data_XO4
# 
_chem_comp.id                                    XO4 
_chem_comp.name                                  "(5S)-5-butyl-4-({1-[(4-fluorophenyl)methyl]-1H-imidazol-5-yl}methyl)-1-[3-(trifluoromethoxy)phenyl]piperazin-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H28 F4 N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-12-22 
_chem_comp.pdbx_modified_date                    2022-11-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        504.520 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XO4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7L40 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XO4 C10 C1  C 0 1 N N N 36.835 -36.630 -3.799  0.744  -2.735 -1.495 C10 XO4 1  
XO4 C13 C2  C 0 1 Y N N 37.517 -33.367 -5.139  2.801  -0.546 -1.468 C13 XO4 2  
XO4 C20 C3  C 0 1 Y N N 34.915 -34.381 -2.004  3.721  3.578  -1.051 C20 XO4 3  
XO4 C21 C4  C 0 1 Y N N 33.888 -35.314 -1.926  4.235  4.315  -0.001 C21 XO4 4  
XO4 C22 C5  C 0 1 Y N N 32.952 -35.434 -2.974  3.750  4.123  1.282  C22 XO4 5  
XO4 C24 C6  C 0 1 Y N N 33.057 -34.607 -4.116  2.750  3.193  1.511  C24 XO4 6  
XO4 C26 C7  C 0 1 Y N N 33.788 -38.550 -5.464  -2.544 -1.521 -0.126 C26 XO4 7  
XO4 C28 C8  C 0 1 Y N N 31.421 -38.911 -5.879  -4.236 0.158  0.158  C28 XO4 8  
XO4 C01 C9  C 0 1 N N N 38.272 -39.088 -9.933  5.155  -3.961 3.099  C01 XO4 9  
XO4 C02 C10 C 0 1 N N N 38.518 -38.640 -8.476  3.907  -3.085 3.221  C02 XO4 10 
XO4 C03 C11 C 0 1 N N N 37.400 -37.718 -7.916  3.036  -3.262 1.975  C03 XO4 11 
XO4 C04 C12 C 0 1 N N N 37.691 -37.195 -6.507  1.788  -2.386 2.097  C04 XO4 12 
XO4 C05 C13 C 0 1 N N S 36.641 -36.039 -6.033  0.858  -2.657 0.912  C05 XO4 13 
XO4 C06 C14 C 0 1 N N N 35.241 -36.566 -6.169  -0.408 -1.816 1.054  C06 XO4 14 
XO4 C08 C15 C 0 1 N N N 35.665 -37.699 -3.977  -0.682 -2.286 -1.344 C08 XO4 15 
XO4 C12 C16 C 0 1 N N N 37.865 -34.806 -4.589  1.781  -0.840 -0.399 C12 XO4 16 
XO4 C14 C17 C 0 1 Y N N 37.908 -32.853 -6.392  3.731  -1.395 -1.945 C14 XO4 17 
XO4 C16 C18 C 0 1 Y N N 36.721 -31.326 -5.366  3.983  0.466  -3.008 C16 XO4 18 
XO4 C18 C19 C 0 1 N N N 36.184 -32.529 -3.175  2.160  1.850  -1.968 C18 XO4 19 
XO4 C19 C20 C 0 1 Y N N 35.032 -33.555 -3.146  2.719  2.653  -0.822 C19 XO4 20 
XO4 C25 C21 C 0 1 Y N N 34.097 -33.666 -4.206  2.238  2.457  0.459  C25 XO4 21 
XO4 C27 C22 C 0 1 Y N N 32.498 -38.053 -5.624  -2.898 -0.200 0.111  C27 XO4 22 
XO4 C29 C23 C 0 1 Y N N 31.654 -40.293 -5.941  -5.219 -0.804 -0.032 C29 XO4 23 
XO4 C30 C24 C 0 1 Y N N 32.949 -40.801 -5.765  -4.864 -2.118 -0.274 C30 XO4 24 
XO4 C31 C25 C 0 1 Y N N 34.022 -39.934 -5.527  -3.532 -2.479 -0.322 C31 XO4 25 
XO4 C33 C26 C 0 1 N N N 29.922 -37.068 -6.556  -5.984 1.748  0.426  C33 XO4 26 
XO4 F23 F1  F 0 1 N N N 31.946 -36.357 -2.851  4.252  4.842  2.309  F23 XO4 27 
XO4 F34 F2  F 0 1 N N N 28.640 -36.906 -7.034  -6.562 1.418  -0.804 F34 XO4 28 
XO4 F35 F3  F 0 1 N N N 30.744 -36.822 -7.617  -6.163 3.113  0.674  F35 XO4 29 
XO4 F36 F4  F 0 1 N N N 30.179 -36.163 -5.549  -6.593 1.005  1.442  F36 XO4 30 
XO4 N07 N1  N 0 1 N N N 34.880 -37.617 -5.208  -1.195 -1.887 -0.175 N07 XO4 31 
XO4 N11 N2  N 0 1 N N N 36.860 -35.618 -4.741  1.534  -2.286 -0.341 N11 XO4 32 
XO4 N15 N3  N 0 1 Y N N 37.422 -31.615 -6.490  4.439  -0.750 -2.884 N15 XO4 33 
XO4 N17 N4  N 0 1 Y N N 36.800 -32.433 -4.547  2.956  0.633  -2.146 N17 XO4 34 
XO4 O09 O1  O 0 1 N N N 35.434 -38.533 -3.135  -1.398 -2.284 -2.322 O09 XO4 35 
XO4 O32 O2  O 0 1 N N N 30.082 -38.403 -6.042  -4.586 1.450  0.391  O32 XO4 36 
XO4 H1  H1  H 0 1 N N N 37.795 -37.165 -3.850  0.776  -3.822 -1.556 H1  XO4 37 
XO4 H2  H2  H 0 1 N N N 36.725 -36.168 -2.807  1.162  -2.309 -2.408 H2  XO4 38 
XO4 H3  H3  H 0 1 N N N 35.623 -34.287 -1.194  4.099  3.728  -2.051 H3  XO4 39 
XO4 H4  H4  H 0 1 N N N 33.806 -35.951 -1.058  5.015  5.040  -0.181 H4  XO4 40 
XO4 H5  H5  H 0 1 N N N 32.339 -34.698 -4.918  2.372  3.042  2.511  H5  XO4 41 
XO4 H6  H6  H 0 1 N N N 39.098 -39.735 -10.263 4.859  -5.006 3.009  H6  XO4 42 
XO4 H7  H7  H 0 1 N N N 37.325 -39.645 -9.990  5.721  -3.667 2.216  H7  XO4 43 
XO4 H8  H8  H 0 1 N N N 38.217 -38.203 -10.584 5.775  -3.835 3.987  H8  XO4 44 
XO4 H9  H9  H 0 1 N N N 38.581 -39.536 -7.842  3.341  -3.380 4.105  H9  XO4 45 
XO4 H10 H10 H 0 1 N N N 39.472 -38.095 -8.436  4.203  -2.040 3.311  H10 XO4 46 
XO4 H11 H11 H 0 1 N N N 37.288 -36.857 -8.591  3.602  -2.968 1.092  H11 XO4 47 
XO4 H12 H12 H 0 1 N N N 36.459 -38.288 -7.889  2.740  -4.307 1.885  H12 XO4 48 
XO4 H13 H13 H 0 1 N N N 37.631 -38.036 -5.800  1.269  -2.620 3.027  H13 XO4 49 
XO4 H14 H14 H 0 1 N N N 38.707 -36.775 -6.491  2.079  -1.336 2.097  H14 XO4 50 
XO4 H15 H15 H 0 1 N N N 36.761 -35.196 -6.729  0.596  -3.715 0.887  H15 XO4 51 
XO4 H16 H16 H 0 1 N N N 34.545 -35.725 -6.034  -1.004 -2.196 1.884  H16 XO4 52 
XO4 H17 H17 H 0 1 N N N 35.127 -36.977 -7.183  -0.134 -0.780 1.252  H17 XO4 53 
XO4 H18 H18 H 0 1 N N N 38.733 -35.201 -5.138  2.156  -0.496 0.566  H18 XO4 54 
XO4 H19 H19 H 0 1 N N N 38.110 -34.733 -3.519  0.851  -0.321 -0.632 H19 XO4 55 
XO4 H20 H20 H 0 1 N N N 38.495 -33.369 -7.138  3.882  -2.416 -1.627 H20 XO4 56 
XO4 H21 H21 H 0 1 N N N 36.200 -30.404 -5.153  4.359  1.214  -3.691 H21 XO4 57 
XO4 H22 H22 H 0 1 N N N 36.957 -32.838 -2.456  1.127  1.579  -1.751 H22 XO4 58 
XO4 H23 H23 H 0 1 N N N 35.792 -31.542 -2.889  2.196  2.445  -2.880 H23 XO4 59 
XO4 H24 H24 H 0 1 N N N 34.183 -33.032 -5.076  1.458  1.731  0.637  H24 XO4 60 
XO4 H25 H25 H 0 1 N N N 32.325 -36.990 -5.550  -2.132 0.547  0.259  H25 XO4 61 
XO4 H26 H26 H 0 1 N N N 30.832 -40.969 -6.125  -6.261 -0.524 0.005  H26 XO4 62 
XO4 H27 H27 H 0 1 N N N 33.119 -41.866 -5.813  -5.630 -2.864 -0.421 H27 XO4 63 
XO4 H28 H28 H 0 1 N N N 35.020 -40.325 -5.393  -3.257 -3.506 -0.511 H28 XO4 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XO4 C01 C02 SING N N 1  
XO4 C02 C03 SING N N 2  
XO4 C03 C04 SING N N 3  
XO4 F35 C33 SING N N 4  
XO4 F34 C33 SING N N 5  
XO4 C33 O32 SING N N 6  
XO4 C33 F36 SING N N 7  
XO4 C04 C05 SING N N 8  
XO4 N15 C14 SING Y N 9  
XO4 N15 C16 DOUB Y N 10 
XO4 C14 C13 DOUB Y N 11 
XO4 C06 C05 SING N N 12 
XO4 C06 N07 SING N N 13 
XO4 O32 C28 SING N N 14 
XO4 C05 N11 SING N N 15 
XO4 C29 C28 DOUB Y N 16 
XO4 C29 C30 SING Y N 17 
XO4 C28 C27 SING Y N 18 
XO4 C30 C31 DOUB Y N 19 
XO4 C27 C26 DOUB Y N 20 
XO4 C31 C26 SING Y N 21 
XO4 C26 N07 SING N N 22 
XO4 C16 N17 SING Y N 23 
XO4 N07 C08 SING N N 24 
XO4 C13 C12 SING N N 25 
XO4 C13 N17 SING Y N 26 
XO4 N11 C12 SING N N 27 
XO4 N11 C10 SING N N 28 
XO4 N17 C18 SING N N 29 
XO4 C25 C24 DOUB Y N 30 
XO4 C25 C19 SING Y N 31 
XO4 C24 C22 SING Y N 32 
XO4 C08 C10 SING N N 33 
XO4 C08 O09 DOUB N N 34 
XO4 C18 C19 SING N N 35 
XO4 C19 C20 DOUB Y N 36 
XO4 C22 F23 SING N N 37 
XO4 C22 C21 DOUB Y N 38 
XO4 C20 C21 SING Y N 39 
XO4 C10 H1  SING N N 40 
XO4 C10 H2  SING N N 41 
XO4 C20 H3  SING N N 42 
XO4 C21 H4  SING N N 43 
XO4 C24 H5  SING N N 44 
XO4 C01 H6  SING N N 45 
XO4 C01 H7  SING N N 46 
XO4 C01 H8  SING N N 47 
XO4 C02 H9  SING N N 48 
XO4 C02 H10 SING N N 49 
XO4 C03 H11 SING N N 50 
XO4 C03 H12 SING N N 51 
XO4 C04 H13 SING N N 52 
XO4 C04 H14 SING N N 53 
XO4 C05 H15 SING N N 54 
XO4 C06 H16 SING N N 55 
XO4 C06 H17 SING N N 56 
XO4 C12 H18 SING N N 57 
XO4 C12 H19 SING N N 58 
XO4 C14 H20 SING N N 59 
XO4 C16 H21 SING N N 60 
XO4 C18 H22 SING N N 61 
XO4 C18 H23 SING N N 62 
XO4 C25 H24 SING N N 63 
XO4 C27 H25 SING N N 64 
XO4 C29 H26 SING N N 65 
XO4 C30 H27 SING N N 66 
XO4 C31 H28 SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XO4 SMILES           ACDLabs              12.01 "C2C(=O)N(c1cc(ccc1)OC(F)(F)F)CC(CCCC)N2Cc3n(cnc3)Cc4ccc(F)cc4"                                                                                                                     
XO4 InChI            InChI                1.03  "InChI=1S/C26H28F4N4O2/c1-2-3-5-22-16-34(21-6-4-7-24(12-21)36-26(28,29)30)25(35)17-32(22)15-23-13-31-18-33(23)14-19-8-10-20(27)11-9-19/h4,6-13,18,22H,2-3,5,14-17H2,1H3/t22-/m0/s1" 
XO4 InChIKey         InChI                1.03  OUYZKEOWZZQKSB-QFIPXVFZSA-N                                                                                                                                                         
XO4 SMILES_CANONICAL CACTVS               3.385 "CCCC[C@H]1CN(C(=O)CN1Cc2cncn2Cc3ccc(F)cc3)c4cccc(OC(F)(F)F)c4"                                                                                                                     
XO4 SMILES           CACTVS               3.385 "CCCC[CH]1CN(C(=O)CN1Cc2cncn2Cc3ccc(F)cc3)c4cccc(OC(F)(F)F)c4"                                                                                                                      
XO4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC[C@H]1CN(C(=O)CN1Cc2cncn2Cc3ccc(cc3)F)c4cccc(c4)OC(F)(F)F"                                                                                                                     
XO4 SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCC1CN(C(=O)CN1Cc2cncn2Cc3ccc(cc3)F)c4cccc(c4)OC(F)(F)F"                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XO4 "SYSTEMATIC NAME" ACDLabs              12.01 "(5S)-5-butyl-4-({1-[(4-fluorophenyl)methyl]-1H-imidazol-5-yl}methyl)-1-[3-(trifluoromethoxy)phenyl]piperazin-2-one"  
XO4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(5~{S})-5-butyl-4-[[3-[(4-fluorophenyl)methyl]imidazol-4-yl]methyl]-1-[3-(trifluoromethyloxy)phenyl]piperazin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XO4 "Create component" 2020-12-22 RCSB 
XO4 "Initial release"  2022-11-09 RCSB 
# 
