data_V54
#

_chem_comp.id                                   V54
_chem_comp.name                                 "7-{[3-({[(6-aminopyridin-2-yl)methyl]amino}methyl)phenoxy]methyl}quinolin-2-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H23 N5 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-06-26
_chem_comp.pdbx_modified_date                   2021-06-25
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       385.462
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V54
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6XK8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V54  C02  C1   C  0  1  Y  N  N   4.461   6.534  22.233  -6.680   2.567  -0.044  C02  V54   1  
V54  C03  C2   C  0  1  Y  N  N   4.296   5.368  21.444  -7.781   2.103  -0.756  C03  V54   2  
V54  C04  C3   C  0  1  Y  N  N   5.407   4.865  20.780  -8.075   0.751  -0.734  C04  V54   3  
V54  C05  C4   C  0  1  Y  N  N   6.665   5.506  20.891  -7.255  -0.094   0.002  C05  V54   4  
V54  C06  C5   C  0  1  Y  N  N   6.733   6.657  21.677  -6.179   0.436   0.686  C06  V54   5  
V54  C07  C6   C  0  1  N  N  N   7.984   7.399  21.884  -5.284  -0.476   1.486  C07  V54   6  
V54  C09  C7   C  0  1  N  N  N   8.759   9.163  23.448  -3.233  -1.760   1.418  C09  V54   7  
V54  C10  C8   C  0  1  Y  N  N   8.686  10.426  22.644  -2.061  -2.140   0.550  C10  V54   8  
V54  C11  C9   C  0  1  Y  N  N   9.664  10.693  21.666  -2.134  -3.261  -0.256  C11  V54   9  
V54  C12  C10  C  0  1  Y  N  N   9.604  11.876  20.924  -1.063  -3.610  -1.058  C12  V54  10  
V54  C13  C11  C  0  1  Y  N  N   8.585  12.819  21.132   0.083  -2.839  -1.056  C13  V54  11  
V54  C14  C12  C  0  1  Y  N  N   7.598  12.572  22.106   0.159  -1.713  -0.248  C14  V54  12  
V54  C16  C13  C  0  1  N  N  N   6.517  14.669  21.538   2.353  -1.370  -1.097  C16  V54  13  
V54  C17  C14  C  0  1  Y  N  N   5.431  15.663  21.988   3.509  -0.413  -0.961  C17  V54  14  
V54  C18  C15  C  0  1  Y  N  N   4.945  16.703  21.145   3.578   0.701  -1.794  C18  V54  15  
V54  C19  C16  C  0  1  Y  N  N   3.966  17.582  21.570   4.610   1.584  -1.695  C19  V54  16  
V54  C20  C17  C  0  1  Y  N  N   3.395  17.482  22.868   5.617   1.371  -0.741  C20  V54  17  
V54  C21  C18  C  0  1  Y  N  N   2.393  18.372  23.344   6.700   2.263  -0.608  C21  V54  18  
V54  C22  C19  C  0  1  Y  N  N   1.901  18.220  24.611   7.643   1.998   0.338  C22  V54  19  
V54  C23  C20  C  0  1  Y  N  N   2.410  17.146  25.422   7.519   0.860   1.148  C23  V54  20  
V54  C26  C21  C  0  1  Y  N  N   3.842  16.458  23.718   5.548   0.239   0.108  C26  V54  21  
V54  C27  C22  C  0  1  Y  N  N   4.867  15.568  23.250   4.465  -0.647  -0.021  C27  V54  22  
V54  C28  C23  C  0  1  Y  N  N   7.672  11.375  22.852  -0.917  -1.365   0.555  C28  V54  23  
V54  N01  N1   N  0  1  N  N  N   3.367   7.059  22.910  -6.377   3.924  -0.052  N01  V54  24  
V54  N08  N2   N  0  1  N  N  N   7.748   8.204  23.101  -4.128  -0.869   0.669  N08  V54  25  
V54  N24  N3   N  0  1  N  N  N   1.917  16.996  26.709   8.488   0.603   2.107  N24  V54  26  
V54  N25  N4   N  0  1  Y  N  N   3.355  16.284  25.000   6.505   0.030   1.020  N25  V54  27  
V54  N29  N5   N  0  1  Y  N  N   5.675   7.182  22.351  -5.922   1.729   0.647  N29  V54  28  
V54  O15  O1   O  0  1  N  N  N   6.602  13.477  22.334   1.285  -0.952  -0.245  O15  V54  29  
V54  H1   H1   H  0  1  N  N  N   3.334   4.885  21.362  -8.399   2.788  -1.318  H1   V54  30  
V54  H2   H2   H  0  1  N  N  N   5.311   3.977  20.173  -8.924   0.362  -1.277  H2   V54  31  
V54  H3   H3   H  0  1  N  N  N   7.538   5.119  20.387  -7.457  -1.154   0.040  H3   V54  32  
V54  H4   H4   H  0  1  N  N  N   8.825   6.706  22.035  -4.938   0.046   2.378  H4   V54  33  
V54  H5   H5   H  0  1  N  N  N   8.195   8.051  21.023  -5.841  -1.366   1.778  H5   V54  34  
V54  H6   H6   H  0  1  N  N  N   9.745   8.703  23.286  -3.775  -2.659   1.710  H6   V54  35  
V54  H7   H7   H  0  1  N  N  N   8.645   9.420  24.511  -2.872  -1.247   2.310  H7   V54  36  
V54  H8   H8   H  0  1  N  N  N  10.460   9.984  21.490  -3.029  -3.866  -0.258  H8   V54  37  
V54  H9   H9   H  0  1  N  N  N  10.358  12.069  20.175  -1.122  -4.486  -1.686  H9   V54  38  
V54  H10  H10  H  0  1  N  N  N   8.558  13.728  20.549   0.920  -3.112  -1.682  H10  V54  39  
V54  H11  H11  H  0  1  N  N  N   6.304  14.374  20.500   2.009  -1.380  -2.132  H11  V54  40  
V54  H12  H12  H  0  1  N  N  N   7.490  15.181  21.581   2.675  -2.372  -0.812  H12  V54  41  
V54  H13  H13  H  0  1  N  N  N   5.351  16.808  20.150   2.803   0.867  -2.528  H13  V54  42  
V54  H14  H14  H  0  1  N  N  N   3.628  18.361  20.902   4.653   2.444  -2.347  H14  V54  43  
V54  H15  H15  H  0  1  N  N  N   2.023  19.163  22.709   6.780   3.135  -1.241  H15  V54  44  
V54  H16  H16  H  0  1  N  N  N   1.147  18.891  24.994   8.486   2.662   0.464  H16  V54  45  
V54  H17  H17  H  0  1  N  N  N   5.214  14.789  23.912   4.395  -1.514   0.620  H17  V54  46  
V54  H18  H18  H  0  1  N  N  N   6.924  11.183  23.607  -0.863  -0.487   1.181  H18  V54  47  
V54  H19  H19  H  0  1  N  N  N   3.646   7.878  23.411  -5.613   4.253   0.446  H19  V54  48  
V54  H20  H20  H  0  1  N  N  N   2.652   7.297  22.253  -6.930   4.541  -0.556  H20  V54  49  
V54  H21  H21  H  0  1  N  N  N   6.890   8.701  22.973  -4.425  -1.297  -0.195  H21  V54  50  
V54  H23  H23  H  0  1  N  N  N   2.369  16.221  27.151   9.240   1.207   2.211  H23  V54  51  
V54  H24  H24  H  0  1  N  N  N   2.094  17.829  27.233   8.413  -0.181   2.674  H24  V54  52  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V54  C04  C05  DOUB  Y  N   1  
V54  C04  C03  SING  Y  N   2  
V54  C05  C06  SING  Y  N   3  
V54  C12  C13  DOUB  Y  N   4  
V54  C12  C11  SING  Y  N   5  
V54  C13  C14  SING  Y  N   6  
V54  C18  C19  DOUB  Y  N   7  
V54  C18  C17  SING  Y  N   8  
V54  C03  C02  DOUB  Y  N   9  
V54  C16  C17  SING  N  N  10  
V54  C16  O15  SING  N  N  11  
V54  C19  C20  SING  Y  N  12  
V54  C11  C10  DOUB  Y  N  13  
V54  C06  C07  SING  N  N  14  
V54  C06  N29  DOUB  Y  N  15  
V54  C07  N08  SING  N  N  16  
V54  C17  C27  DOUB  Y  N  17  
V54  C14  O15  SING  N  N  18  
V54  C14  C28  DOUB  Y  N  19  
V54  C02  N29  SING  Y  N  20  
V54  C02  N01  SING  N  N  21  
V54  C10  C28  SING  Y  N  22  
V54  C10  C09  SING  N  N  23  
V54  C20  C21  DOUB  Y  N  24  
V54  C20  C26  SING  Y  N  25  
V54  N08  C09  SING  N  N  26  
V54  C27  C26  SING  Y  N  27  
V54  C21  C22  SING  Y  N  28  
V54  C26  N25  DOUB  Y  N  29  
V54  C22  C23  DOUB  Y  N  30  
V54  N25  C23  SING  Y  N  31  
V54  C23  N24  SING  N  N  32  
V54  C03  H1   SING  N  N  33  
V54  C04  H2   SING  N  N  34  
V54  C05  H3   SING  N  N  35  
V54  C07  H4   SING  N  N  36  
V54  C07  H5   SING  N  N  37  
V54  C09  H6   SING  N  N  38  
V54  C09  H7   SING  N  N  39  
V54  C11  H8   SING  N  N  40  
V54  C12  H9   SING  N  N  41  
V54  C13  H10  SING  N  N  42  
V54  C16  H11  SING  N  N  43  
V54  C16  H12  SING  N  N  44  
V54  C18  H13  SING  N  N  45  
V54  C19  H14  SING  N  N  46  
V54  C21  H15  SING  N  N  47  
V54  C22  H16  SING  N  N  48  
V54  C27  H17  SING  N  N  49  
V54  C28  H18  SING  N  N  50  
V54  N01  H19  SING  N  N  51  
V54  N01  H20  SING  N  N  52  
V54  N08  H21  SING  N  N  53  
V54  N24  H23  SING  N  N  54  
V54  N24  H24  SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V54  SMILES            ACDLabs               12.01  "c1(nc(ccc1)CNCc2cc(ccc2)OCc3cc4c(cc3)ccc(N)n4)N"  
V54  InChI             InChI                 1.03   "InChI=1S/C23H23N5O/c24-22-6-2-4-19(27-22)14-26-13-16-3-1-5-20(11-16)29-15-17-7-8-18-9-10-23(25)28-21(18)12-17/h1-12,26H,13-15H2,(H2,24,27)(H2,25,28)"  
V54  InChIKey          InChI                 1.03   NZFRFODKYHOBEA-UHFFFAOYSA-N  
V54  SMILES_CANONICAL  CACTVS                3.385  "Nc1cccc(CNCc2cccc(OCc3ccc4ccc(N)nc4c3)c2)n1"  
V54  SMILES            CACTVS                3.385  "Nc1cccc(CNCc2cccc(OCc3ccc4ccc(N)nc4c3)c2)n1"  
V54  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(cc(c1)OCc2ccc3ccc(nc3c2)N)CNCc4cccc(n4)N"  
V54  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(cc(c1)OCc2ccc3ccc(nc3c2)N)CNCc4cccc(n4)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
V54  "SYSTEMATIC NAME"  ACDLabs               12.01  "7-{[3-({[(6-aminopyridin-2-yl)methyl]amino}methyl)phenoxy]methyl}quinolin-2-amine"  
V54  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "7-[[3-[[(6-azanylpyridin-2-yl)methylamino]methyl]phenoxy]methyl]quinolin-2-amine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V54  "Create component"  2020-06-26  RCSB  
V54  "Initial release"   2021-06-30  RCSB  
##
