data_XV4
# 
_chem_comp.id                                    XV4 
_chem_comp.name                                  "N-[(2S)-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H32 N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-01-14 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        444.524 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XV4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7LDL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XV4 C10  C1  C 0 1 N N N N N N 16.679 11.853 -6.697  -5.845 -2.027 1.132  C10  XV4 1  
XV4 C15  C2  C 0 1 N N N N N N 10.135 15.712 -6.508  -0.702 2.660  0.363  C15  XV4 2  
XV4 C17  C3  C 0 1 N N N N N N 7.703  16.307 -6.370  -2.092 2.424  2.425  C17  XV4 3  
XV4 C20  C4  C 0 1 N N N N N N 11.323 12.743 -4.439  1.797  0.647  0.617  C20  XV4 4  
XV4 C21  C5  C 0 1 Y N N N N N 11.050 12.383 -2.944  3.128  0.232  0.154  C21  XV4 5  
XV4 C22  C6  C 0 1 Y N N N N N 10.196 13.156 -2.082  4.204  -0.000 0.953  C22  XV4 6  
XV4 C24  C7  C 0 1 Y N N N N N 9.744  12.558 0.542   6.621  -0.731 0.378  C24  XV4 7  
XV4 C26  C8  C 0 1 N N N N N N 9.006  14.363 1.926   8.458  -1.119 1.834  C26  XV4 8  
XV4 C28  C9  C 0 1 Y N N N N N 10.894 10.583 1.452   6.978  -1.038 -1.977 C28  XV4 9  
XV4 C02  C10 C 0 1 N N N N N N 12.533 14.924 -6.377  -1.553 0.651  -0.815 C02  XV4 10 
XV4 C04  C11 C 0 1 N N S N N N 14.591 14.922 -7.887  -3.818 -0.003 -1.430 C04  XV4 11 
XV4 C05  C12 C 0 1 N N N N N N 15.391 13.608 -7.984  -5.056 -0.482 -0.669 C05  XV4 12 
XV4 C06  C13 C 0 1 N N S N N N 15.712 12.991 -6.571  -4.665 -1.620 0.277  C06  XV4 13 
XV4 C07  C14 C 0 1 N N N N N N 16.412 14.008 -5.735  -4.320 -2.896 -0.525 C07  XV4 14 
XV4 C08  C15 C 0 1 N N N N N N 17.406 13.306 -4.835  -4.880 -4.005 0.392  C08  XV4 15 
XV4 C12  C16 C 0 1 N N N N N N 14.774 15.792 -9.121  -4.228 1.057  -2.454 C12  XV4 16 
XV4 C14  C17 C 0 1 N N S N N N 11.071 14.556 -6.205  -0.550 1.147  0.194  C14  XV4 17 
XV4 C16  C18 C 0 1 N N N N N N 8.701  15.126 -6.589  -2.060 2.969  0.996  C16  XV4 18 
XV4 C18  C19 C 0 1 N N N N N N 8.313  14.543 -7.926  -2.279 4.483  1.023  C18  XV4 19 
XV4 C23  C20 C 0 1 Y N N N N N 10.301 12.359 -0.668  5.284  -0.377 0.122  C23  XV4 20 
XV4 C27  C21 C 0 1 Y N N N N N 10.070 11.594 1.657   7.453  -1.058 -0.673 C27  XV4 21 
XV4 C29  C22 C 0 1 Y N N N N N 11.527 10.348 0.072   5.672  -0.694 -2.245 C29  XV4 22 
XV4 C30  C23 C 0 1 Y N N N N N 11.241 11.197 -0.917  4.811  -0.361 -1.204 C30  XV4 23 
XV4 N03  N1  N 0 1 N N N N N N 13.158 14.583 -7.673  -2.858 0.574  -0.486 N03  XV4 24 
XV4 N09  N2  N 0 1 N N N N N N 17.743 12.035 -5.663  -5.945 -3.366 1.174  N09  XV4 25 
XV4 N19  N3  N 0 1 N N N N N N 10.866 14.110 -4.847  0.805  0.842  -0.274 N19  XV4 26 
XV4 N31  N4  N 0 1 Y N N N N N 11.608 11.336 -2.190  3.487  0.010  -1.163 N31  XV4 27 
XV4 O01  O1  O 0 1 N N N N N N 13.150 15.492 -5.524  -1.187 0.322  -1.924 O01  XV4 28 
XV4 O11  O2  O 0 1 N N N N N N 16.650 10.979 -7.467  -6.590 -1.256 1.700  O11  XV4 29 
XV4 O13  O3  O 0 1 N N N N N N 15.884 16.041 -9.529  -4.933 2.110  -1.793 O13  XV4 30 
XV4 O25  O4  O 0 1 N N N N N N 8.854  13.656 0.710   7.089  -0.750 1.652  O25  XV4 31 
XV4 O32  O5  O 0 1 N N N N N N 12.072 12.098 -5.101  1.590  0.814  1.804  O32  XV4 32 
XV4 H152 H1  H 0 0 N N N N N N 10.408 16.177 -7.467  0.093  3.036  1.007  H152 XV4 33 
XV4 H151 H2  H 0 0 N N N N N N 10.191 16.463 -5.707  -0.638 3.143  -0.612 H151 XV4 34 
XV4 H172 H3  H 0 0 N N N N N N 7.916  16.794 -5.407  -1.351 2.946  3.030  H172 XV4 35 
XV4 H173 H4  H 0 0 N N N N N N 7.816  17.038 -7.184  -3.083 2.579  2.852  H173 XV4 36 
XV4 H171 H5  H 0 0 N N N N N N 6.673  15.920 -6.365  -1.865 1.358  2.413  H171 XV4 37 
XV4 H221 H6  H 0 0 N N N N N N 9.627  14.044 -2.316  4.228  0.088  2.029  H221 XV4 38 
XV4 H262 H7  H 0 0 N N N N N N 8.280  15.188 1.964   8.703  -1.094 2.896  H262 XV4 39 
XV4 H263 H8  H 0 0 N N N N N N 8.831  13.681 2.771   8.618  -2.126 1.448  H263 XV4 40 
XV4 H261 H9  H 0 0 N N N N N N 10.026 14.770 1.989   9.098  -0.418 1.298  H261 XV4 41 
XV4 H281 H10 H 0 0 N N N N N N 11.126 9.912  2.266   7.641  -1.296 -2.790 H281 XV4 42 
XV4 H041 H11 H 0 0 N N N N N N 14.957 15.480 -7.013  -3.359 -0.848 -1.945 H041 XV4 43 
XV4 H051 H12 H 0 0 N N N N N N 14.804 12.879 -8.562  -5.470 0.345  -0.091 H051 XV4 44 
XV4 H052 H13 H 0 0 N N N N N N 16.339 13.810 -8.504  -5.803 -0.840 -1.378 H052 XV4 45 
XV4 H061 H14 H 0 0 N N N N N N 14.780 12.660 -6.089  -3.825 -1.321 0.904  H061 XV4 46 
XV4 H071 H15 H 0 0 N N N N N N 16.942 14.719 -6.386  -4.823 -2.897 -1.492 H071 XV4 47 
XV4 H072 H16 H 0 0 N N N N N N 15.677 14.550 -5.121  -3.242 -2.999 -0.648 H072 XV4 48 
XV4 H082 H17 H 0 0 N N N N N N 18.301 13.924 -4.668  -5.288 -4.819 -0.207 H082 XV4 49 
XV4 H081 H18 H 0 0 N N N N N N 16.954 13.045 -3.867  -4.098 -4.379 1.053  H081 XV4 50 
XV4 H121 H19 H 0 0 N N N N N N 14.293 16.757 -8.903  -3.337 1.462  -2.934 H121 XV4 51 
XV4 H141 H20 H 0 0 N N N N N N 10.838 13.733 -6.897  -0.723 0.655  1.151  H141 XV4 52 
XV4 H161 H21 H 0 0 N N N N N N 8.563  14.378 -5.795  -2.850 2.498  0.410  H161 XV4 53 
XV4 H181 H22 H 0 0 N N N N N N 7.284  14.158 -7.874  -2.256 4.871  0.004  H181 XV4 54 
XV4 H182 H23 H 0 0 N N N N N N 8.373  15.324 -8.698  -3.246 4.702  1.474  H182 XV4 55 
XV4 H183 H24 H 0 0 N N N N N N 8.999  13.722 -8.181  -1.489 4.954  1.609  H183 XV4 56 
XV4 H271 H25 H 0 0 N N N N N N 9.625  11.733 2.631   8.480  -1.330 -0.480 H271 XV4 57 
XV4 H291 H26 H 0 0 N N N N N N 12.190 9.512  -0.094  5.316  -0.683 -3.265 H291 XV4 58 
XV4 H031 H27 H 0 0 N N N N N N 12.628 14.133 -8.392  -3.161 0.900  0.375  H031 XV4 59 
XV4 H091 H28 H 0 0 N N N N N N 18.536 11.441 -5.527  -6.632 -3.849 1.660  H091 XV4 60 
XV4 H191 H29 H 0 0 N N N N N N 10.421 14.711 -4.182  0.987  0.780  -1.224 H191 XV4 61 
XV4 H311 H30 H 0 0 N N N N N N 12.268 10.707 -2.601  2.902  0.103  -1.931 H311 XV4 62 
XV4 H1   H31 H 0 1 N Y N N N N 14.239 15.293 -9.943  -4.872 0.605  -3.207 H1   XV4 63 
XV4 H2   H32 H 0 1 N N N N N N 15.822 16.592 -10.301 -5.223 2.819  -2.383 H2   XV4 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XV4 O13 C12  SING N N 1  
XV4 C12 C04  SING N N 2  
XV4 C05 C04  SING N N 3  
XV4 C05 C06  SING N N 4  
XV4 C18 C16  SING N N 5  
XV4 C04 N03  SING N N 6  
XV4 N03 C02  SING N N 7  
XV4 O11 C10  DOUB N N 8  
XV4 C10 C06  SING N N 9  
XV4 C10 N09  SING N N 10 
XV4 C16 C15  SING N N 11 
XV4 C16 C17  SING N N 12 
XV4 C06 C07  SING N N 13 
XV4 C15 C14  SING N N 14 
XV4 C02 C14  SING N N 15 
XV4 C02 O01  DOUB N N 16 
XV4 C14 N19  SING N N 17 
XV4 C07 C08  SING N N 18 
XV4 N09 C08  SING N N 19 
XV4 O32 C20  DOUB N N 20 
XV4 N19 C20  SING N N 21 
XV4 C20 C21  SING N N 22 
XV4 C21 N31  SING Y N 23 
XV4 C21 C22  DOUB Y N 24 
XV4 N31 C30  SING Y N 25 
XV4 C22 C23  SING Y N 26 
XV4 C30 C23  DOUB Y N 27 
XV4 C30 C29  SING Y N 28 
XV4 C23 C24  SING Y N 29 
XV4 C29 C28  DOUB Y N 30 
XV4 C24 O25  SING N N 31 
XV4 C24 C27  DOUB Y N 32 
XV4 O25 C26  SING N N 33 
XV4 C28 C27  SING Y N 34 
XV4 C15 H152 SING N N 35 
XV4 C15 H151 SING N N 36 
XV4 C17 H172 SING N N 37 
XV4 C17 H173 SING N N 38 
XV4 C17 H171 SING N N 39 
XV4 C22 H221 SING N N 40 
XV4 C26 H262 SING N N 41 
XV4 C26 H263 SING N N 42 
XV4 C26 H261 SING N N 43 
XV4 C28 H281 SING N N 44 
XV4 C04 H041 SING N N 45 
XV4 C05 H051 SING N N 46 
XV4 C05 H052 SING N N 47 
XV4 C06 H061 SING N N 48 
XV4 C07 H071 SING N N 49 
XV4 C07 H072 SING N N 50 
XV4 C08 H082 SING N N 51 
XV4 C08 H081 SING N N 52 
XV4 C12 H121 SING N N 53 
XV4 C14 H141 SING N N 54 
XV4 C16 H161 SING N N 55 
XV4 C18 H181 SING N N 56 
XV4 C18 H182 SING N N 57 
XV4 C18 H183 SING N N 58 
XV4 C27 H271 SING N N 59 
XV4 C29 H291 SING N N 60 
XV4 N03 H031 SING N N 61 
XV4 N09 H091 SING N N 62 
XV4 N19 H191 SING N N 63 
XV4 N31 H311 SING N N 64 
XV4 C12 H1   SING N N 65 
XV4 O13 H2   SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XV4 SMILES           ACDLabs              12.01 "C3(C(CC(NC(C(CC(C)C)NC(c1nc2c(c1)c(OC)ccc2)=O)=O)CO)CCN3)=O"                                                                                                                                                 
XV4 InChI            InChI                1.03  "InChI=1S/C23H32N4O5/c1-13(2)9-18(22(30)25-15(12-28)10-14-7-8-24-21(14)29)27-23(31)19-11-16-17(26-19)5-4-6-20(16)32-3/h4-6,11,13-15,18,26,28H,7-10,12H2,1-3H3,(H,24,29)(H,25,30)(H,27,31)/t14-,15-,18-/m0/s1" 
XV4 InChIKey         InChI                1.03  WHTWOUANZWYZGR-MPGHIAIKSA-N                                                                                                                                                                                   
XV4 SMILES_CANONICAL CACTVS               3.385 "COc1cccc2[nH]c(cc12)C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O"                                                                                                                                      
XV4 SMILES           CACTVS               3.385 "COc1cccc2[nH]c(cc12)C(=O)N[CH](CC(C)C)C(=O)N[CH](CO)C[CH]3CCNC3=O"                                                                                                                                           
XV4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)CO)NC(=O)c2cc3c([nH]2)cccc3OC"                                                                                                                                     
XV4 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)CO)NC(=O)c2cc3c([nH]2)cccc3OC"                                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XV4 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(2S)-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide"                                     
XV4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-methoxy-~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]-1~{H}-indole-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XV4 "Create component" 2021-01-14 RCSB 
XV4 "Initial release"  2021-07-07 RCSB 
XV4 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            XV4 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C12 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
