data_XB4
# 
_chem_comp.id                                    XB4 
_chem_comp.name                                  "3-(2-ethoxy-5-fluoranyl-pyridin-3-yl)-7-propan-2-yl-1~{H}-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H19 F N2 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-06 
_chem_comp.pdbx_modified_date                    2024-06-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        342.364 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XB4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8P9P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XB4 C11  C1  C 0 1 Y N N N N N -21.853 -11.913 9.971  -0.156 0.375  -0.078 C11  XB4 1  
XB4 C12  C2  C 0 1 Y N N N N N -22.283 -10.699 10.537 0.363  1.062  1.005  C12  XB4 2  
XB4 C13  C3  C 0 1 N N N N N N -22.470 -9.382  9.860  -0.420 1.781  2.012  C13  XB4 3  
XB4 C10  C4  C 0 1 Y N N N N N -21.337 -12.145 8.621  -1.584 0.235  -0.436 C10  XB4 4  
XB4 C01  C5  C 0 1 N N N N N N -24.235 -15.767 8.294  -1.765 -3.741 2.245  C01  XB4 5  
XB4 C02  C6  C 0 1 N N N N N N -23.197 -15.058 7.471  -2.588 -2.816 1.347  C02  XB4 6  
XB4 C04  C7  C 0 1 Y N N N N N -21.732 -13.158 7.795  -2.342 -0.835 0.061  C04  XB4 7  
XB4 C06  C8  C 0 1 Y N N N N N -20.312 -12.576 6.117  -4.223 -0.091 -1.050 C06  XB4 8  
XB4 C07  C9  C 0 1 Y N N N N N -19.810 -11.565 6.907  -3.544 0.995  -1.575 C07  XB4 9  
XB4 C09  C10 C 0 1 Y N N N N N -20.325 -11.308 8.134  -2.203 1.171  -1.270 C09  XB4 10 
XB4 C17  C11 C 0 1 Y N N N N N -22.477 -12.183 12.163 2.141  0.213  -0.100 C17  XB4 11 
XB4 C18  C12 C 0 1 Y N N N N N -22.770 -12.802 13.382 3.394  -0.178 -0.568 C18  XB4 12 
XB4 C19  C13 C 0 1 N N N N N N -23.322 -12.061 14.590 4.640  0.234  0.173  C19  XB4 13 
XB4 C20  C14 C 0 1 N N N N N N -22.613 -12.402 15.866 5.399  -1.014 0.628  C20  XB4 14 
XB4 C21  C15 C 0 1 N N N N N N -24.852 -12.212 14.676 5.532  1.064  -0.752 C21  XB4 15 
XB4 C22  C16 C 0 1 Y N N N N N -22.536 -14.173 13.443 3.490  -0.943 -1.709 C22  XB4 16 
XB4 C23  C17 C 0 1 Y N N N N N -22.032 -14.890 12.318 2.351  -1.331 -2.401 C23  XB4 17 
XB4 C24  C18 C 0 1 Y N N N N N -21.763 -14.242 11.101 1.112  -0.959 -1.961 C24  XB4 18 
XB4 C25  C19 C 0 1 Y N N N N N -21.999 -12.857 11.032 0.990  -0.183 -0.806 C25  XB4 19 
XB4 F08  F1  F 0 1 N N N N N N -18.863 -10.738 6.379  -4.180 1.872  -2.382 F08  XB4 20 
XB4 N05  N1  N 0 1 Y N N N N N -21.265 -13.395 6.600  -3.618 -0.958 -0.260 N05  XB4 21 
XB4 N16  N2  N 0 1 Y N N N N N -22.631 -10.851 11.826 1.741  0.959  0.983  N16  XB4 22 
XB4 O03  O1  O 0 1 N N N N N N -22.763 -13.947 8.251  -1.761 -1.750 0.875  O03  XB4 23 
XB4 O14  O2  O 0 1 N N N N N N -22.336 -8.311  10.518 0.205  2.415  3.026  O14  XB4 24 
XB4 O15  O3  O 0 1 N N N N N N -22.862 -9.416  8.652  -1.633 1.806  1.934  O15  XB4 25 
XB4 H012 H1  H 0 0 N N N N N N -24.610 -16.640 7.740  -2.396 -4.554 2.605  H012 XB4 26 
XB4 H011 H2  H 0 0 N N N N N N -23.787 -16.100 9.242  -0.931 -4.153 1.676  H011 XB4 27 
XB4 H013 H3  H 0 0 N N N N N N -25.068 -15.080 8.503  -1.381 -3.176 3.095  H013 XB4 28 
XB4 H021 H4  H 0 0 N N N N N N -23.634 -14.711 6.523  -2.972 -3.381 0.498  H021 XB4 29 
XB4 H022 H5  H 0 0 N N N N N N -22.352 -15.730 7.261  -3.422 -2.405 1.916  H022 XB4 30 
XB4 H061 H6  H 0 0 N N N N N N -19.941 -12.711 5.112  -5.268 -0.229 -1.286 H061 XB4 31 
XB4 H091 H7  H 0 0 N N N N N N -19.964 -10.478 8.722  -1.651 2.010  -1.666 H091 XB4 32 
XB4 H191 H8  H 0 0 N N N N N N -23.134 -10.993 14.406 4.365  0.830  1.043  H191 XB4 33 
XB4 H202 H9  H 0 0 N N N N N N -23.059 -11.835 16.697 5.674  -1.610 -0.242 H202 XB4 34 
XB4 H201 H10 H 0 0 N N N N N N -22.712 -13.480 16.063 6.300  -0.716 1.164  H201 XB4 35 
XB4 H203 H11 H 0 0 N N N N N N -21.548 -12.142 15.774 4.763  -1.605 1.288  H203 XB4 36 
XB4 H213 H12 H 0 0 N N N N N N -25.226 -11.668 15.556 4.991  1.953  -1.077 H213 XB4 37 
XB4 H211 H13 H 0 0 N N N N N N -25.313 -11.799 13.767 6.433  1.362  -0.217 H211 XB4 38 
XB4 H212 H14 H 0 0 N N N N N N -25.111 -13.277 14.766 5.807  0.468  -1.623 H212 XB4 39 
XB4 H221 H15 H 0 0 N N N N N N -22.740 -14.704 14.361 4.463  -1.245 -2.069 H221 XB4 40 
XB4 H231 H16 H 0 0 N N N N N N -21.854 -15.952 12.403 2.444  -1.931 -3.294 H231 XB4 41 
XB4 H241 H17 H 0 0 N N N N N N -21.388 -14.788 10.248 0.230  -1.263 -2.504 H241 XB4 42 
XB4 H161 H18 H 0 0 N N N N N N -22.947 -10.125 12.437 2.338  1.356  1.637  H161 XB4 43 
XB4 H1   H19 H 0 1 N N N N N N -22.571 -7.571  9.971  -0.395 2.862  3.639  H1   XB4 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XB4 C06 N05  DOUB Y N 1  
XB4 C06 C07  SING Y N 2  
XB4 F08 C07  SING N N 3  
XB4 N05 C04  SING Y N 4  
XB4 C07 C09  DOUB Y N 5  
XB4 C02 O03  SING N N 6  
XB4 C02 C01  SING N N 7  
XB4 C04 O03  SING N N 8  
XB4 C04 C10  DOUB Y N 9  
XB4 C09 C10  SING Y N 10 
XB4 C10 C11  SING N N 11 
XB4 O15 C13  DOUB N N 12 
XB4 C13 O14  SING N N 13 
XB4 C13 C12  SING N N 14 
XB4 C11 C12  DOUB Y N 15 
XB4 C11 C25  SING Y N 16 
XB4 C12 N16  SING Y N 17 
XB4 C25 C24  DOUB Y N 18 
XB4 C25 C17  SING Y N 19 
XB4 C24 C23  SING Y N 20 
XB4 N16 C17  SING Y N 21 
XB4 C17 C18  DOUB Y N 22 
XB4 C23 C22  DOUB Y N 23 
XB4 C18 C22  SING Y N 24 
XB4 C18 C19  SING N N 25 
XB4 C19 C21  SING N N 26 
XB4 C19 C20  SING N N 27 
XB4 C01 H012 SING N N 28 
XB4 C01 H011 SING N N 29 
XB4 C01 H013 SING N N 30 
XB4 C02 H021 SING N N 31 
XB4 C02 H022 SING N N 32 
XB4 C06 H061 SING N N 33 
XB4 C09 H091 SING N N 34 
XB4 C19 H191 SING N N 35 
XB4 C20 H202 SING N N 36 
XB4 C20 H201 SING N N 37 
XB4 C20 H203 SING N N 38 
XB4 C21 H213 SING N N 39 
XB4 C21 H211 SING N N 40 
XB4 C21 H212 SING N N 41 
XB4 C22 H221 SING N N 42 
XB4 C23 H231 SING N N 43 
XB4 C24 H241 SING N N 44 
XB4 N16 H161 SING N N 45 
XB4 O14 H1   SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XB4 InChI            InChI                1.06  "InChI=1S/C19H19FN2O3/c1-4-25-18-14(8-11(20)9-21-18)15-13-7-5-6-12(10(2)3)16(13)22-17(15)19(23)24/h5-10,22H,4H2,1-3H3,(H,23,24)" 
XB4 InChIKey         InChI                1.06  JXCQXSXBRUCDNT-UHFFFAOYSA-N                                                                                                      
XB4 SMILES_CANONICAL CACTVS               3.385 "CCOc1ncc(F)cc1c2c([nH]c3c(cccc23)C(C)C)C(O)=O"                                                                                  
XB4 SMILES           CACTVS               3.385 "CCOc1ncc(F)cc1c2c([nH]c3c(cccc23)C(C)C)C(O)=O"                                                                                  
XB4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOc1c(cc(cn1)F)c2c3cccc(c3[nH]c2C(=O)O)C(C)C"                                                                                  
XB4 SMILES           "OpenEye OEToolkits" 2.0.7 "CCOc1c(cc(cn1)F)c2c3cccc(c3[nH]c2C(=O)O)C(C)C"                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           XB4 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-(2-ethoxy-5-fluoranyl-pyridin-3-yl)-7-propan-2-yl-1~{H}-indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XB4 "Create component" 2023-06-06 PDBE 
XB4 "Initial release"  2024-06-26 RCSB 
# 
