data_X54
#

_chem_comp.id                                   X54
_chem_comp.name                                 "1-({4-[(3-aminopropyl)amino]butyl}amino)ethane-1,1-diol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H23 N3 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-11-30
_chem_comp.pdbx_modified_date                   2021-01-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       205.298
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    X54
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7KUS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
X54  C13  C1   C  0  1  N  N  N  29.868  39.825  32.874   6.418  -0.382  -0.010  C13  X54   1  
X54  C01  C2   C  0  1  N  N  N  18.731  40.843  34.661  -5.886  -0.861   0.019  C01  X54   2  
X54  C02  C3   C  0  1  N  N  N  19.925  39.961  34.276  -4.685   0.086  -0.007  C02  X54   3  
X54  C06  C4   C  0  1  N  N  N  22.372  39.858  34.543  -2.265   0.181  -0.013  C06  X54   4  
X54  C07  C5   C  0  1  N  N  N  23.566  40.193  35.449  -0.994  -0.670   0.007  C07  X54   5  
X54  C08  C6   C  0  1  N  N  N  24.901  39.893  34.761   0.232   0.245  -0.018  C08  X54   6  
X54  C09  C7   C  0  1  N  N  N  26.121  39.819  35.690   1.504  -0.606   0.002  C09  X54   7  
X54  C11  C8   C  0  1  N  N  N  28.317  39.160  34.911   3.923  -0.512  -0.003  C11  X54   8  
X54  C12  C9   C  0  1  N  N  N  29.709  39.564  34.378   5.125   0.435  -0.030  C12  X54   9  
X54  N05  N1   N  0  1  N  N  N  21.102  40.373  35.050  -3.443  -0.698   0.011  N05  X54  10  
X54  N10  N2   N  0  1  N  N  N  27.333  40.235  34.986   2.681   0.272  -0.022  N10  X54  11  
X54  N14  N3   N  0  1  N  N  N  31.097  40.560  32.598   7.572   0.528  -0.035  N14  X54  12  
X54  O03  O1   O  0  1  N  N  N  19.574  38.637  34.552  -4.729   0.880  -1.195  O03  X54  13  
X54  O04  O2   O  0  1  N  N  N  20.104  40.103  32.908  -4.726   0.941   1.137  O04  X54  14  
X54  H1   H1   H  0  1  N  N  N  29.009  40.413  32.518   6.452  -0.986   0.896  H1   X54  15  
X54  H2   H2   H  0  1  N  N  N  29.898  38.862  32.343   6.450  -1.033  -0.883  H2   X54  16  
X54  H3   H3   H  0  1  N  N  N  18.549  40.763  35.743  -5.854  -1.512  -0.854  H3   X54  17  
X54  H4   H4   H  0  1  N  N  N  18.950  41.890  34.402  -5.852  -1.466   0.925  H4   X54  18  
X54  H5   H5   H  0  1  N  N  N  17.837  40.509  34.114  -6.808  -0.279   0.005  H5   X54  19  
X54  H6   H6   H  0  1  N  N  N  22.296  38.764  34.456  -2.280   0.833   0.860  H6   X54  20  
X54  H7   H7   H  0  1  N  N  N  22.554  40.293  33.549  -2.283   0.786  -0.919  H7   X54  21  
X54  H8   H8   H  0  1  N  N  N  23.530  41.262  35.706  -0.976  -1.276   0.913  H8   X54  22  
X54  H9   H9   H  0  1  N  N  N  23.496  39.592  36.368  -0.979  -1.322  -0.866  H9   X54  23  
X54  H10  H10  H  0  1  N  N  N  24.807  38.925  34.247   0.215   0.850  -0.924  H10  X54  24  
X54  H11  H11  H  0  1  N  N  N  25.086  40.685  34.021   0.218   0.897   0.855  H11  X54  25  
X54  H12  H12  H  0  1  N  N  N  25.959  40.482  36.552   1.521  -1.212   0.908  H12  X54  26  
X54  H13  H13  H  0  1  N  N  N  26.245  38.784  36.041   1.519  -1.258  -0.871  H13  X54  27  
X54  H14  H14  H  0  1  N  N  N  27.915  38.379  34.249   3.955  -1.163  -0.877  H14  X54  28  
X54  H15  H15  H  0  1  N  N  N  28.448  38.750  35.923   3.957  -1.117   0.903  H15  X54  29  
X54  H16  H16  H  0  1  N  N  N  30.406  38.755  34.643   5.093   1.087   0.844  H16  X54  30  
X54  H17  H17  H  0  1  N  N  N  30.002  40.486  34.901   5.091   1.040  -0.936  H17  X54  31  
X54  H18  H18  H  0  1  N  N  N  21.146  41.372  35.044  -3.417  -1.315   0.809  H18  X54  32  
X54  H20  H20  H  0  1  N  N  N  27.738  41.010  35.471   2.657   0.930   0.742  H20  X54  33  
X54  H22  H22  H  0  1  N  N  N  31.178  40.718  31.614   7.531   1.185   0.729  H22  X54  34  
X54  H23  H23  H  0  1  N  N  N  31.074  41.438  33.075   8.439   0.012  -0.023  H23  X54  35  
X54  H25  H25  H  0  1  N  N  N  19.449  38.530  35.488  -4.705   0.364  -2.013  H25  X54  36  
X54  H26  H26  H  0  1  N  N  N  20.343  41.001  32.711  -4.699   0.469   1.981  H26  X54  37  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
X54  N14  C13  SING  N  N   1  
X54  C13  C12  SING  N  N   2  
X54  O04  C02  SING  N  N   3  
X54  C02  O03  SING  N  N   4  
X54  C02  C01  SING  N  N   5  
X54  C02  N05  SING  N  N   6  
X54  C12  C11  SING  N  N   7  
X54  C06  N05  SING  N  N   8  
X54  C06  C07  SING  N  N   9  
X54  C08  C07  SING  N  N  10  
X54  C08  C09  SING  N  N  11  
X54  C11  N10  SING  N  N  12  
X54  N10  C09  SING  N  N  13  
X54  C13  H1   SING  N  N  14  
X54  C13  H2   SING  N  N  15  
X54  C01  H3   SING  N  N  16  
X54  C01  H4   SING  N  N  17  
X54  C01  H5   SING  N  N  18  
X54  C06  H6   SING  N  N  19  
X54  C06  H7   SING  N  N  20  
X54  C07  H8   SING  N  N  21  
X54  C07  H9   SING  N  N  22  
X54  C08  H10  SING  N  N  23  
X54  C08  H11  SING  N  N  24  
X54  C09  H12  SING  N  N  25  
X54  C09  H13  SING  N  N  26  
X54  C11  H14  SING  N  N  27  
X54  C11  H15  SING  N  N  28  
X54  C12  H16  SING  N  N  29  
X54  C12  H17  SING  N  N  30  
X54  N05  H18  SING  N  N  31  
X54  N10  H20  SING  N  N  32  
X54  N14  H22  SING  N  N  33  
X54  N14  H23  SING  N  N  34  
X54  O03  H25  SING  N  N  35  
X54  O04  H26  SING  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
X54  SMILES            ACDLabs               12.01  "C(CCNCCCCNC(C)(O)O)N"  
X54  InChI             InChI                 1.03   "InChI=1S/C9H23N3O2/c1-9(13,14)12-8-3-2-6-11-7-4-5-10/h11-14H,2-8,10H2,1H3"  
X54  InChIKey          InChI                 1.03   WAYWJVQKELFVTE-UHFFFAOYSA-N  
X54  SMILES_CANONICAL  CACTVS                3.385  "CC(O)(O)NCCCCNCCCN"  
X54  SMILES            CACTVS                3.385  "CC(O)(O)NCCCCNCCCN"  
X54  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(NCCCCNCCCN)(O)O"  
X54  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(NCCCCNCCCN)(O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
X54  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-({4-[(3-aminopropyl)amino]butyl}amino)ethane-1,1-diol"  
X54  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "1-[4-(3-azanylpropylamino)butylamino]ethane-1,1-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
X54  "Create component"  2020-11-30  RCSB  
X54  "Initial release"   2021-02-03  RCSB  
##
