data_VY4
#

_chem_comp.id                                   VY4
_chem_comp.name                                 "tert-butyl (3S)-3-[4-(2-aminopyrimidin-5-yl)-2-(morpholin-4-yl)-5,6-dihydro-7H-pyrrolo[2,3-d]pyrimidin-7-yl]-3-methylpyrrolidine-1-carboxylate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H34 N8 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-21
_chem_comp.pdbx_modified_date                   2021-01-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       482.579
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VY4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7K6N
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VY4  C24  C1   C  0  1  Y  N  N  -16.239   5.858  26.482  -4.677   1.723   0.230  C24  VY4   1  
VY4  C29  C2   C  0  1  Y  N  N  -14.679   7.489  25.693  -4.345   0.391  -1.740  C29  VY4   2  
VY4  C23  C3   C  0  1  Y  N  N  -15.808   7.190  26.476  -3.905   0.795  -0.476  C23  VY4   3  
VY4  C17  C4   C  0  1  Y  N  N  -17.825   8.177  27.545  -1.836   1.051   0.892  C17  VY4   4  
VY4  C22  C5   C  0  1  Y  N  N  -16.476   8.229  27.239  -2.651   0.254   0.101  C22  VY4   5  
VY4  C18  C6   C  0  1  Y  N  N  -18.366   9.248  28.301  -0.667   0.513   1.426  C18  VY4   6  
VY4  C20  C7   C  0  1  Y  N  N  -16.320  10.289  28.328  -1.167  -1.491   0.386  C20  VY4   7  
VY4  C26  C8   C  0  1  Y  N  N  -14.561   5.288  24.999  -6.174   1.771  -1.518  C26  VY4   8  
VY4  C6   C9   C  0  1  N  N  N  -21.430  12.820  31.164   4.009   0.913  -0.618  C6   VY4   9  
VY4  C16  C10  C  0  1  N  N  N  -18.886   7.195  27.216  -1.933   2.494   1.338  C16  VY4  10  
VY4  C10  C11  C  0  1  N  N  N  -22.005   9.691  29.279   1.987  -0.048   2.374  C10  VY4  11  
VY4  C15  C12  C  0  1  N  N  N  -20.157   7.808  27.855  -0.496   2.793   1.828  C15  VY4  12  
VY4  C9   C13  C  0  1  N  N  N  -22.553  10.894  30.063   3.250  -0.195   1.499  C9   VY4  13  
VY4  C31  C14  C  0  1  N  N  N  -16.008  12.315  29.731  -0.631  -3.560   1.369  C31  VY4  14  
VY4  C35  C15  C  0  1  N  N  N  -14.100  11.388  28.476  -1.821  -3.454  -0.735  C35  VY4  15  
VY4  C13  C16  C  0  1  N  N  N  -20.146  11.208  29.724   1.807   1.418   0.478  C13  VY4  16  
VY4  C32  C17  C  0  1  N  N  N  -15.406  13.713  29.495  -0.188  -4.987   1.034  C32  VY4  17  
VY4  C34  C18  C  0  1  N  N  N  -13.585  12.834  28.321  -1.367  -4.884  -1.048  C34  VY4  18  
VY4  C11  C19  C  0  1  N  N  S  -20.641  10.149  28.704   1.458   1.358   1.986  C11  VY4  19  
VY4  C12  C20  C  0  1  N  N  N  -20.818  10.804  27.331   2.193   2.453   2.763  C12  VY4  20  
VY4  C1   C21  C  0  1  N  N  N  -20.828  15.678  31.242   6.497   1.944  -1.694  C1   VY4  21  
VY4  C3   C22  C  0  1  N  N  N  -20.402  14.520  33.455   5.417   0.131  -3.031  C3   VY4  22  
VY4  C4   C23  C  0  1  N  N  N  -18.525  14.869  31.817   7.334  -0.404  -1.521  C4   VY4  23  
VY4  C2   C24  C  0  1  N  N  N  -20.032  14.606  31.978   6.090   0.469  -1.699  C2   VY4  24  
VY4  N25  N1   N  0  1  Y  N  N  -15.655   4.882  25.761  -5.790   2.178  -0.317  N25  VY4  25  
VY4  N28  N2   N  0  1  Y  N  N  -14.036   6.580  24.944  -5.467   0.897  -2.220  N28  VY4  26  
VY4  N21  N3   N  0  1  Y  N  N  -15.690   9.280  27.632  -2.287  -1.010  -0.131  N21  VY4  27  
VY4  N19  N4   N  0  1  Y  N  N  -17.662  10.327  28.708  -0.370  -0.757   1.146  N19  VY4  28  
VY4  N14  N5   N  0  1  N  N  N  -19.716   8.991  28.666   0.007   1.451   2.195  N14  VY4  29  
VY4  N30  N6   N  0  1  N  N  N  -15.572  11.438  28.621  -0.818  -2.804   0.122  N30  VY4  30  
VY4  N8   N7   N  0  1  N  N  N  -21.401  11.797  30.228   3.105   0.727   0.364  N8   VY4  31  
VY4  N27  N8   N  0  1  N  N  N  -13.941   4.337  24.237  -7.346   2.272  -2.054  N27  VY4  32  
VY4  O7   O1   O  0  1  N  N  N  -22.440  13.230  31.726   3.783   1.705  -1.511  O7   VY4  33  
VY4  O33  O2   O  0  1  N  N  N  -14.009  13.643  29.386  -1.159  -5.592   0.176  O33  VY4  34  
VY4  O5   O3   O  0  1  N  N  N  -20.187  13.341  31.354   5.163   0.219  -0.610  O5   VY4  35  
VY4  H58  H1   H  0  1  N  N  N  -17.087   5.599  27.099  -4.370   2.059   1.209  H58  VY4  36  
VY4  H61  H2   H  0  1  N  N  N  -14.310   8.504  25.694  -3.776  -0.324  -2.316  H61  VY4  37  
VY4  H57  H3   H  0  1  N  N  N  -19.003   7.093  26.127  -2.198   3.140   0.501  H57  VY4  38  
VY4  H56  H4   H  0  1  N  N  N  -18.661   6.211  27.654  -2.649   2.600   2.152  H56  VY4  39  
VY4  H47  H5   H  0  1  N  N  N  -22.692   9.419  28.464   1.255  -0.817   2.126  H47  VY4  40  
VY4  H48  H6   H  0  1  N  N  N  -21.869   8.828  29.947   2.243  -0.089   3.432  H48  VY4  41  
VY4  H55  H7   H  0  1  N  N  N  -20.857   8.129  27.070   0.103   3.226   1.027  H55  VY4  42  
VY4  H54  H8   H  0  1  N  N  N  -20.648   7.068  28.504  -0.514   3.451   2.697  H54  VY4  43  
VY4  H46  H9   H  0  1  N  N  N  -23.356  11.390  29.498   4.135   0.067   2.079  H46  VY4  44  
VY4  H45  H10  H  0  1  N  N  N  -22.937  10.574  31.043   3.332  -1.220   1.136  H45  VY4  45  
VY4  H62  H11  H  0  1  N  N  N  -17.106  12.379  29.747  -1.570  -3.590   1.921  H62  VY4  46  
VY4  H63  H12  H  0  1  N  N  N  -15.650  11.911  30.689   0.133  -3.075   1.977  H63  VY4  47  
VY4  H69  H13  H  0  1  N  N  N  -13.833  10.799  27.586  -1.926  -2.892  -1.663  H69  VY4  48  
VY4  H68  H14  H  0  1  N  N  N  -13.653  10.926  29.369  -2.780  -3.482  -0.216  H68  VY4  49  
VY4  H53  H15  H  0  1  N  N  N  -19.576  10.736  30.538   1.049   0.898  -0.108  H53  VY4  50  
VY4  H52  H16  H  0  1  N  N  N  -19.522  11.969  29.232   1.898   2.452   0.148  H52  VY4  51  
VY4  H64  H17  H  0  1  N  N  N  -15.669  14.366  30.340   0.777  -4.959   0.529  H64  VY4  52  
VY4  H65  H18  H  0  1  N  N  N  -15.820  14.131  28.565  -0.102  -5.566   1.953  H65  VY4  53  
VY4  H67  H19  H  0  1  N  N  N  -12.485  12.822  28.296  -2.134  -5.388  -1.636  H67  VY4  54  
VY4  H66  H20  H  0  1  N  N  N  -13.969  13.252  27.379  -0.435  -4.854  -1.614  H66  VY4  55  
VY4  H51  H21  H  0  1  N  N  N  -21.511  11.654  27.416   3.260   2.398   2.547  H51  VY4  56  
VY4  H49  H22  H  0  1  N  N  N  -19.843  11.161  26.967   1.811   3.429   2.463  H49  VY4  57  
VY4  H50  H23  H  0  1  N  N  N  -21.226  10.067  26.623   2.030   2.312   3.831  H50  VY4  58  
VY4  H36  H24  H  0  1  N  N  N  -20.691  16.647  31.745   7.193   2.132  -2.511  H36  VY4  59  
VY4  H38  H25  H  0  1  N  N  N  -20.472  15.750  30.204   5.611   2.566  -1.821  H38  VY4  60  
VY4  H37  H26  H  0  1  N  N  N  -21.895  15.410  31.246   6.977   2.185  -0.745  H37  VY4  61  
VY4  H40  H27  H  0  1  N  N  N  -19.802  13.735  33.939   6.113   0.319  -3.848  H40  VY4  62  
VY4  H41  H28  H  0  1  N  N  N  -20.201  15.486  33.940   5.127  -0.920  -3.034  H41  VY4  63  
VY4  H39  H29  H  0  1  N  N  N  -21.470  14.277  33.552   4.530   0.753  -3.158  H39  VY4  64  
VY4  H43  H30  H  0  1  N  N  N  -17.958  14.092  32.350   7.814  -0.163  -0.572  H43  VY4  65  
VY4  H42  H31  H  0  1  N  N  N  -18.261  14.848  30.749   7.044  -1.454  -1.525  H42  VY4  66  
VY4  H44  H32  H  0  1  N  N  N  -18.278  15.856  32.236   8.030  -0.216  -2.339  H44  VY4  67  
VY4  H60  H33  H  0  1  N  N  N  -13.176   4.751  23.744  -7.874   2.912  -1.552  H60  VY4  68  
VY4  H59  H34  H  0  1  N  N  N  -13.600   3.607  24.829  -7.640   1.983  -2.932  H59  VY4  69  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VY4  N27  C26  SING  N  N   1  
VY4  N28  C26  DOUB  Y  N   2  
VY4  N28  C29  SING  Y  N   3  
VY4  C26  N25  SING  Y  N   4  
VY4  C29  C23  DOUB  Y  N   5  
VY4  N25  C24  DOUB  Y  N   6  
VY4  C23  C24  SING  Y  N   7  
VY4  C23  C22  SING  N  N   8  
VY4  C16  C17  SING  N  N   9  
VY4  C16  C15  SING  N  N  10  
VY4  C22  C17  DOUB  Y  N  11  
VY4  C22  N21  SING  Y  N  12  
VY4  C12  C11  SING  N  N  13  
VY4  C17  C18  SING  Y  N  14  
VY4  N21  C20  DOUB  Y  N  15  
VY4  C15  N14  SING  N  N  16  
VY4  C18  N14  SING  N  N  17  
VY4  C18  N19  DOUB  Y  N  18  
VY4  C34  C35  SING  N  N  19  
VY4  C34  O33  SING  N  N  20  
VY4  C20  N30  SING  N  N  21  
VY4  C20  N19  SING  Y  N  22  
VY4  C35  N30  SING  N  N  23  
VY4  N30  C31  SING  N  N  24  
VY4  N14  C11  SING  N  N  25  
VY4  C11  C10  SING  N  N  26  
VY4  C11  C13  SING  N  N  27  
VY4  C10  C9   SING  N  N  28  
VY4  O33  C32  SING  N  N  29  
VY4  C32  C31  SING  N  N  30  
VY4  C13  N8   SING  N  N  31  
VY4  C9   N8   SING  N  N  32  
VY4  N8   C6   SING  N  N  33  
VY4  C6   O5   SING  N  N  34  
VY4  C6   O7   DOUB  N  N  35  
VY4  C1   C2   SING  N  N  36  
VY4  O5   C2   SING  N  N  37  
VY4  C4   C2   SING  N  N  38  
VY4  C2   C3   SING  N  N  39  
VY4  C24  H58  SING  N  N  40  
VY4  C29  H61  SING  N  N  41  
VY4  C16  H57  SING  N  N  42  
VY4  C16  H56  SING  N  N  43  
VY4  C10  H47  SING  N  N  44  
VY4  C10  H48  SING  N  N  45  
VY4  C15  H55  SING  N  N  46  
VY4  C15  H54  SING  N  N  47  
VY4  C9   H46  SING  N  N  48  
VY4  C9   H45  SING  N  N  49  
VY4  C31  H62  SING  N  N  50  
VY4  C31  H63  SING  N  N  51  
VY4  C35  H69  SING  N  N  52  
VY4  C35  H68  SING  N  N  53  
VY4  C13  H53  SING  N  N  54  
VY4  C13  H52  SING  N  N  55  
VY4  C32  H64  SING  N  N  56  
VY4  C32  H65  SING  N  N  57  
VY4  C34  H67  SING  N  N  58  
VY4  C34  H66  SING  N  N  59  
VY4  C12  H51  SING  N  N  60  
VY4  C12  H49  SING  N  N  61  
VY4  C12  H50  SING  N  N  62  
VY4  C1   H36  SING  N  N  63  
VY4  C1   H38  SING  N  N  64  
VY4  C1   H37  SING  N  N  65  
VY4  C3   H40  SING  N  N  66  
VY4  C3   H41  SING  N  N  67  
VY4  C3   H39  SING  N  N  68  
VY4  C4   H43  SING  N  N  69  
VY4  C4   H42  SING  N  N  70  
VY4  C4   H44  SING  N  N  71  
VY4  N27  H60  SING  N  N  72  
VY4  N27  H59  SING  N  N  73  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VY4  SMILES            ACDLabs               12.01  "c1c(cnc(n1)N)c5c2c(N(CC2)C3(CCN(C(OC(C)(C)C)=O)C3)C)nc(N4CCOCC4)n5"  
VY4  InChI             InChI                 1.03   "InChI=1S/C24H34N8O3/c1-23(2,3)35-22(33)31-8-6-24(4,15-31)32-7-5-17-18(16-13-26-20(25)27-14-16)28-21(29-19(17)32)30-9-11-34-12-10-30/h13-14H,5-12,15H2,1-4H3,(H2,25,26,27)/t24-/m0/s1"  
VY4  InChIKey          InChI                 1.03   MEWKDLGRKBRJAF-DEOSSOPVSA-N  
VY4  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(C)OC(=O)N1CC[C@@](C)(C1)N2CCc3c2nc(nc3c4cnc(N)nc4)N5CCOCC5"  
VY4  SMILES            CACTVS                3.385  "CC(C)(C)OC(=O)N1CC[C](C)(C1)N2CCc3c2nc(nc3c4cnc(N)nc4)N5CCOCC5"  
VY4  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@]1(CCN(C1)C(=O)OC(C)(C)C)N2CCc3c2nc(nc3c4cnc(nc4)N)N5CCOCC5"  
VY4  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1(CCN(C1)C(=O)OC(C)(C)C)N2CCc3c2nc(nc3c4cnc(nc4)N)N5CCOCC5"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VY4  "SYSTEMATIC NAME"  ACDLabs               12.01  "tert-butyl (3S)-3-[4-(2-aminopyrimidin-5-yl)-2-(morpholin-4-yl)-5,6-dihydro-7H-pyrrolo[2,3-d]pyrimidin-7-yl]-3-methylpyrrolidine-1-carboxylate"  
VY4  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{tert}-butyl (3~{S})-3-[4-(2-azanylpyrimidin-5-yl)-2-morpholin-4-yl-5,6-dihydropyrrolo[2,3-d]pyrimidin-7-yl]-3-methyl-pyrrolidine-1-carboxylate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VY4  "Create component"  2020-09-21  RCSB  
VY4  "Initial release"   2021-01-06  RCSB  
##
