data_Y24
#

_chem_comp.id                                   Y24
_chem_comp.name                                 "1,1',1'',1''',1''''-[(3R,5S,7S,9R)-decane-1,3,5,7,9-pentayl]penta(pyrrolidin-2-one)"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C30 H47 N5 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-01-27
_chem_comp.pdbx_modified_date                   2021-02-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       557.725
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y24
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6V9E
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y24  C11  C1   C  0  1  N  N  N  31.665  48.617  -11.386   6.082  -0.417  -2.155  C11  Y24   1  
Y24  C01  C2   C  0  1  N  N  R  31.079  48.200  -10.033   4.988  -0.372  -1.087  C01  Y24   2  
Y24  C02  C3   C  0  1  N  N  N  30.551  46.752  -10.063   3.622  -0.226  -1.762  C02  Y24   3  
Y24  C03  C4   C  0  1  N  N  S  30.190  46.275  -11.477   2.519  -0.306  -0.704  C03  Y24   4  
Y24  C04  C5   C  0  1  N  N  N  30.221  44.734  -11.545   1.163  -0.036  -1.360  C04  Y24   5  
Y24  C05  C6   C  0  1  N  N  S  31.340  44.068  -12.399   0.077   0.007  -0.284  C05  Y24   6  
Y24  C06  C7   C  0  1  N  N  N  32.399  43.348  -11.534  -1.294   0.153  -0.949  C06  Y24   7  
Y24  C07  C8   C  0  1  N  N  R  32.555  41.847  -11.875  -2.389   0.071   0.116  C07  Y24   8  
Y24  C08  C9   C  0  1  N  N  N  32.196  41.600  -13.352  -3.750   0.341  -0.529  C08  Y24   9  
Y24  C09  C10  C  0  1  N  N  N  33.092  40.566  -14.035  -4.829   0.382   0.555  C09  Y24  10  
Y24  C22  C11  C  0  1  N  N  N  29.329  50.059  -10.541   5.441   0.661   1.248  C22  Y24  11  
Y24  C23  C12  C  0  1  N  N  N  29.554  49.351   -8.286   5.253   2.051  -0.604  C23  Y24  12  
Y24  C24  C13  C  0  1  N  N  N  28.482  50.433   -8.314   5.503   2.963   0.577  C24  Y24  13  
Y24  C25  C14  C  0  1  N  N  N  28.674  51.113   -9.653   5.199   2.080   1.809  C25  Y24  14  
Y24  C26  C15  C  0  1  N  N  N  27.599  46.501  -11.046   2.727  -1.915   1.321  C26  Y24  15  
Y24  C27  C16  C  0  1  N  N  N  26.482  46.924  -12.012   3.068  -3.419   1.410  C27  Y24  16  
Y24  C28  C17  C  0  1  N  N  N  27.057  48.049  -12.797   2.384  -3.973   0.138  C28  Y24  17  
Y24  C29  C18  C  0  1  N  N  N  28.530  47.755  -12.844   2.313  -2.783  -0.793  C29  Y24  18  
Y24  C30  C19  C  0  1  N  N  N  33.141  45.877  -13.086   0.352   2.429   0.198  C30  Y24  19  
Y24  C31  C20  C  0  1  N  N  N  33.485  46.585  -14.385   0.626   3.340   1.375  C31  Y24  20  
Y24  C32  C21  C  0  1  N  N  N  32.254  46.417  -15.233   1.163   2.391   2.471  C32  Y24  21  
Y24  C33  C22  C  0  1  N  N  N  31.665  45.084  -14.770   0.546   1.039   2.049  C33  Y24  22  
Y24  C34  C23  C  0  1  N  N  N  34.046  40.134  -10.616  -2.166  -1.539   2.139  C34  Y24  23  
Y24  C35  C24  C  0  1  N  N  N  35.472  39.627  -10.856  -1.823  -3.043   2.225  C35  Y24  24  
Y24  C36  C25  C  0  1  N  N  N  36.237  40.898  -11.204  -2.515  -3.596   0.958  C36  Y24  25  
Y24  C37  C26  C  0  1  N  N  N  35.185  41.792  -11.845  -2.594  -2.406   0.028  C37  Y24  26  
Y24  C38  C27  C  0  1  N  N  N  32.654  38.343  -15.256  -7.043  -0.405  -0.542  C38  Y24  27  
Y24  C39  C28  C  0  1  N  N  N  31.758  38.499  -13.055  -6.646   1.866  -0.265  C39  Y24  28  
Y24  C40  C29  C  0  1  N  N  N  31.415  37.120  -13.625  -7.999   1.759  -0.932  C40  Y24  29  
Y24  C41  C30  C  0  1  N  N  N  32.445  36.931  -14.725  -8.040   0.313  -1.478  C41  Y24  30  
Y24  N03  N1   N  0  1  N  N  N  30.044  49.147   -9.645   5.218   0.769  -0.199  N03  Y24  31  
Y24  N04  N2   N  0  1  N  N  N  28.863  46.804  -11.776   2.514  -1.643  -0.105  N04  Y24  32  
Y24  N05  N3   N  0  1  N  N  N  32.007  44.969  -13.344   0.313   1.148   0.604  N05  Y24  33  
Y24  N06  N4   N  0  1  N  N  N  33.865  41.298  -11.484  -2.389  -1.266   0.715  N06  Y24  34  
Y24  N07  N5   N  0  1  N  N  N  32.522  39.221  -14.092  -6.132   0.640  -0.063  N07  Y24  35  
Y24  O02  O1   O  0  1  N  N  N  29.926  48.773   -7.324   5.106   2.421  -1.749  O02  Y24  36  
Y24  O03  O2   O  0  1  N  N  N  29.303  48.221  -13.617   2.106  -2.846  -1.986  O03  Y24  37  
Y24  O04  O3   O  0  1  N  N  N  33.694  46.056  -12.050   0.186   2.802  -0.945  O04  Y24  38  
Y24  O06  O4   O  0  1  N  N  N  35.413  42.723  -12.545  -2.809  -2.469  -1.164  O06  Y24  39  
Y24  O07  O5   O  0  1  N  N  N  31.445  38.872  -11.971  -6.103   2.906   0.043  O07  Y24  40  
Y24  H1   H1   H  0  1  N  N  N  32.030  49.653  -11.325   7.055  -0.521  -1.675  H1   Y24  41  
Y24  H2   H2   H  0  1  N  N  N  32.500  47.949  -11.645   5.910  -1.266  -2.816  H2   Y24  42  
Y24  H3   H3   H  0  1  N  N  N  30.886  48.548  -12.160   6.061   0.505  -2.736  H3   Y24  43  
Y24  H4   H4   H  0  1  N  N  N  31.890  48.242   -9.291   5.009  -1.295  -0.507  H4   Y24  44  
Y24  H5   H5   H  0  1  N  N  N  29.651  46.694   -9.433   3.569   0.737  -2.269  H5   Y24  45  
Y24  H6   H6   H  0  1  N  N  N  31.327  46.087   -9.656   3.488  -1.027  -2.489  H6   Y24  46  
Y24  H7   H7   H  0  1  N  N  N  30.925  46.678  -12.189   2.704   0.438   0.070  H7   Y24  47  
Y24  H8   H8   H  0  1  N  N  N  29.255  44.404  -11.955   1.196   0.921  -1.881  H8   Y24  48  
Y24  H9   H9   H  0  1  N  N  N  30.329  44.362  -10.515   0.939  -0.830  -2.072  H9   Y24  49  
Y24  H10  H10  H  0  1  N  N  N  30.845  43.285  -12.993   0.103  -0.915   0.296  H10  Y24  50  
Y24  H11  H11  H  0  1  N  N  N  33.369  43.843  -11.687  -1.351   1.117  -1.455  H11  Y24  51  
Y24  H12  H12  H  0  1  N  N  N  32.105  43.437  -10.478  -1.432  -0.648  -1.675  H12  Y24  52  
Y24  H13  H13  H  0  1  N  N  N  31.795  41.318  -11.281  -2.200   0.815   0.890  H13  Y24  53  
Y24  H14  H14  H  0  1  N  N  N  32.286  42.552  -13.896  -3.721   1.298  -1.050  H14  Y24  54  
Y24  H15  H15  H  0  1  N  N  N  31.156  41.246  -13.403  -3.978  -0.453  -1.240  H15  Y24  55  
Y24  H16  H16  H  0  1  N  N  N  34.042  40.515  -13.483  -4.857  -0.575   1.076  H16  Y24  56  
Y24  H17  H17  H  0  1  N  N  N  33.284  40.903  -15.064  -4.600   1.176   1.265  H17  Y24  57  
Y24  H18  H18  H  0  1  N  N  N  28.563  49.511  -11.109   6.465   0.345   1.449  H18  Y24  58  
Y24  H19  H19  H  0  1  N  N  N  30.033  50.535  -11.240   4.735  -0.044   1.687  H19  Y24  59  
Y24  H20  H20  H  0  1  N  N  N  28.627  51.147   -7.490   6.542   3.293   0.591  H20  Y24  60  
Y24  H21  H21  H  0  1  N  N  N  27.478  49.989   -8.242   4.832   3.821   0.545  H21  Y24  61  
Y24  H22  H22  H  0  1  N  N  N  29.327  51.992   -9.550   4.165   2.201   2.130  H22  Y24  62  
Y24  H23  H23  H  0  1  N  N  N  27.705  51.423  -10.072   5.888   2.299   2.625  H23  Y24  63  
Y24  H24  H24  H  0  1  N  N  N  27.543  47.078  -10.111   1.819  -1.700   1.885  H24  Y24  64  
Y24  H25  H25  H  0  1  N  N  N  27.530  45.427  -10.819   3.556  -1.317   1.700  H25  Y24  65  
Y24  H26  H26  H  0  1  N  N  N  25.594  47.256  -11.454   4.146  -3.577   1.374  H26  Y24  66  
Y24  H27  H27  H  0  1  N  N  N  26.208  46.090  -12.675   2.640  -3.864   2.309  H27  Y24  67  
Y24  H28  H28  H  0  1  N  N  N  26.867  49.010  -12.297   2.986  -4.767  -0.303  H28  Y24  68  
Y24  H29  H29  H  0  1  N  N  N  26.632  48.073  -13.811   1.384  -4.338   0.371  H29  Y24  69  
Y24  H30  H30  H  0  1  N  N  N  34.357  46.117  -14.866   1.377   4.085   1.113  H30  Y24  70  
Y24  H31  H31  H  0  1  N  N  N  33.693  47.650  -14.206  -0.294   3.824   1.704  H31  Y24  71  
Y24  H32  H32  H  0  1  N  N  N  32.517  46.379  -16.300   2.252   2.348   2.445  H32  Y24  72  
Y24  H33  H33  H  0  1  N  N  N  31.544  47.239  -15.059   0.810   2.690   3.458  H33  Y24  73  
Y24  H34  H34  H  0  1  N  N  N  30.573  45.081  -14.904   1.239   0.226   2.261  H34  Y24  74  
Y24  H35  H35  H  0  1  N  N  N  32.107  44.252  -15.338  -0.398   0.877   2.568  H35  Y24  75  
Y24  H36  H36  H  0  1  N  N  N  33.918  40.423   -9.562  -3.070  -1.326   2.710  H36  Y24  76  
Y24  H37  H37  H  0  1  N  N  N  33.317  39.352  -10.873  -1.335  -0.941   2.513  H37  Y24  77  
Y24  H38  H38  H  0  1  N  N  N  35.501  38.908  -11.688  -0.745  -3.200   2.181  H38  Y24  78  
Y24  H39  H39  H  0  1  N  N  N  35.881  39.155   -9.950  -2.243  -3.489   3.126  H39  Y24  79  
Y24  H40  H40  H  0  1  N  N  N  37.052  40.683  -11.911  -1.916  -4.390   0.512  H40  Y24  80  
Y24  H41  H41  H  0  1  N  N  N  36.650  41.367  -10.299  -3.513  -3.963   1.197  H41  Y24  81  
Y24  H42  H42  H  0  1  N  N  N  33.655  38.442  -15.701  -7.573  -0.857   0.297  H42  Y24  82  
Y24  H43  H43  H  0  1  N  N  N  31.891  38.587  -16.010  -6.489  -1.166  -1.093  H43  Y24  83  
Y24  H44  H44  H  0  1  N  N  N  30.394  37.106  -14.034  -8.797   1.914  -0.205  H44  Y24  84  
Y24  H45  H45  H  0  1  N  N  N  31.513  36.340  -12.855  -8.082   2.479  -1.746  H45  Y24  85  
Y24  H46  H46  H  0  1  N  N  N  32.062  36.266  -15.513  -7.698   0.278  -2.513  H46  Y24  86  
Y24  H47  H47  H  0  1  N  N  N  33.382  36.519  -14.321  -9.039  -0.112  -1.385  H47  Y24  87  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y24  C38  C41  SING  N  N   1  
Y24  C38  N07  SING  N  N   2  
Y24  C32  C33  SING  N  N   3  
Y24  C32  C31  SING  N  N   4  
Y24  C33  N05  SING  N  N   5  
Y24  C41  C40  SING  N  N   6  
Y24  C31  C30  SING  N  N   7  
Y24  N07  C09  SING  N  N   8  
Y24  N07  C39  SING  N  N   9  
Y24  C09  C08  SING  N  N  10  
Y24  C40  C39  SING  N  N  11  
Y24  O03  C29  DOUB  N  N  12  
Y24  C08  C07  SING  N  N  13  
Y24  N05  C30  SING  N  N  14  
Y24  N05  C05  SING  N  N  15  
Y24  C30  O04  DOUB  N  N  16  
Y24  C39  O07  DOUB  N  N  17  
Y24  C29  C28  SING  N  N  18  
Y24  C29  N04  SING  N  N  19  
Y24  C28  C27  SING  N  N  20  
Y24  O06  C37  DOUB  N  N  21  
Y24  C05  C04  SING  N  N  22  
Y24  C05  C06  SING  N  N  23  
Y24  C27  C26  SING  N  N  24  
Y24  C07  C06  SING  N  N  25  
Y24  C07  N06  SING  N  N  26  
Y24  C37  N06  SING  N  N  27  
Y24  C37  C36  SING  N  N  28  
Y24  N04  C03  SING  N  N  29  
Y24  N04  C26  SING  N  N  30  
Y24  C04  C03  SING  N  N  31  
Y24  N06  C34  SING  N  N  32  
Y24  C03  C02  SING  N  N  33  
Y24  C11  C01  SING  N  N  34  
Y24  C36  C35  SING  N  N  35  
Y24  C35  C34  SING  N  N  36  
Y24  C22  C25  SING  N  N  37  
Y24  C22  N03  SING  N  N  38  
Y24  C02  C01  SING  N  N  39  
Y24  C01  N03  SING  N  N  40  
Y24  C25  C24  SING  N  N  41  
Y24  N03  C23  SING  N  N  42  
Y24  C24  C23  SING  N  N  43  
Y24  C23  O02  DOUB  N  N  44  
Y24  C11  H1   SING  N  N  45  
Y24  C11  H2   SING  N  N  46  
Y24  C11  H3   SING  N  N  47  
Y24  C01  H4   SING  N  N  48  
Y24  C02  H5   SING  N  N  49  
Y24  C02  H6   SING  N  N  50  
Y24  C03  H7   SING  N  N  51  
Y24  C04  H8   SING  N  N  52  
Y24  C04  H9   SING  N  N  53  
Y24  C05  H10  SING  N  N  54  
Y24  C06  H11  SING  N  N  55  
Y24  C06  H12  SING  N  N  56  
Y24  C07  H13  SING  N  N  57  
Y24  C08  H14  SING  N  N  58  
Y24  C08  H15  SING  N  N  59  
Y24  C09  H16  SING  N  N  60  
Y24  C09  H17  SING  N  N  61  
Y24  C22  H18  SING  N  N  62  
Y24  C22  H19  SING  N  N  63  
Y24  C24  H20  SING  N  N  64  
Y24  C24  H21  SING  N  N  65  
Y24  C25  H22  SING  N  N  66  
Y24  C25  H23  SING  N  N  67  
Y24  C26  H24  SING  N  N  68  
Y24  C26  H25  SING  N  N  69  
Y24  C27  H26  SING  N  N  70  
Y24  C27  H27  SING  N  N  71  
Y24  C28  H28  SING  N  N  72  
Y24  C28  H29  SING  N  N  73  
Y24  C31  H30  SING  N  N  74  
Y24  C31  H31  SING  N  N  75  
Y24  C32  H32  SING  N  N  76  
Y24  C32  H33  SING  N  N  77  
Y24  C33  H34  SING  N  N  78  
Y24  C33  H35  SING  N  N  79  
Y24  C34  H36  SING  N  N  80  
Y24  C34  H37  SING  N  N  81  
Y24  C35  H38  SING  N  N  82  
Y24  C35  H39  SING  N  N  83  
Y24  C36  H40  SING  N  N  84  
Y24  C36  H41  SING  N  N  85  
Y24  C38  H42  SING  N  N  86  
Y24  C38  H43  SING  N  N  87  
Y24  C40  H44  SING  N  N  88  
Y24  C40  H45  SING  N  N  89  
Y24  C41  H46  SING  N  N  90  
Y24  C41  H47  SING  N  N  91  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y24  SMILES            ACDLabs               12.01  "CC(N1CCCC1=O)CC(CC(CC(N2CCCC2=O)CCN3CCCC3=O)N4C(=O)CCC4)N5CCCC5=O"  
Y24  InChI             InChI                 1.03   "InChI=1S/C30H47N5O5/c1-22(32-14-3-8-27(32)37)19-24(34-16-5-10-29(34)39)21-25(35-17-6-11-30(35)40)20-23(33-15-4-9-28(33)38)12-18-31-13-2-7-26(31)36/h22-25H,2-21H2,1H3/t22-,23-,24+,25+/m1/s1"  
Y24  InChIKey          InChI                 1.03   NCEAZVHIMHJKAN-NGSHPTGOSA-N  
Y24  SMILES_CANONICAL  CACTVS                3.385  "C[C@H](C[C@@H](C[C@H](C[C@@H](CCN1CCCC1=O)N2CCCC2=O)N3CCCC3=O)N4CCCC4=O)N5CCCC5=O"  
Y24  SMILES            CACTVS                3.385  "C[CH](C[CH](C[CH](C[CH](CCN1CCCC1=O)N2CCCC2=O)N3CCCC3=O)N4CCCC4=O)N5CCCC5=O"  
Y24  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H](C[C@@H](C[C@H](C[C@@H](CCN1CCCC1=O)N2CCCC2=O)N3CCCC3=O)N4CCCC4=O)N5CCCC5=O"  
Y24  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(CC(CC(CC(CCN1CCCC1=O)N2CCCC2=O)N3CCCC3=O)N4CCCC4=O)N5CCCC5=O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y24  "SYSTEMATIC NAME"  ACDLabs               12.01  "1,1',1'',1''',1''''-[(3R,5S,7S,9R)-decane-1,3,5,7,9-pentayl]penta(pyrrolidin-2-one)"  
Y24  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "1-[(3~{R},5~{S},7~{S},9~{R})-3,5,7,9-tetrakis(2-oxidanylidenepyrrolidin-1-yl)decyl]pyrrolidin-2-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y24  "Create component"  2021-01-27  RCSB  
Y24  "Initial release"   2021-02-10  RCSB  
##
