data_XA4
#

_chem_comp.id                                   XA4
_chem_comp.name                                 "(20R)-10,15,20-trimethyl-2-[(4-methylpiperazin-1-yl)methyl]-18,19,20,21-tetrahydro-15H,17H-12,8-(metheno)pyrazolo[3',4':2,3][1,5,10,12]oxatriazacycloheptadecino[12,11-a]benzimidazol-7(6H)-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C30 H38 N8 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-07
_chem_comp.pdbx_modified_date                   2022-01-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       542.675
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XA4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7KXZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XA4  C18  C1   C  0  1  Y  N  N  -1.763  52.446  -26.847    7.227  -0.855   0.575  C18  XA4   1  
XA4  C16  C2   C  0  1  N  N  N  -3.827  49.507  -26.105    5.839  -4.132  -0.062  C16  XA4   2  
XA4  C14  C3   C  0  1  N  N  N  -0.563  49.774  -19.410   -0.732  -1.239   0.121  C14  XA4   3  
XA4  C13  C4   C  0  1  N  N  N  -2.944  50.408  -18.818   -0.781  -3.436  -1.067  C13  XA4   4  
XA4  C12  C5   C  0  1  N  N  R  -1.961  50.159  -19.955   -0.254  -2.001  -1.117  C12  XA4   5  
XA4  C10  C6   C  0  1  N  N  N  -3.444  49.534  -21.960    1.798  -3.078  -0.177  C10  XA4   6  
XA4  C11  C7   C  0  1  N  N  N  -2.397  49.072  -20.942    1.276  -2.021  -1.151  C11  XA4   7  
XA4  N19  N1   N  0  1  Y  N  N   0.079  54.363  -25.256    5.981   1.894   0.634  N19  XA4   8  
XA4  C20  C8   C  0  1  Y  N  N   0.952  55.166  -24.567    5.444   3.099   0.665  C20  XA4   9  
XA4  C21  C9   C  0  1  N  N  N   1.419  56.471  -25.216    6.330   4.298   0.885  C21  XA4  10  
XA4  C22  C10  C  0  1  Y  N  N   1.422  54.812  -23.274    4.084   3.282   0.498  C22  XA4  11  
XA4  C24  C11  C  0  1  N  N  N   0.821  51.885  -19.332   -0.191   1.195  -0.215  C24  XA4  12  
XA4  C26  C12  C  0  1  Y  N  N   0.606  50.843  -17.281   -2.293   0.607  -0.667  C26  XA4  13  
XA4  C27  C13  C  0  1  Y  N  N   0.319  49.979  -16.212   -3.510  -0.020  -0.897  C27  XA4  14  
XA4  C28  C14  C  0  1  Y  N  N   0.812  50.267  -14.926   -4.590   0.718  -1.338  C28  XA4  15  
XA4  C29  C15  C  0  1  N  N  N   0.476  49.327  -13.765   -5.912   0.040  -1.590  C29  XA4  16  
XA4  N30  N2   N  0  1  N  N  N  -0.994  49.466  -13.526   -6.714   0.058  -0.360  N30  XA4  17  
XA4  C31  C16  C  0  1  N  N  N  -1.346  50.691  -12.731   -6.094  -0.769   0.685  C31  XA4  18  
XA4  C02  C17  C  0  1  N  N  N   1.378  53.158  -21.314    1.796   2.279   0.112  C02  XA4  19  
XA4  C03  C18  C  0  1  Y  N  N   1.030  53.617  -22.683    3.268   2.165   0.306  C03  XA4  20  
XA4  C04  C19  C  0  1  Y  N  N   0.095  52.817  -23.405    3.864   0.903   0.282  C04  XA4  21  
XA4  C05  C20  C  0  1  Y  N  N  -0.373  53.186  -24.712    5.246   0.808   0.443  C05  XA4  22  
XA4  C06  C21  C  0  1  Y  N  N  -1.350  52.282  -25.438    5.872  -0.534   0.388  C06  XA4  23  
XA4  C07  C22  C  0  1  Y  N  N  -2.128  51.153  -25.072    5.200  -1.717   0.129  C07  XA4  24  
XA4  C09  C23  C  0  1  N  N  N  -3.151  50.826  -22.813    3.325  -3.142  -0.253  C09  XA4  25  
XA4  C32  C24  C  0  1  N  N  N  -2.764  50.738  -12.168   -6.916  -0.661   1.972  C32  XA4  26  
XA4  C34  C25  C  0  1  N  N  N  -4.522  49.543  -11.134   -9.097  -1.079   2.939  C34  XA4  27  
XA4  C35  C26  C  0  1  N  N  N  -2.966  48.312  -12.410   -8.914  -0.270   0.663  C35  XA4  28  
XA4  C36  C27  C  0  1  N  N  N  -1.544  48.214  -12.939   -8.093  -0.379  -0.623  C36  XA4  29  
XA4  C37  C28  C  0  1  Y  N  N   1.580  51.439  -14.748   -4.463   2.082  -1.549  C37  XA4  30  
XA4  C38  C29  C  0  1  Y  N  N   1.880  52.322  -15.806   -3.258   2.716  -1.319  C38  XA4  31  
XA4  C39  C30  C  0  1  Y  N  N   1.373  51.996  -17.086   -2.164   1.982  -0.877  C39  XA4  32  
XA4  N15  N3   N  0  1  Y  N  N  -2.891  50.676  -26.096    6.111  -2.710   0.159  N15  XA4  33  
XA4  N17  N4   N  0  1  Y  N  N  -2.681  51.473  -27.221    7.365  -2.147   0.433  N17  XA4  34  
XA4  N23  N5   N  0  1  N  N  N   0.652  52.233  -20.557    1.112   1.097   0.094  N23  XA4  35  
XA4  N25  N6   N  0  1  N  N  N   0.242  50.771  -18.635   -1.053   0.142  -0.241  N25  XA4  36  
XA4  N33  N7   N  0  1  N  N  N  -3.108  49.460  -11.469   -8.294  -1.097   1.708  N33  XA4  37  
XA4  N40  N8   N  0  1  N  N  N   1.490  52.649  -18.309   -0.849   2.325  -0.571  N40  XA4  38  
XA4  O01  O1   O  0  1  N  N  N   2.375  53.668  -20.704    1.239   3.354  -0.022  O01  XA4  39  
XA4  O08  O2   O  0  1  N  N  N  -2.091  50.584  -23.768    3.871  -1.831  -0.110  O08  XA4  40  
XA4  H1   H1   H  0  1  N  N  N  -1.398  53.223  -27.502    8.020  -0.154   0.793  H1   XA4  41  
XA4  H2   H2   H  0  1  N  N  N  -4.282  49.409  -27.101    5.629  -4.302  -1.118  H2   XA4  42  
XA4  H3   H3   H  0  1  N  N  N  -3.270  48.589  -25.865    6.708  -4.719   0.234  H3   XA4  43  
XA4  H4   H4   H  0  1  N  N  N  -4.616  49.664  -25.355    4.977  -4.434   0.533  H4   XA4  44  
XA4  H5   H5   H  0  1  N  N  N  -0.708  48.904  -18.753   -1.620  -1.724   0.524  H5   XA4  45  
XA4  H6   H6   H  0  1  N  N  N   0.046  49.481  -20.278    0.057  -1.243   0.874  H6   XA4  46  
XA4  H7   H7   H  0  1  N  N  N  -2.553  51.199  -18.161   -1.871  -3.423  -1.046  H7   XA4  47  
XA4  H8   H8   H  0  1  N  N  N  -3.913  50.722  -19.233   -0.442  -3.979  -1.949  H8   XA4  48  
XA4  H9   H9   H  0  1  N  N  N  -3.076  49.483  -18.238   -0.407  -3.930  -0.170  H9   XA4  49  
XA4  H10  H10  H  0  1  N  N  N  -1.851  51.098  -20.517   -0.631  -1.508  -2.013  H10  XA4  50  
XA4  H11  H11  H  0  1  N  N  N  -4.376  49.717  -21.405    1.496  -2.817   0.837  H11  XA4  51  
XA4  H12  H12  H  0  1  N  N  N  -3.595  48.706  -22.668    1.381  -4.050  -0.440  H12  XA4  52  
XA4  H13  H13  H  0  1  N  N  N  -2.820  48.234  -20.368    1.613  -2.259  -2.160  H13  XA4  53  
XA4  H14  H14  H  0  1  N  N  N  -1.508  48.729  -21.492    1.658  -1.042  -0.863  H14  XA4  54  
XA4  H15  H15  H  0  1  N  N  N   0.952  56.576  -26.206    6.679   4.674  -0.076  H15  XA4  55  
XA4  H16  H16  H  0  1  N  N  N   1.128  57.321  -24.581    5.766   5.078   1.397  H16  XA4  56  
XA4  H17  H17  H  0  1  N  N  N   2.513  56.454  -25.327    7.186   4.010   1.495  H17  XA4  57  
XA4  H18  H18  H  0  1  N  N  N   2.089  55.477  -22.746    3.658   4.274   0.516  H18  XA4  58  
XA4  H19  H19  H  0  1  N  N  N  -0.279  49.095  -16.377   -3.612  -1.082  -0.731  H19  XA4  59  
XA4  H20  H20  H  0  1  N  N  N   0.722  48.289  -14.032   -6.447   0.567  -2.380  H20  XA4  60  
XA4  H21  H21  H  0  1  N  N  N   1.038  49.617  -12.865   -5.738  -0.992  -1.896  H21  XA4  61  
XA4  H23  H23  H  0  1  N  N  N  -0.646  50.756  -11.885   -6.067  -1.808   0.358  H23  XA4  62  
XA4  H24  H24  H  0  1  N  N  N  -1.214  51.566  -13.385   -5.079  -0.419   0.871  H24  XA4  63  
XA4  H25  H25  H  0  1  N  N  N  -0.272  51.906  -22.955    3.265   0.016   0.141  H25  XA4  64  
XA4  H26  H26  H  0  1  N  N  N  -2.850  51.642  -22.139    3.701  -3.780   0.547  H26  XA4  65  
XA4  H27  H27  H  0  1  N  N  N  -4.064  51.115  -23.354    3.623  -3.556  -1.216  H27  XA4  66  
XA4  H28  H28  H  0  1  N  N  N  -2.839  51.570  -11.453   -6.474  -1.296   2.740  H28  XA4  67  
XA4  H29  H29  H  0  1  N  N  N  -3.473  50.898  -12.993   -6.921   0.374   2.314  H29  XA4  68  
XA4  H30  H30  H  0  1  N  N  N  -4.686  50.379  -10.438   -9.121  -0.066   3.342  H30  XA4  69  
XA4  H31  H31  H  0  1  N  N  N  -5.107  49.710  -12.051  -10.112  -1.406   2.715  H31  XA4  70  
XA4  H32  H32  H  0  1  N  N  N  -4.842  48.603  -10.661   -8.651  -1.751   3.672  H32  XA4  71  
XA4  H33  H33  H  0  1  N  N  N  -3.655  48.452  -13.256   -8.942   0.769   0.990  H33  XA4  72  
XA4  H34  H34  H  0  1  N  N  N  -3.218  47.381  -11.882   -9.930  -0.620   0.477  H34  XA4  73  
XA4  H35  H35  H  0  1  N  N  N  -1.524  47.437  -13.717   -8.535   0.256  -1.391  H35  XA4  74  
XA4  H36  H36  H  0  1  N  N  N  -0.892  47.915  -12.105   -8.088  -1.414  -0.965  H36  XA4  75  
XA4  H37  H37  H  0  1  N  N  N   1.953  51.668  -13.761   -5.311   2.653  -1.896  H37  XA4  76  
XA4  H38  H38  H  0  1  N  N  N   2.472  53.211  -15.646   -3.166   3.779  -1.482  H38  XA4  77  
XA4  H22  H22  H  0  1  N  N  N   1.966  53.516  -18.456   -0.470   3.217  -0.607  H22  XA4  78  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XA4  N17  C18  DOUB  Y  N   1  
XA4  N17  N15  SING  Y  N   2  
XA4  C18  C06  SING  Y  N   3  
XA4  C16  N15  SING  N  N   4  
XA4  N15  C07  SING  Y  N   5  
XA4  C06  C07  DOUB  Y  N   6  
XA4  C06  C05  SING  N  N   7  
XA4  N19  C05  DOUB  Y  N   8  
XA4  N19  C20  SING  Y  N   9  
XA4  C21  C20  SING  N  N  10  
XA4  C07  O08  SING  N  N  11  
XA4  C05  C04  SING  Y  N  12  
XA4  C20  C22  DOUB  Y  N  13  
XA4  O08  C09  SING  N  N  14  
XA4  C04  C03  DOUB  Y  N  15  
XA4  C22  C03  SING  Y  N  16  
XA4  C09  C10  SING  N  N  17  
XA4  C03  C02  SING  N  N  18  
XA4  C10  C11  SING  N  N  19  
XA4  C02  O01  DOUB  N  N  20  
XA4  C02  N23  SING  N  N  21  
XA4  C11  C12  SING  N  N  22  
XA4  N23  C24  DOUB  N  N  23  
XA4  C12  C14  SING  N  N  24  
XA4  C12  C13  SING  N  N  25  
XA4  C14  N25  SING  N  N  26  
XA4  C24  N25  SING  N  N  27  
XA4  C24  N40  SING  N  N  28  
XA4  N25  C26  SING  N  N  29  
XA4  N40  C39  SING  N  N  30  
XA4  C26  C39  DOUB  Y  N  31  
XA4  C26  C27  SING  Y  N  32  
XA4  C39  C38  SING  Y  N  33  
XA4  C27  C28  DOUB  Y  N  34  
XA4  C38  C37  DOUB  Y  N  35  
XA4  C28  C37  SING  Y  N  36  
XA4  C28  C29  SING  N  N  37  
XA4  C29  N30  SING  N  N  38  
XA4  N30  C36  SING  N  N  39  
XA4  N30  C31  SING  N  N  40  
XA4  C36  C35  SING  N  N  41  
XA4  C31  C32  SING  N  N  42  
XA4  C35  N33  SING  N  N  43  
XA4  C32  N33  SING  N  N  44  
XA4  N33  C34  SING  N  N  45  
XA4  C18  H1   SING  N  N  46  
XA4  C16  H2   SING  N  N  47  
XA4  C16  H3   SING  N  N  48  
XA4  C16  H4   SING  N  N  49  
XA4  C14  H5   SING  N  N  50  
XA4  C14  H6   SING  N  N  51  
XA4  C13  H7   SING  N  N  52  
XA4  C13  H8   SING  N  N  53  
XA4  C13  H9   SING  N  N  54  
XA4  C12  H10  SING  N  N  55  
XA4  C10  H11  SING  N  N  56  
XA4  C10  H12  SING  N  N  57  
XA4  C11  H13  SING  N  N  58  
XA4  C11  H14  SING  N  N  59  
XA4  C21  H15  SING  N  N  60  
XA4  C21  H16  SING  N  N  61  
XA4  C21  H17  SING  N  N  62  
XA4  C22  H18  SING  N  N  63  
XA4  C27  H19  SING  N  N  64  
XA4  C29  H20  SING  N  N  65  
XA4  C29  H21  SING  N  N  66  
XA4  C31  H23  SING  N  N  67  
XA4  C31  H24  SING  N  N  68  
XA4  C04  H25  SING  N  N  69  
XA4  C09  H26  SING  N  N  70  
XA4  C09  H27  SING  N  N  71  
XA4  C32  H28  SING  N  N  72  
XA4  C32  H29  SING  N  N  73  
XA4  C34  H30  SING  N  N  74  
XA4  C34  H31  SING  N  N  75  
XA4  C34  H32  SING  N  N  76  
XA4  C35  H33  SING  N  N  77  
XA4  C35  H34  SING  N  N  78  
XA4  C36  H35  SING  N  N  79  
XA4  C36  H36  SING  N  N  80  
XA4  C37  H37  SING  N  N  81  
XA4  C38  H38  SING  N  N  82  
XA4  N40  H22  SING  N  N  83  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XA4  SMILES            ACDLabs               12.01  "c2c1c6nc(cc(C(=O)N=C5N(CC(C)CCCOc1n(C)n2)c3c(ccc(c3)CN4CCN(CC4)C)N5)c6)C"  
XA4  InChI             InChI                 1.03   "InChI=1S/C30H38N8O2/c1-20-6-5-13-40-29-24(17-31-36(29)4)26-16-23(14-21(2)32-26)28(39)34-30-33-25-8-7-22(15-27(25)38(30)18-20)19-37-11-9-35(3)10-12-37/h7-8,14-17,20H,5-6,9-13,18-19H2,1-4H3,(H,33,34,39)/t20-/m1/s1"  
XA4  InChIKey          InChI                 1.03   AIQBYZOTCIQTGW-HXUWFJFHSA-N  
XA4  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H]1CCCOc2n(C)ncc2c3cc(cc(C)n3)C(=O)N=C4Nc5ccc(CN6CCN(C)CC6)cc5N4C1"  
XA4  SMILES            CACTVS                3.385  "C[CH]1CCCOc2n(C)ncc2c3cc(cc(C)n3)C(=O)N=C4Nc5ccc(CN6CCN(C)CC6)cc5N4C1"  
XA4  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1cc2cc(n1)-c3cnn(c3OCCC[C@H](CN\4c5cc(ccc5N/C4=N\C2=O)CN6CCN(CC6)C)C)C"  
XA4  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1cc2cc(n1)-c3cnn(c3OCCCC(CN4c5cc(ccc5NC4=NC2=O)CN6CCN(CC6)C)C)C"  
#
_pdbx_chem_comp_identifier.comp_id          XA4
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "(5aE,20R)-10,15,20-trimethyl-2-[(4-methylpiperazin-1-yl)methyl]-18,19,20,21-tetrahydro-15H,17H-12,8-(metheno)pyrazolo[3',4':2,3][1,5,10,12]oxatriazacycloheptadecino[12,11-a]benzimidazol-7(5H)-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XA4  "Create component"  2020-12-07  RCSB  
XA4  "Initial release"   2022-01-19  RCSB  
##
