.000 1.877  2.026  O2B DTX 41 
0L5 O3B   O3B O 0 1 N N N 16.357 -14.760 -12.630 -7.475 4.024  0.603  O3B DTX 42 
0L5 PG    PG  P 0 1 N N N 16.889 -13.830 -13.846 -8.097 5.420  1.112  PG  DTX 43 
0L5 O1G   O1G O 0 1 N N N 15.662 -13.573 -14.679 -9.523 5.496  0.723  O1G DTX 44 
0L5 O3G   O3G O 0 1 N N N 17.399 -12.590 -13.146 -7.972 5.510  2.714  O3G DTX 45 
0L5 O2G   O2G O 0 1 N N N 17.992 -14.604 -14.555 -7.292 6.642  0.441  O2G DTX 46 
0L5 H1    H1  H 0 1 N N N 20.153 -10.204 -2.239  8.669  -0.595 -0.757 H1  DTX 47 
0L5 H2    H2  H 0 1 N N N 21.827 -9.664  -1.873  8.186  0.780  0.264  H2  DTX 48 
0L5 H3    H3  H 0 1 N N N 21.279 -8.027  -3.964  10.163 0.400  1.711  H3  DTX 49 
0L5 H4    H4  H 0 1 N N N 19.612 -8.263  -3.336  10.647 -0.975 0.689  H4  DTX 50 
0L5 H5    H5  H 0 1 N N N 21.991 -7.286  -1.697  10.835 0.543  -1.263 H5  DTX 51 
0L5 H6    H6  H 0 1 N N N 20.745 -6.231  -2.444  10.352 1.918  -0.241 H6  DTX 52 
0L5 H7    H7  H 0 1 N N N 19.422 -8.228  -0.858  12.330 1.538  1.206  H7  DTX 53 
0L5 H8    H8  H 0 1 N N N 20.733 -7.488  0.122   12.813 0.163  0.184  H8  DTX 54 
0L5 H9    H9  H 0 1 N N N 18.969 -6.051  0.554   13.002 1.680  -1.768 H9  DTX 55 
0L5 H10   H10 H 0 1 N N N 18.274 -6.233  -1.092  12.518 3.055  -0.747 H10 DTX 56 
0L5 H11   H11 H 0 1 N N N 20.359 -4.953  -1.921  14.496 2.675  0.700  H11 DTX 57 
0L5 H12   H12 H 0 1 N N N 20.629 -4.528  -0.196  14.979 1.301  -0.322 H12 DTX 58 
0L5 H13   H13 H 0 1 N N N 18.345 -3.567  -0.080  15.168 2.818  -2.274 H13 DTX 59 
0L5 H14   H14 H 0 1 N N N 18.087 -3.982  -1.808  14.684 4.193  -1.252 H14 DTX 60 
0L5 H15   H15 H 0 1 N N N 20.131 -2.537  -2.326  16.662 3.813  0.195  H15 DTX 61 
0L5 H16   H16 H 0 1 N N N 20.046 -1.968  -0.624  17.146 2.438  -0.827 H16 DTX 62 
0L5 H17   H17 H 0 1 N N N 17.737 -1.165  -1.000  17.334 3.955  -2.779 H17 DTX 63 
0L5 H18   H18 H 0 1 N N N 17.801 -1.754  -2.696  16.851 5.330  -1.757 H18 DTX 64 
0L5 H19   H19 H 0 1 N N N 18.346 0.501   -2.508  19.226 5.127  -1.911 H19 DTX 65 
0L5 H20   H20 H 0 1 N N N 19.980 -11.741 -3.811  6.211  -1.056 0.241  H20 DTX 66 
0L5 H21   H21 H 0 1 N N N 21.415 -13.558 -4.623  6.517  -3.332 1.886  H21 DTX 67 
0L5 H22   H22 H 0 1 N N N 22.486 -12.300 -5.330  6.027  -1.961 2.910  H22 DTX 68 
0L5 H23   H23 H 0 1 N N N 20.782 -11.725 -6.977  4.050  -1.585 1.460  H23 DTX 69 
0L5 H24   H24 H 0 1 N N N 19.633 -12.888 -6.234  4.541  -2.956 0.436  H24 DTX 70 
0L5 H25   H25 H 0 1 N N N 22.339 -13.850 -7.186  4.354  -4.478 2.384  H25 DTX 71 
0L5 H26   H26 H 0 1 N N N 21.023 -13.564 -8.376  3.864  -3.108 3.408  H26 DTX 72 
0L5 H27   H27 H 0 1 N N N 19.609 -17.993 -8.524  0.149  -2.700 -0.480 H27 DTX 73 
0L5 H28   H28 H 0 1 N N N 18.612 -19.217 -3.932  -2.827 -5.578 1.977  H28 DTX 74 
0L5 H29   H29 H 0 1 N N N 18.631 -21.465 -7.904  -1.551 -2.153 -1.860 H29 DTX 75 
0L5 H30   H30 H 0 1 N N N 18.504 -20.820 -11.161 -3.714 -1.084 -2.957 H30 DTX 76 
0L5 H31   H31 H 0 1 N N N 17.513 -18.294 -9.810  -4.838 -3.889 -3.062 H31 DTX 77 
0L5 H32   H32 H 0 1 N N N 15.502 -19.147 -10.631 -3.627 -3.766 -5.119 H32 DTX 78 
0L5 H33   H33 H 0 1 N N N 16.582 -19.574 -8.066  -1.924 -3.965 -3.303 H33 DTX 79 
0L5 H34   H34 H 0 1 N N N 16.628 -21.096 -9.019  -2.949 -4.821 -2.109 H34 DTX 80 
0L5 H35   H35 H 0 1 N N N 18.868 -18.710 -12.372 -6.182 -1.654 -3.166 H35 DTX 81 
0L5 H36   H36 H 0 1 N N N 20.427 -19.367 -11.768 -6.087 -2.413 -1.559 H36 DTX 82 
0L5 H37   H37 H 0 1 N N N 20.756 -14.679 -11.260 -7.692 1.132  -3.177 H37 DTX 83 
0L5 H38   H38 H 0 1 N N N 15.300 -17.673 -11.856 -7.121 1.848  2.429  H38 DTX 84 
0L5 H39   H39 H 0 1 N N N 16.841 -11.852 -13.362 -7.063 5.466  3.041  H39 DTX 85 
0L5 H40   H40 H 0 1 N N N 17.717 -14.807 -15.441 -7.613 7.516  0.703  H40 DTX 86 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0L5 O1G   PG    DOUB N N 1  
0L5 O2G   PG    SING N N 2  
0L5 PG    O3G   SING N N 3  
0L5 PG    O3B   SING N N 4  
0L5 O1B   PB    DOUB N N 5  
0L5 O2A   PA    DOUB N N 6  
0L5 O3B   PB    SING N N 7  
0L5 PB    O2B   SING N N 8  
0L5 PB    O3A   SING N N 9  
0L5 PA    O3A   SING N N 10 
0L5 PA    "O5'" SING N N 11 
0L5 PA    O1A   SING N N 12 
0L5 "C5'" "O5'" SING N N 13 
0L5 "C5'" "C4'" SING N N 14 
0L5 "O3'" "C3'" SING N N 15 
0L5 "C4'" "C3'" SING N N 16 
0L5 "C4'" "O4'" SING N N 17 
0L5 "C3'" "C2'" SING N N 18 
0L5 "O4'" "C1'" SING N N 19 
0L5 "C2'" "C1'" SING N N 20 
0L5 "C1'" N1    SING N N 21 
0L5 C6    N1    SING N N 22 
0L5 C6    C5    DOUB N N 23 
0L5 C31   C30   SING N N 24 
0L5 C31   C32   SING N N 25 
0L5 N1    C2    SING N N 26 
0L5 C30   C29   TRIP N N 27 
0L5 C29   C5    SING N N 28 
0L5 C5    C4    SING N N 29 
0L5 C32   C33   SING N N 30 
0L5 C2    O2    DOUB N N 31 
0L5 C2    N3    SING N N 32 
0L5 C33   N34   SING N N 33 
0L5 C4    N3    SING N N 34 
0L5 C4    O4    DOUB N N 35 
0L5 O36   C35   DOUB N N 36 
0L5 N34   C35   SING N N 37 
0L5 C35   C37   SING N N 38 
0L5 C38   C37   SING N N 39 
0L5 C38   C39   SING N N 40 
0L5 O46   C45   SING N N 41 
0L5 C39   C40   SING N N 42 
0L5 C45   C44   SING N N 43 
0L5 C44   C43   SING N N 44 
0L5 C43   C42   SING N N 45 
0L5 C42   C41   SING N N 46 
0L5 C40   C41   SING N N 47 
0L5 C37   H1    SING N N 48 
0L5 C37   H2    SING N N 49 
0L5 C38   H3    SING N N 50 
0L5 C38   H4    SING N N 51 
0L5 C39   H5    SING N N 52 
0L5 C39   H6    SING N N 53 
0L5 C40   H7    SING N N 54 
0L5 C40   H8    SING N N 55 
0L5 C41   H9    SING N N 56 
0L5 C41   H10   SING N N 57 
0L5 C42   H11   SING N N 58 
0L5 C42   H12   SING N N 59 
0L5 C43   H13   SING N N 60 
0L5 C43   H14   SING N N 61 
0L5 C44   H15   SING N N 62 
0L5 C44   H16   SING N N 63 
0L5 C45   H17   SING N N 64 
0L5 C45   H18   SING N N 65 
0L5 O46   H19   SING N N 66 
0L5 N34   H20   SING N N 67 
0L5 C33   H21   SING N N 68 
0L5 C33   H22   SING N N 69 
0L5 C32   H23   SING N N 70 
0L5 C32   H24   SING N N 71 
0L5 C31   H25   SING N N 72 
0L5 C31   H26   SING N N 73 
0L5 C6    H27   SING N N 74 
0L5 N3    H28   SING N N 75 
0L5 "C1'" H29   SING N N 76 
0L5 "C4'" H30   SING N N 77 
0L5 "C3'" H31   SING N N 78 
0L5 "O3'" H32   SING N N 79 
0L5 "C2'" H33   SING N N 80 
0L5 "C2'" H34   SING N N 81 
0L5 "C5'" H35   SING N N 82 
0L5 "C5'" H36   SING N N 83 
0L5 O1A   H37   SING N N 84 
0L5 O2B   H38   SING N N 85 
0L5 O3G   H39   SING N N 86 
0L5 O2G   H40   SING N N 87 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0L5 SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C(C#CCCCNC(=O)CCCCCCCCCO)=C1)CC2O" 
0L5 InChI            InChI                1.03  
;InChI=1S/C24H40N3O16P3/c28-14-10-5-3-1-2-4-8-12-21(30)25-13-9-6-7-11-18-16-27(24(32)26-23(18)31)22-15-19(29)20(41-22)17-40-45(36,37)43-46(38,39)42-44(33,34)35/h16,19-20,22,28-29H,1-6,8-10,12-15,17H2,(H,25,30)(H,36,37)(H,38,39)(H,26,31,32)(H2,33,34,35)/t19-,20+,22+/m0/s1
;
0L5 InChIKey         InChI                1.03  UGHLPDROZCTFGX-TUNNFDKTSA-N 
0L5 SMILES_CANONICAL CACTVS               3.370 "OCCCCCCCCCC(=O)NCCCC#CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O" 
0L5 SMILES           CACTVS               3.370 "OCCCCCCCCCC(=O)NCCCC#CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O" 
0L5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)C#CCCCNC(=O)CCCCCCCCCO)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" 
0L5 SMILES           "OpenEye OEToolkits" 1.7.6 "C1C(C(OC1N2C=C(C(=O)NC2=O)C#CCCCNC(=O)CCCCCCCCCO)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0L5 "SYSTEMATIC NAME" ACDLabs              12.01 
;2'-deoxy-5-{5-[(10-hydroxydecanoyl)amino]pent-1-yn-1-yl}uridine 5'-(tetrahydrogen triphosphate)
;
0L5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,5R)-3-oxidanyl-5-[5-[5-(10-oxidanyldecanoylamino)pent-1-ynyl]-2,4-bis(oxidanylidene)pyrimidin-1-yl]oxolan-2-yl]methyl [oxidanyl(phosphonooxy)phosphoryl] hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0L5 "Create component" 2012-02-08 RCSB 
# 
