data_YO4
# 
_chem_comp.id                                    YO4 
_chem_comp.name                                  "2-({(1R)-1-[2-(4,4-dimethylpiperidin-1-yl)-3,6-dimethyl-4-oxo-4H-1-benzopyran-8-yl]ethyl}amino)benzoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H32 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-07 
_chem_comp.pdbx_modified_date                    2024-03-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        448.554 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YO4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8V8H 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YO4 C10 C1  C 0 1 N N N N N N 64.359 -19.744 12.701 -4.000 -2.191 -1.323 C10 YO4 1  
YO4 C14 C2  C 0 1 N N N N N N 62.282 -20.850 13.564 -3.354 -2.631 1.052  C14 YO4 2  
YO4 C19 C3  C 0 1 Y N N N N N 65.539 -19.890 18.450 -0.932 2.887  0.094  C19 YO4 3  
YO4 C20 C4  C 0 1 Y N N N N N 66.223 -20.118 19.637 -0.033 3.950  0.040  C20 YO4 4  
YO4 C22 C5  C 0 1 N N N N N N 67.676 -21.543 21.085 2.269  4.851  -0.314 C22 YO4 5  
YO4 C23 C6  C 0 1 Y N N N N N 66.954 -22.222 18.793 1.727  2.412  -0.495 C23 YO4 6  
YO4 C1  C7  C 0 1 N N N N N N 67.458 -27.241 17.787 5.488  -0.209 0.365  C1  YO4 7  
YO4 C11 C8  C 0 1 N N N N N N 62.951 -20.224 12.345 -4.281 -3.053 -0.090 C11 YO4 8  
YO4 C12 C9  C 0 1 N N N N N N 63.045 -21.270 11.239 -4.035 -4.524 -0.429 C12 YO4 9  
YO4 C13 C10 C 0 1 N N N N N N 62.101 -19.054 11.847 -5.738 -2.866 0.341  C13 YO4 10 
YO4 C15 C11 C 0 1 N N N N N N 62.199 -19.791 14.660 -3.628 -1.167 1.413  C15 YO4 11 
YO4 C16 C12 C 0 1 N N N N N N 64.104 -18.453 17.045 -3.195 1.970  0.439  C16 YO4 12 
YO4 C17 C13 C 0 1 N N N N N N 63.315 -17.191 16.812 -4.662 2.117  0.751  C17 YO4 13 
YO4 C18 C14 C 0 1 N N N N N N 64.777 -18.638 18.260 -2.360 3.103  0.406  C18 YO4 14 
YO4 C2  C15 C 0 1 Y N N N N N 66.179 -26.631 18.155 4.671  -1.432 0.285  C2  YO4 15 
YO4 C21 C16 C 0 1 Y N N N N N 66.929 -21.284 19.806 1.291  3.706  -0.254 C21 YO4 16 
YO4 C24 C17 C 0 1 Y N N N N N 64.622 -24.818 18.273 2.567  -2.521 -0.186 C24 YO4 17 
YO4 C25 C18 C 0 1 Y N N N N N 63.715 -25.637 18.906 3.132  -3.737 0.137  C25 YO4 18 
YO4 C26 C19 C 0 1 Y N N N N N 64.030 -26.956 19.169 4.457  -3.812 0.539  C26 YO4 19 
YO4 C27 C20 C 0 1 Y N N N N N 65.252 -27.451 18.796 5.226  -2.672 0.614  C27 YO4 20 
YO4 C3  C21 C 0 1 Y N N N N N 65.870 -25.284 17.878 3.327  -1.360 -0.116 C3  YO4 21 
YO4 C4  C22 C 0 1 N N R N N N 66.407 -23.157 16.579 1.329  -0.045 -0.738 C4  YO4 22 
YO4 C5  C23 C 0 1 N N N N N N 67.391 -22.694 15.500 1.094  -0.378 -2.213 C5  YO4 23 
YO4 C6  C24 C 0 1 Y N N N N N 66.289 -22.031 17.603 0.844  1.354  -0.456 C6  YO4 24 
YO4 C7  C25 C 0 1 Y N N N N N 65.564 -20.842 17.419 -0.493 1.578  -0.155 C7  YO4 25 
YO4 C8  C26 C 0 1 N N N N N N 64.184 -19.432 16.108 -2.670 0.741  0.175  C8  YO4 26 
YO4 C9  C27 C 0 1 N N N N N N 64.245 -18.671 13.779 -4.281 -0.723 -0.989 C9  YO4 27 
YO4 N1  N1  N 0 1 N N N N N N 66.779 -24.432 17.235 2.761  -0.134 -0.440 N1  YO4 28 
YO4 N2  N2  N 0 1 N N N N N N 63.558 -19.300 14.903 -3.501 -0.350 0.199  N2  YO4 29 
YO4 O1  O1  O 0 1 N N N N N N 67.934 -28.108 18.492 5.036  0.850  -0.023 O1  YO4 30 
YO4 O2  O2  O 0 1 N N N N N N 68.091 -26.857 16.668 6.737  -0.265 0.868  O2  YO4 31 
YO4 O3  O3  O 0 1 N N N N N N 64.880 -20.555 16.297 -1.374 0.556  -0.112 O3  YO4 32 
YO4 O4  O4  O 0 1 N N N N N N 64.732 -17.787 19.131 -2.799 4.221  0.627  O4  YO4 33 
YO4 H1  H1  H 0 1 N N N N N N 64.845 -19.323 11.808 -2.956 -2.304 -1.615 H1  YO4 34 
YO4 H2  H2  H 0 1 N N N N N N 64.955 -20.588 13.079 -4.644 -2.508 -2.143 H2  YO4 35 
YO4 H3  H3  H 0 1 N N N N N N 61.270 -21.192 13.299 -3.539 -3.260 1.923  H3  YO4 36 
YO4 H4  H4  H 0 1 N N N N N N 62.877 -21.705 13.917 -2.316 -2.740 0.738  H4  YO4 37 
YO4 H5  H5  H 0 1 N N N N N N 66.200 -19.380 20.425 -0.372 4.958  0.228  H5  YO4 38 
YO4 H6  H6  H 0 1 N N N N N N 67.016 -22.059 21.798 2.706  5.009  0.672  H6  YO4 39 
YO4 H7  H7  H 0 1 N N N N N N 68.554 -22.172 20.876 3.059  4.617  -1.028 H7  YO4 40 
YO4 H8  H8  H 0 1 N N N N N N 68.005 -20.587 21.517 1.750  5.756  -0.630 H8  YO4 41 
YO4 H9  H9  H 0 1 N N N N N N 67.513 -23.134 18.939 2.767  2.233  -0.724 H9  YO4 42 
YO4 H10 H10 H 0 1 N N N N N N 62.035 -21.620 10.978 -2.997 -4.657 -0.736 H10 YO4 43 
YO4 H11 H11 H 0 1 N N N N N N 63.519 -20.824 10.352 -4.235 -5.138 0.449  H11 YO4 44 
YO4 H12 H12 H 0 1 N N N N N N 63.648 -22.120 11.589 -4.696 -4.825 -1.242 H12 YO4 45 
YO4 H13 H13 H 0 1 N N N N N N 61.093 -19.414 11.595 -6.398 -3.168 -0.472 H13 YO4 46 
YO4 H14 H14 H 0 1 N N N N N N 62.031 -18.290 12.635 -5.938 -3.480 1.219  H14 YO4 47 
YO4 H15 H15 H 0 1 N N N N N N 62.568 -18.616 10.952 -5.914 -1.818 0.582  H15 YO4 48 
YO4 H16 H16 H 0 1 N N N N N N 61.790 -20.234 15.580 -4.638 -1.072 1.813  H16 YO4 49 
YO4 H17 H17 H 0 1 N N N N N N 61.553 -18.963 14.333 -2.907 -0.833 2.158  H17 YO4 50 
YO4 H18 H18 H 0 1 N N N N N N 63.389 -16.543 17.698 -4.911 3.175  0.835  H18 YO4 51 
YO4 H19 H19 H 0 1 N N N N N N 63.720 -16.662 15.936 -5.250 1.668  -0.049 H19 YO4 52 
YO4 H20 H20 H 0 1 N N N N N N 62.260 -17.446 16.631 -4.886 1.615  1.692  H20 YO4 53 
YO4 H21 H21 H 0 1 N N N N N N 64.358 -23.789 18.079 1.534  -2.471 -0.498 H21 YO4 54 
YO4 H22 H22 H 0 1 N N N N N N 62.752 -25.246 19.199 2.538  -4.637 0.077  H22 YO4 55 
YO4 H23 H23 H 0 1 N N N N N N 63.316 -27.595 19.667 4.889  -4.769 0.789  H23 YO4 56 
YO4 H24 H24 H 0 1 N N N N N N 65.498 -28.483 19.000 6.258  -2.737 0.928  H24 YO4 57 
YO4 H25 H25 H 0 1 N N N N N N 65.423 -23.285 16.104 0.783  -0.752 -0.114 H25 YO4 58 
YO4 H26 H26 H 0 1 N N N N N N 67.041 -21.745 15.067 1.445  -1.389 -2.418 H26 YO4 59 
YO4 H27 H27 H 0 1 N N N N N N 68.385 -22.548 15.949 0.029  -0.311 -2.435 H27 YO4 60 
YO4 H28 H28 H 0 1 N N N N N N 67.454 -23.457 14.710 1.640  0.329  -2.837 H28 YO4 61 
YO4 H29 H29 H 0 1 N N N N N N 63.663 -17.815 13.406 -3.989 -0.094 -1.831 H29 YO4 62 
YO4 H30 H30 H 0 1 N N N N N N 65.245 -18.329 14.085 -5.344 -0.591 -0.787 H30 YO4 63 
YO4 H31 H31 H 0 1 N N N N N N 67.459 -24.191 17.928 3.313  0.663  -0.469 H31 YO4 64 
YO4 H32 H32 H 0 1 N N N N N N 68.893 -27.357 16.570 7.235  0.563  0.900  H32 YO4 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YO4 O1  C1  DOUB N N 1  
YO4 C1  O2  SING N N 2  
YO4 C1  C2  SING N N 3  
YO4 C2  C3  DOUB Y N 4  
YO4 C2  C27 SING Y N 5  
YO4 C3  N1  SING N N 6  
YO4 C3  C24 SING Y N 7  
YO4 N1  C4  SING N N 8  
YO4 C4  C5  SING N N 9  
YO4 C4  C6  SING N N 10 
YO4 C6  C7  DOUB Y N 11 
YO4 C6  C23 SING Y N 12 
YO4 C7  O3  SING N N 13 
YO4 C7  C19 SING Y N 14 
YO4 O3  C8  SING N N 15 
YO4 C8  N2  SING N N 16 
YO4 C8  C16 DOUB N N 17 
YO4 N2  C9  SING N N 18 
YO4 N2  C15 SING N N 19 
YO4 C9  C10 SING N N 20 
YO4 C10 C11 SING N N 21 
YO4 C11 C12 SING N N 22 
YO4 C11 C13 SING N N 23 
YO4 C11 C14 SING N N 24 
YO4 C14 C15 SING N N 25 
YO4 C16 C17 SING N N 26 
YO4 C16 C18 SING N N 27 
YO4 C18 O4  DOUB N N 28 
YO4 C18 C19 SING N N 29 
YO4 C19 C20 DOUB Y N 30 
YO4 C20 C21 SING Y N 31 
YO4 C21 C22 SING N N 32 
YO4 C21 C23 DOUB Y N 33 
YO4 C24 C25 DOUB Y N 34 
YO4 C25 C26 SING Y N 35 
YO4 C26 C27 DOUB Y N 36 
YO4 C10 H1  SING N N 37 
YO4 C10 H2  SING N N 38 
YO4 C14 H3  SING N N 39 
YO4 C14 H4  SING N N 40 
YO4 C20 H5  SING N N 41 
YO4 C22 H6  SING N N 42 
YO4 C22 H7  SING N N 43 
YO4 C22 H8  SING N N 44 
YO4 C23 H9  SING N N 45 
YO4 C12 H10 SING N N 46 
YO4 C12 H11 SING N N 47 
YO4 C12 H12 SING N N 48 
YO4 C13 H13 SING N N 49 
YO4 C13 H14 SING N N 50 
YO4 C13 H15 SING N N 51 
YO4 C15 H16 SING N N 52 
YO4 C15 H17 SING N N 53 
YO4 C17 H18 SING N N 54 
YO4 C17 H19 SING N N 55 
YO4 C17 H20 SING N N 56 
YO4 C24 H21 SING N N 57 
YO4 C25 H22 SING N N 58 
YO4 C26 H23 SING N N 59 
YO4 C27 H24 SING N N 60 
YO4 C4  H25 SING N N 61 
YO4 C5  H26 SING N N 62 
YO4 C5  H27 SING N N 63 
YO4 C5  H28 SING N N 64 
YO4 C9  H29 SING N N 65 
YO4 C9  H30 SING N N 66 
YO4 N1  H31 SING N N 67 
YO4 O2  H32 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YO4 SMILES           ACDLabs              12.01 "O=C(O)c1ccccc1NC(C)c1cc(C)cc2c1OC(=C(C)C2=O)N1CCC(C)(C)CC1"                                                                                                                      
YO4 InChI            InChI                1.06  "InChI=1S/C27H32N2O4/c1-16-14-20(18(3)28-22-9-7-6-8-19(22)26(31)32)24-21(15-16)23(30)17(2)25(33-24)29-12-10-27(4,5)11-13-29/h6-9,14-15,18,28H,10-13H2,1-5H3,(H,31,32)/t18-/m1/s1" 
YO4 InChIKey         InChI                1.06  WTFFQZJMEWAKGP-GOSISDBHSA-N                                                                                                                                                       
YO4 SMILES_CANONICAL CACTVS               3.385 "C[C@@H](Nc1ccccc1C(O)=O)c2cc(C)cc3C(=O)C(=C(Oc23)N4CCC(C)(C)CC4)C"                                                                                                               
YO4 SMILES           CACTVS               3.385 "C[CH](Nc1ccccc1C(O)=O)c2cc(C)cc3C(=O)C(=C(Oc23)N4CCC(C)(C)CC4)C"                                                                                                                 
YO4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc2c(c(c1)[C@@H](C)Nc3ccccc3C(=O)O)OC(=C(C2=O)C)N4CCC(CC4)(C)C"                                                                                                               
YO4 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc2c(c(c1)C(C)Nc3ccccc3C(=O)O)OC(=C(C2=O)C)N4CCC(CC4)(C)C"                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YO4 "SYSTEMATIC NAME" ACDLabs              12.01 "2-({(1R)-1-[2-(4,4-dimethylpiperidin-1-yl)-3,6-dimethyl-4-oxo-4H-1-benzopyran-8-yl]ethyl}amino)benzoic acid"      
YO4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[[(1~{R})-1-[2-(4,4-dimethylpiperidin-1-yl)-3,6-dimethyl-4-oxidanylidene-chromen-8-yl]ethyl]amino]benzoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YO4 "Create component" 2023-12-07 RCSB 
YO4 "Initial release"  2024-03-20 RCSB 
# 
