data_VV4
#

_chem_comp.id                                   VV4
_chem_comp.name                                 "3-[(1~{R},5~{S},8~{R})-5-carboxy-2,6-diazabicyclo[3.2.1]octan-8-yl]propyl-$l^{3}-oxidanyl-bis(oxidanyl)boranuide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H20 B N2 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   -1
_chem_comp.pdbx_initial_date                    2020-09-16
_chem_comp.pdbx_modified_date                   2021-12-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       259.087
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VV4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7K4H
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VV4  C1   C1   C   0  1  N  N  S  -12.408  7.062  26.710  -2.248   0.331   0.038  C1   VV4   1  
VV4  C2   C2   C   0  1  N  N  N  -12.334  7.159  28.248  -3.282  -0.348   0.958  C2   VV4   2  
VV4  C3   C3   C   0  1  N  N  N  -13.421  6.370  28.962  -3.328  -1.841   0.626  C3   VV4   3  
VV4  O4   O1   O   0  1  N  N  N  -11.254  2.235  20.750   4.226  -1.277  -0.300  O4   VV4   4  
VV4  C7   C4   C   0  1  N  N  N  -12.114  5.300  24.678   0.273   0.457  -0.285  C7   VV4   5  
VV4  C8   C5   C   0  1  N  N  N  -12.033  3.873  24.144   1.612  -0.107   0.196  C8   VV4   6  
VV4  C9   C6   C   0  1  N  N  N  -11.533  3.811  22.702   2.756   0.641  -0.490  C9   VV4   7  
VV4  O    O2   O   0  1  N  N  N  -10.072  7.578  26.173  -3.140   2.556  -0.552  O    VV4   8  
VV4  C    C7   C   0  1  N  N  N  -11.246  7.902  26.119  -2.261   1.833   0.159  C    VV4   9  
VV4  O1   O3   O   0  1  N  N  N  -11.654  9.003  25.554  -1.479   2.387   0.895  O1   VV4  10  
VV4  C6   C8   C   0  1  N  N  R  -12.342  5.546  26.184  -0.872  -0.290   0.401  C6   VV4  11  
VV4  C5   C9   C   0  1  N  N  R  -13.737  5.182  26.733  -1.049  -1.716  -0.192  C5   VV4  12  
VV4  C4   C10  C   0  1  N  N  N  -14.715  6.278  26.162  -1.804  -1.436  -1.513  C4   VV4  13  
VV4  N1   N1   N   0  1  N  N  N  -13.800  7.479  26.175  -2.521  -0.137  -1.342  N1   VV4  14  
VV4  N    N2   N   0  1  N  N  N  -13.704  5.082  28.236  -1.984  -2.428   0.705  N    VV4  15  
VV4  B    B1   B  -1  1  N  N  N  -11.962  2.472  22.007   4.153   0.052   0.012  B    VV4  16  
VV4  O3   O4   O   0  1  N  N  N  -13.391  2.451  21.638   4.254   0.208   1.366  O3   VV4  17  
VV4  O2   O5   O   0  1  N  N  N  -11.699  1.265  22.822   5.176   0.720  -0.602  O2   VV4  18  
VV4  H1   H1   H   0  1  N  N  N  -11.356  6.776  28.574  -2.988  -0.214   1.999  H1   VV4  19  
VV4  H2   H2   H   0  1  N  N  N  -12.427  8.217  28.534  -4.264   0.094   0.793  H2   VV4  20  
VV4  H3   H3   H   0  1  N  N  N  -14.340  6.973  29.000  -3.984  -2.347   1.334  H3   VV4  21  
VV4  H4   H4   H   0  1  N  N  N  -13.089  6.143  29.986  -3.718  -1.973  -0.383  H4   VV4  22  
VV4  H5   H5   H   0  1  N  N  N  -10.317  2.234  20.909   5.050  -1.701  -0.024  H5   VV4  23  
VV4  H6   H6   H   0  1  N  N  N  -11.166  5.792  24.415   0.215   1.517  -0.037  H6   VV4  24  
VV4  H7   H7   H   0  1  N  N  N  -12.942  5.792  24.147   0.193   0.333  -1.365  H7   VV4  25  
VV4  H8   H8   H   0  1  N  N  N  -13.036  3.423  24.188   1.691   0.018   1.276  H8   VV4  26  
VV4  H9   H9   H   0  1  N  N  N  -11.344  3.298  24.780   1.669  -1.167  -0.053  H9   VV4  27  
VV4  H10  H10  H   0  1  N  N  N  -10.435  3.880  22.700   2.676   0.516  -1.570  H10  VV4  28  
VV4  H11  H11  H   0  1  N  N  N  -11.954  4.657  22.140   2.699   1.701  -0.242  H11  VV4  29  
VV4  H12  H12  H   0  1  N  N  N   -9.540  8.242  25.750  -3.110   3.516  -0.442  H12  VV4  30  
VV4  H13  H13  H   0  1  N  N  N  -11.574  5.010  26.760  -0.726  -0.326   1.481  H13  VV4  31  
VV4  H14  H14  H   0  1  N  N  N  -14.034  4.208  26.316  -0.105  -2.244  -0.328  H14  VV4  32  
VV4  H15  H15  H   0  1  N  N  N  -15.589  6.424  26.813  -1.096  -1.366  -2.339  H15  VV4  33  
VV4  H16  H16  H   0  1  N  N  N  -15.053  6.033  25.144  -2.521  -2.235  -1.704  H16  VV4  34  
VV4  H17  H17  H   0  1  N  N  N  -13.706  7.837  25.246  -2.215   0.538  -2.028  H17  VV4  35  
VV4  H19  H19  H   0  1  N  N  N  -14.594  4.744  28.542  -2.007  -3.414   0.494  H19  VV4  36  
VV4  H21  H21  H   0  1  N  N  N  -13.921  2.600  22.412   3.559  -0.240   1.866  H21  VV4  37  
VV4  H22  H22  H   0  1  N  N  N  -12.133  1.349  23.663   5.168   0.652  -1.566  H22  VV4  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VV4  O4  B    SING  N  N   1  
VV4  O3  B    SING  N  N   2  
VV4  B   C9   SING  N  N   3  
VV4  B   O2   SING  N  N   4  
VV4  C9  C8   SING  N  N   5  
VV4  C8  C7   SING  N  N   6  
VV4  C7  C6   SING  N  N   7  
VV4  O1  C    DOUB  N  N   8  
VV4  C   O    SING  N  N   9  
VV4  C   C1   SING  N  N  10  
VV4  C4  N1   SING  N  N  11  
VV4  C4  C5   SING  N  N  12  
VV4  N1  C1   SING  N  N  13  
VV4  C6  C1   SING  N  N  14  
VV4  C6  C5   SING  N  N  15  
VV4  C1  C2   SING  N  N  16  
VV4  C5  N    SING  N  N  17  
VV4  N   C3   SING  N  N  18  
VV4  C2  C3   SING  N  N  19  
VV4  C2  H1   SING  N  N  20  
VV4  C2  H2   SING  N  N  21  
VV4  C3  H3   SING  N  N  22  
VV4  C3  H4   SING  N  N  23  
VV4  O4  H5   SING  N  N  24  
VV4  C7  H6   SING  N  N  25  
VV4  C7  H7   SING  N  N  26  
VV4  C8  H8   SING  N  N  27  
VV4  C8  H9   SING  N  N  28  
VV4  C9  H10  SING  N  N  29  
VV4  C9  H11  SING  N  N  30  
VV4  O   H12  SING  N  N  31  
VV4  C6  H13  SING  N  N  32  
VV4  C5  H14  SING  N  N  33  
VV4  C4  H15  SING  N  N  34  
VV4  C4  H16  SING  N  N  35  
VV4  N1  H17  SING  N  N  36  
VV4  N   H19  SING  N  N  37  
VV4  O3  H21  SING  N  N  38  
VV4  O2  H22  SING  N  N  39  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VV4  SMILES            ACDLabs               12.01  "O[B-](O)(O)CCCC1C2NCCC1(NC2)C(=O)O"  
VV4  InChI             InChI                 1.03   "InChI=1S/C10H20BN2O5/c14-9(15)10-3-5-12-8(6-13-10)7(10)2-1-4-11(16,17)18/h7-8,12-13,16-18H,1-6H2,(H,14,15)/q-1/t7-,8+,10+/m1/s1"  
VV4  InChIKey          InChI                 1.03   LAVGLMPTAZJTQK-WEDXCCLWSA-N  
VV4  SMILES_CANONICAL  CACTVS                3.385  "OC(=O)[C@@]12CCN[C@@H](CN1)[C@H]2CCC[B-](O)(O)O"  
VV4  SMILES            CACTVS                3.385  "OC(=O)[C]12CCN[CH](CN1)[CH]2CCC[B-](O)(O)O"  
VV4  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "[B-](CCC[C@@H]1[C@@H]2CN[C@]1(CCN2)C(=O)O)(O)(O)O"  
VV4  SMILES            "OpenEye OEToolkits"  2.0.7  "[B-](CCCC1C2CNC1(CCN2)C(=O)O)(O)(O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VV4  "SYSTEMATIC NAME"  ACDLabs               12.01  "{3-[(1R,5S,8R)-5-carboxy-2,6-diazabicyclo[3.2.1]octan-8-yl]propyl}(trihydroxido)borate(1-)"  
VV4  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "3-[(1~{R},5~{S},8~{R})-5-carboxy-2,6-diazabicyclo[3.2.1]octan-8-yl]propyl-tris(oxidanyl)boranuide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VV4  "Create component"  2020-09-16  RCSB  
VV4  "Initial release"   2021-12-01  RCSB  
VV4  "Modify charge"     2021-12-01  RCSB  
##
