data_VK4
#

_chem_comp.id                                   VK4
_chem_comp.name                                 "(4R)-6-[(2,5-dichloro-3-{[(2R,4R)-1-(cyclopentanecarbonyl)-2-methylpiperidin-4-yl]oxy}phenyl)amino]-6-oxo-4-phenylhexanoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C30 H36 Cl2 N2 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-08-19
_chem_comp.pdbx_modified_date                   2021-01-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       575.523
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VK4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JTW
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VK4  C1   C1   C   0  1  Y  N  N  -28.833   -3.604  -23.690   -1.132  -0.251   0.816  C1   VK4   1  
VK4  C10  C2   C   0  1  N  N  N  -26.840   -7.457  -24.103    4.294   1.984  -0.343  C10  VK4   2  
VK4  C11  C3   C   0  1  N  N  R  -26.344   -8.252  -25.297    5.562   1.608  -1.116  C11  VK4   3  
VK4  C13  C4   C   0  1  N  N  N  -27.551  -10.206  -24.902    5.519  -0.675  -0.030  C13  VK4   4  
VK4  C14  C5   C   0  1  N  N  N  -28.429   -9.340  -24.018    4.250  -0.274   0.731  C14  VK4   5  
VK4  C15  C6   C   0  1  N  N  N  -25.225  -10.262  -24.260    7.560   0.677  -0.051  C15  VK4   6  
VK4  C17  C7   C   0  1  N  N  N  -25.451  -11.742  -24.145    8.298  -0.474   0.584  C17  VK4   7  
VK4  C18  C8   C   0  1  N  N  N  -24.894  -12.349  -25.404    8.412  -1.658  -0.407  C18  VK4   8  
VK4  C19  C9   C   0  1  N  N  N  -23.956  -13.453  -25.006    9.642  -2.433   0.126  C19  VK4   9  
VK4  C2   C10  C   0  1  Y  N  N  -28.818   -3.274  -22.349   -0.992  -1.432   0.099  C2   VK4  10  
VK4  C20  C11  C   0  1  N  N  N  -23.582  -13.211  -23.572   10.616  -1.327   0.584  C20  VK4  11  
VK4  C21  C12  C   0  1  N  N  N  -24.605  -12.256  -23.003    9.761  -0.082   0.875  C21  VK4  12  
VK4  C22  C13  C   0  1  N  N  N  -25.261   -7.622  -26.133    6.472   2.832  -1.233  C22  VK4  13  
VK4  C25  C14  C   0  1  N  N  N  -27.653   -1.769  -24.833   -3.510  -0.240   0.726  C25  VK4  14  
VK4  C27  C15  C   0  1  N  N  N  -27.616   -1.110  -26.188   -4.844   0.016   1.378  C27  VK4  15  
VK4  C28  C16  C   0  1  N  N  R  -27.172   -2.070  -27.314   -5.964  -0.447   0.444  C28  VK4  16  
VK4  C29  C17  C   0  1  N  N  N  -27.190   -1.311  -28.657   -7.312  -0.303   1.155  C29  VK4  17  
VK4  C3   C18  C   0  1  Y  N  N  -28.949   -4.274  -21.397    0.232  -1.767  -0.451  C3   VK4  18  
VK4  C30  C19  C   0  1  N  N  N  -26.730   -2.233  -29.780   -8.419  -0.882   0.270  C30  VK4  19  
VK4  C31  C20  C   0  1  N  N  N  -26.935   -1.437  -31.071   -9.746  -0.740   0.970  C31  VK4  20  
VK4  C34  C21  C   0  1  Y  N  N  -25.800   -2.544  -26.960   -5.961   0.398  -0.803  C34  VK4  21  
VK4  C35  C22  C   0  1  Y  N  N  -24.713   -1.718  -27.102   -6.141   1.766  -0.711  C35  VK4  22  
VK4  C36  C23  C   0  1  Y  N  N  -23.450   -2.141  -26.755   -6.137   2.542  -1.856  C36  VK4  23  
VK4  C37  C24  C   0  1  Y  N  N  -23.266   -3.415  -26.257   -5.954   1.949  -3.091  C37  VK4  24  
VK4  C38  C25  C   0  1  Y  N  N  -24.348   -4.245  -26.114   -5.774   0.582  -3.183  C38  VK4  25  
VK4  C39  C26  C   0  1  Y  N  N  -25.607   -3.815  -26.456   -5.773  -0.193  -2.038  C39  VK4  26  
VK4  C4   C27  C   0  1  Y  N  N  -29.086   -5.595  -21.756    1.319  -0.927  -0.289  C4   VK4  27  
VK4  C5   C28  C   0  1  Y  N  N  -29.098   -5.908  -23.100    1.184   0.255   0.426  C5   VK4  28  
VK4  C6   C29  C   0  1  Y  N  N  -28.987   -4.920  -24.055   -0.042   0.594   0.979  C6   VK4  29  
VK4  C9   C30  C   0  1  N  N  R  -28.294   -7.839  -24.274    3.452   0.727  -0.108  C9   VK4  30  
VK4  N12  N1   N   0  1  N  N  N  -26.235   -9.662  -24.984    6.262   0.542  -0.386  N12  VK4  31  
VK4  N24  N2   N   0  1  N  N  N  -28.722   -2.635  -24.720   -2.372   0.091   1.369  N24  VK4  32  
VK4  O16  O1   O   0  1  N  N  N  -24.254   -9.717  -23.749    8.135   1.724  -0.261  O16  VK4  33  
VK4  O26  O2   O   0  1  N  N  N  -26.847   -1.503  -23.940   -3.459  -0.743  -0.376  O26  VK4  34  
VK4  O32  O3   O   0  1  N  N  N  -26.042   -0.595  -31.339  -10.867  -1.181   0.378  O32  VK4  35  
VK4  O33  O4   O   0  1  N  N  N  -27.951   -1.736  -31.753   -9.801  -0.228   2.063  O33  VK4  36  
VK4  O8   O5   O   0  1  N  N  N  -29.262   -7.242  -23.407    2.253   1.080   0.584  O8   VK4  37  
VK4  CL2  CL1  CL  0  0  N  N  N  -28.965   -3.852  -19.713    0.405  -3.244  -1.345  CL2  VK4  38  
VK4  CL7  CL2  CL  0  0  N  N  N  -29.025   -5.271  -25.751   -0.213   2.071   1.875  CL7  VK4  39  
VK4  H1   H1   H   0  1  N  N  N  -26.415   -7.806  -23.150    4.569   2.422   0.617  H1   VK4  40  
VK4  H2   H2   H   0  1  N  N  N  -26.667   -6.376  -24.207    3.716   2.706  -0.920  H2   VK4  41  
VK4  H3   H3   H   0  1  N  N  N  -27.211   -8.219  -25.974    5.292   1.254  -2.111  H3   VK4  42  
VK4  H4   H4   H   0  1  N  N  N  -27.987  -10.253  -25.911    6.139  -1.310   0.603  H4   VK4  43  
VK4  H5   H5   H   0  1  N  N  N  -27.498  -11.220  -24.478    5.246  -1.217  -0.935  H5   VK4  44  
VK4  H6   H6   H   0  1  N  N  N  -29.478   -9.626  -24.188    3.642  -1.159   0.917  H6   VK4  45  
VK4  H7   H7   H   0  1  N  N  N  -28.162   -9.536  -22.969    4.525   0.185   1.681  H7   VK4  46  
VK4  H8   H8   H   0  1  N  N  N  -26.515  -11.986  -24.008    7.797  -0.787   1.500  H8   VK4  47  
VK4  H9   H9   H   0  1  N  N  N  -24.350  -11.585  -25.979    7.517  -2.281  -0.370  H9   VK4  48  
VK4  H10  H10  H   0  1  N  N  N  -25.712  -12.756  -26.017    8.591  -1.298  -1.420  H10  VK4  49  
VK4  H11  H11  H   0  1  N  N  N  -24.455  -14.428  -25.108    9.360  -3.065   0.968  H11  VK4  50  
VK4  H12  H12  H   0  1  N  N  N  -23.057  -13.433  -25.640   10.090  -3.031  -0.668  H12  VK4  51  
VK4  H13  H13  H   0  1  N  N  N  -28.705   -2.244  -22.044   -1.839  -2.090  -0.029  H13  VK4  52  
VK4  H14  H14  H   0  1  N  N  N  -23.597  -14.158  -23.013   11.139  -1.641   1.487  H14  VK4  53  
VK4  H15  H15  H   0  1  N  N  N  -22.577  -12.767  -23.514   11.334  -1.111  -0.207  H15  VK4  54  
VK4  H16  H16  H   0  1  N  N  N  -24.096  -11.416  -22.508   10.064   0.739   0.225  H16  VK4  55  
VK4  H17  H17  H   0  1  N  N  N  -25.241  -12.781  -22.274    9.869   0.209   1.920  H17  VK4  56  
VK4  H18  H18  H   0  1  N  N  N  -25.486   -6.556  -26.282    7.340   2.582  -1.844  H18  VK4  57  
VK4  H19  H19  H   0  1  N  N  N  -24.294   -7.724  -25.618    5.923   3.650  -1.699  H19  VK4  58  
VK4  H20  H20  H   0  1  N  N  N  -25.212   -8.126  -27.109    6.803   3.135  -0.240  H20  VK4  59  
VK4  H21  H21  H   0  1  N  N  N  -26.911   -0.266  -26.148   -4.902  -0.535   2.316  H21  VK4  60  
VK4  H22  H22  H   0  1  N  N  N  -28.623   -0.736  -26.423   -4.953   1.082   1.575  H22  VK4  61  
VK4  H23  H23  H   0  1  N  N  N  -27.866   -2.922  -27.364   -5.805  -1.492   0.176  H23  VK4  62  
VK4  H24  H24  H   0  1  N  N  N  -26.514   -0.445  -28.596   -7.284  -0.843   2.101  H24  VK4  63  
VK4  H25  H25  H   0  1  N  N  N  -28.213   -0.964  -28.866   -7.512   0.751   1.344  H25  VK4  64  
VK4  H26  H26  H   0  1  N  N  N  -27.334   -3.152  -29.795   -8.447  -0.342  -0.676  H26  VK4  65  
VK4  H27  H27  H   0  1  N  N  N  -25.669   -2.494  -29.653   -8.219  -1.936   0.081  H27  VK4  66  
VK4  H28  H28  H   0  1  N  N  N  -24.851   -0.720  -27.492   -6.284   2.228   0.254  H28  VK4  67  
VK4  H29  H29  H   0  1  N  N  N  -22.606   -1.478  -26.872   -6.278   3.610  -1.784  H29  VK4  68  
VK4  H30  H30  H   0  1  N  N  N  -22.278   -3.755  -25.982   -5.952   2.555  -3.985  H30  VK4  69  
VK4  H31  H31  H   0  1  N  N  N  -24.209   -5.245  -25.729   -5.631   0.120  -4.148  H31  VK4  70  
VK4  H32  H32  H   0  1  N  N  N  -26.452   -4.476  -26.330   -5.628  -1.261  -2.109  H32  VK4  71  
VK4  H33  H33  H   0  1  N  N  N  -29.182   -6.366  -21.006    2.273  -1.191  -0.719  H33  VK4  72  
VK4  H34  H34  H   0  1  N  N  N  -28.577   -7.647  -25.319    3.198   0.276  -1.067  H34  VK4  73  
VK4  H35  H35  H   0  1  N  N  N  -29.455   -2.576  -25.398   -2.412   0.565   2.214  H35  VK4  74  
VK4  H36  H36  H   0  1  N  N  N  -26.235   -0.182  -32.172  -11.694  -1.068   0.866  H36  VK4  75  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VK4  O33  C31  DOUB  N  N   1  
VK4  O32  C31  SING  N  N   2  
VK4  C31  C30  SING  N  N   3  
VK4  C30  C29  SING  N  N   4  
VK4  C29  C28  SING  N  N   5  
VK4  C28  C34  SING  N  N   6  
VK4  C28  C27  SING  N  N   7  
VK4  C35  C34  DOUB  Y  N   8  
VK4  C35  C36  SING  Y  N   9  
VK4  C34  C39  SING  Y  N  10  
VK4  C36  C37  DOUB  Y  N  11  
VK4  C39  C38  DOUB  Y  N  12  
VK4  C37  C38  SING  Y  N  13  
VK4  C27  C25  SING  N  N  14  
VK4  C22  C11  SING  N  N  15  
VK4  CL7  C6   SING  N  N  16  
VK4  C18  C19  SING  N  N  17  
VK4  C18  C17  SING  N  N  18  
VK4  C11  N12  SING  N  N  19  
VK4  C11  C10  SING  N  N  20  
VK4  C19  C20  SING  N  N  21  
VK4  N12  C13  SING  N  N  22  
VK4  N12  C15  SING  N  N  23  
VK4  C13  C14  SING  N  N  24  
VK4  C25  N24  SING  N  N  25  
VK4  C25  O26  DOUB  N  N  26  
VK4  N24  C1   SING  N  N  27  
VK4  C9   C10  SING  N  N  28  
VK4  C9   C14  SING  N  N  29  
VK4  C9   O8   SING  N  N  30  
VK4  C15  C17  SING  N  N  31  
VK4  C15  O16  DOUB  N  N  32  
VK4  C17  C21  SING  N  N  33  
VK4  C6   C1   DOUB  Y  N  34  
VK4  C6   C5   SING  Y  N  35  
VK4  C1   C2   SING  Y  N  36  
VK4  C20  C21  SING  N  N  37  
VK4  O8   C5   SING  N  N  38  
VK4  C5   C4   DOUB  Y  N  39  
VK4  C2   C3   DOUB  Y  N  40  
VK4  C4   C3   SING  Y  N  41  
VK4  C3   CL2  SING  N  N  42  
VK4  C10  H1   SING  N  N  43  
VK4  C10  H2   SING  N  N  44  
VK4  C11  H3   SING  N  N  45  
VK4  C13  H4   SING  N  N  46  
VK4  C13  H5   SING  N  N  47  
VK4  C14  H6   SING  N  N  48  
VK4  C14  H7   SING  N  N  49  
VK4  C17  H8   SING  N  N  50  
VK4  C18  H9   SING  N  N  51  
VK4  C18  H10  SING  N  N  52  
VK4  C19  H11  SING  N  N  53  
VK4  C19  H12  SING  N  N  54  
VK4  C2   H13  SING  N  N  55  
VK4  C20  H14  SING  N  N  56  
VK4  C20  H15  SING  N  N  57  
VK4  C21  H16  SING  N  N  58  
VK4  C21  H17  SING  N  N  59  
VK4  C22  H18  SING  N  N  60  
VK4  C22  H19  SING  N  N  61  
VK4  C22  H20  SING  N  N  62  
VK4  C27  H21  SING  N  N  63  
VK4  C27  H22  SING  N  N  64  
VK4  C28  H23  SING  N  N  65  
VK4  C29  H24  SING  N  N  66  
VK4  C29  H25  SING  N  N  67  
VK4  C30  H26  SING  N  N  68  
VK4  C30  H27  SING  N  N  69  
VK4  C35  H28  SING  N  N  70  
VK4  C36  H29  SING  N  N  71  
VK4  C37  H30  SING  N  N  72  
VK4  C38  H31  SING  N  N  73  
VK4  C39  H32  SING  N  N  74  
VK4  C4   H33  SING  N  N  75  
VK4  C9   H34  SING  N  N  76  
VK4  N24  H35  SING  N  N  77  
VK4  O32  H36  SING  N  N  78  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VK4  SMILES            ACDLabs               12.01  "c1(cc(Cl)cc(c1Cl)OC2CC(N(CC2)C(C3CCCC3)=O)C)NC(=O)CC(c4ccccc4)CCC(O)=O"  
VK4  InChI             InChI                 1.03   "InChI=1S/C30H36Cl2N2O5/c1-19-15-24(13-14-34(19)30(38)21-9-5-6-10-21)39-26-18-23(31)17-25(29(26)32)33-27(35)16-22(11-12-28(36)37)20-7-3-2-4-8-20/h2-4,7-8,17-19,21-22,24H,5-6,9-16H2,1H3,(H,33,35)(H,36,37)/t19-,22-,24-/m1/s1"  
VK4  InChIKey          InChI                 1.03   NWXXXIQTJWEGQR-ZFJSRUIDSA-N  
VK4  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H]1C[C@@H](CCN1C(=O)C2CCCC2)Oc3cc(Cl)cc(NC(=O)C[C@@H](CCC(O)=O)c4ccccc4)c3Cl"  
VK4  SMILES            CACTVS                3.385  "C[CH]1C[CH](CCN1C(=O)C2CCCC2)Oc3cc(Cl)cc(NC(=O)C[CH](CCC(O)=O)c4ccccc4)c3Cl"  
VK4  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H]1C[C@@H](CCN1C(=O)C2CCCC2)Oc3cc(cc(c3Cl)NC(=O)C[C@@H](CCC(=O)O)c4ccccc4)Cl"  
VK4  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1CC(CCN1C(=O)C2CCCC2)Oc3cc(cc(c3Cl)NC(=O)CC(CCC(=O)O)c4ccccc4)Cl"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VK4  "SYSTEMATIC NAME"  ACDLabs               12.01  "(4R)-6-[(2,5-dichloro-3-{[(2R,4R)-1-(cyclopentanecarbonyl)-2-methylpiperidin-4-yl]oxy}phenyl)amino]-6-oxo-4-phenylhexanoic acid"  
VK4  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(4~{R})-6-[[2,5-bis(chloranyl)-3-[(2~{R},4~{R})-1-cyclopentylcarbonyl-2-methyl-piperidin-4-yl]oxy-phenyl]amino]-6-oxidanylidene-4-phenyl-hexanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VK4  "Create component"  2020-08-19  RCSB  
VK4  "Initial release"   2021-02-03  RCSB  
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