data_SI4
#

_chem_comp.id                                   SI4
_chem_comp.name                                 "[CuII(biot-pr-dpea)]2+"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H38 Cu N6 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-05-26
_chem_comp.pdbx_modified_date                   2016-07-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       574.241
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SI4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  Y
_chem_comp.pdbx_model_coordinates_db_code       5K67
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SI4  O3   O1   O   0  1  N  N  N  14.339  29.364   -8.287  ?  ?  ?  O3   SI4   1  
SI4  C9   C1   C   0  1  N  N  N  15.568  29.346   -8.578  ?  ?  ?  C9   SI4   2  
SI4  N1   N1   N   0  1  N  N  N  16.519  29.354   -7.664  ?  ?  ?  N1   SI4   3  
SI4  N2   N2   N   0  1  N  N  N  16.028  29.062   -9.780  ?  ?  ?  N2   SI4   4  
SI4  C10  C2   C   0  1  N  N  S  17.500  29.123   -9.731  ?  ?  ?  C10  SI4   5  
SI4  C8   C3   C   0  1  N  N  R  17.845  29.399   -8.232  ?  ?  ?  C8   SI4   6  
SI4  C7   C4   C   0  1  N  N  N  18.568  28.187   -7.641  ?  ?  ?  C7   SI4   7  
SI4  S1   S1   S   0  1  N  N  N  18.004  26.729   -8.617  ?  ?  ?  S1   SI4   8  
SI4  C6   C5   C   0  1  N  N  S  18.077  27.733  -10.113  ?  ?  ?  C6   SI4   9  
SI4  C5   C6   C   0  1  N  N  N  17.609  27.172  -11.452  ?  ?  ?  C5   SI4  10  
SI4  C4   C7   C   0  1  N  N  N  18.291  25.896  -11.964  ?  ?  ?  C4   SI4  11  
SI4  C3   C8   C   0  1  N  N  N  17.623  25.401  -13.288  ?  ?  ?  C3   SI4  12  
SI4  C2   C9   C   0  1  N  N  N  18.501  24.220  -13.733  ?  ?  ?  C2   SI4  13  
SI4  C1   C10  C   0  1  N  N  N  19.749  24.621  -14.459  ?  ?  ?  C1   SI4  14  
SI4  N6   N3   N   0  1  N  N  N  20.916  23.874  -14.205  ?  ?  ?  N6   SI4  15  
SI4  O2   O2   O   0  1  N  N  N  19.816  25.742  -15.022  ?  ?  ?  O2   SI4  16  
SI4  C27  C11  C   0  1  N  N  N  22.022  24.049  -15.243  ?  ?  ?  C27  SI4  17  
SI4  C12  C12  C   0  1  N  N  N  23.195  25.025  -15.117  ?  ?  ?  C12  SI4  18  
SI4  C11  C13  C   0  1  N  N  N  23.990  25.357  -16.399  ?  ?  ?  C11  SI4  19  
SI4  N3   N4   N   0  1  N  N  N  25.484  25.114  -16.560  ?  ?  ?  N3   SI4  20  
SI4  CU   CU1  CU  0  0  N  N  N  26.427  24.302  -14.698  ?  ?  ?  CU   SI4  21  
SI4  N5   N5   N   0  1  Y  N  N  27.172  26.142  -14.203  ?  ?  ?  N5   SI4  22  
SI4  N4   N6   N   0  1  Y  N  N  28.216  23.588  -15.753  ?  ?  ?  N4   SI4  23  
SI4  C26  C14  C   0  1  N  N  N  26.099  26.339  -17.232  ?  ?  ?  C26  SI4  24  
SI4  C25  C15  C   0  1  N  N  N  26.197  27.529  -16.315  ?  ?  ?  C25  SI4  25  
SI4  C24  C16  C   0  1  Y  N  N  26.977  27.287  -14.969  ?  ?  ?  C24  SI4  26  
SI4  C23  C17  C   0  1  Y  N  N  27.573  28.334  -14.425  ?  ?  ?  C23  SI4  27  
SI4  C22  C18  C   0  1  Y  N  N  28.292  28.189  -13.201  ?  ?  ?  C22  SI4  28  
SI4  C21  C19  C   0  1  Y  N  N  28.489  27.003  -12.456  ?  ?  ?  C21  SI4  29  
SI4  C20  C20  C   0  1  Y  N  N  27.841  25.947  -13.008  ?  ?  ?  C20  SI4  30  
SI4  C19  C21  C   0  1  N  N  N  25.693  24.260  -17.789  ?  ?  ?  C19  SI4  31  
SI4  C18  C22  C   0  1  N  N  N  26.604  23.027  -17.647  ?  ?  ?  C18  SI4  32  
SI4  C17  C23  C   0  1  Y  N  N  28.050  23.096  -17.036  ?  ?  ?  C17  SI4  33  
SI4  C16  C24  C   0  1  Y  N  N  29.233  22.603  -17.725  ?  ?  ?  C16  SI4  34  
SI4  C15  C25  C   0  1  Y  N  N  30.549  22.648  -17.169  ?  ?  ?  C15  SI4  35  
SI4  C14  C26  C   0  1  Y  N  N  30.737  23.158  -15.834  ?  ?  ?  C14  SI4  36  
SI4  C13  C27  C   0  1  Y  N  N  29.523  23.608  -15.199  ?  ?  ?  C13  SI4  37  
SI4  H1   H1   H   0  1  N  N  N  16.340  29.331   -6.680  ?  ?  ?  H1   SI4  38  
SI4  H2   H2   H   0  1  N  N  N  15.475  28.843  -10.584  ?  ?  ?  H2   SI4  39  
SI4  H3   H3   H   0  1  N  N  N  17.907  29.913  -10.380  ?  ?  ?  H3   SI4  40  
SI4  H4   H4   H   0  1  N  N  N  18.383  30.347   -8.083  ?  ?  ?  H4   SI4  41  
SI4  H5   H5   H   0  1  N  N  N  18.301  28.063   -6.581  ?  ?  ?  H5   SI4  42  
SI4  H6   H6   H   0  1  N  N  N  19.657  28.310   -7.733  ?  ?  ?  H6   SI4  43  
SI4  H7   H7   H   0  1  N  N  N  19.157  27.903  -10.237  ?  ?  ?  H7   SI4  44  
SI4  H8   H8   H   0  1  N  N  N  17.764  27.955  -12.209  ?  ?  ?  H8   SI4  45  
SI4  H9   H9   H   0  1  N  N  N  16.534  26.957  -11.361  ?  ?  ?  H9   SI4  46  
SI4  H10  H10  H   0  1  N  N  N  18.204  25.109  -11.200  ?  ?  ?  H10  SI4  47  
SI4  H11  H11  H   0  1  N  N  N  19.354  26.107  -12.153  ?  ?  ?  H11  SI4  48  
SI4  H12  H12  H   0  1  N  N  N  17.625  26.197  -14.047  ?  ?  ?  H12  SI4  49  
SI4  H13  H13  H   0  1  N  N  N  16.590  25.072  -13.104  ?  ?  ?  H13  SI4  50  
SI4  H14  H14  H   0  1  N  N  N  17.905  23.579  -14.400  ?  ?  ?  H14  SI4  51  
SI4  H15  H15  H   0  1  N  N  N  18.791  23.649  -12.838  ?  ?  ?  H15  SI4  52  
SI4  H16  H16  H   0  1  N  N  N  21.012  23.277  -13.409  ?  ?  ?  H16  SI4  53  
SI4  H17  H17  H   0  1  N  N  N  21.509  24.326  -16.176  ?  ?  ?  H17  SI4  54  
SI4  H18  H18  H   0  1  N  N  N  23.903  24.597  -14.392  ?  ?  ?  H18  SI4  55  
SI4  H19  H19  H   0  1  N  N  N  23.843  26.433  -16.571  ?  ?  ?  H19  SI4  56  
SI4  H20  H20  H   0  1  N  N  N  23.506  24.787  -17.206  ?  ?  ?  H20  SI4  57  
SI4  H21  H21  H   0  1  N  N  N  27.111  26.078  -17.577  ?  ?  ?  H21  SI4  58  
SI4  H22  H22  H   0  1  N  N  N  25.477  26.614  -18.096  ?  ?  ?  H22  SI4  59  
SI4  H23  H23  H   0  1  N  N  N  26.707  28.336  -16.861  ?  ?  ?  H23  SI4  60  
SI4  H24  H24  H   0  1  N  N  N  25.175  27.846  -16.062  ?  ?  ?  H24  SI4  61  
SI4  H25  H25  H   0  1  N  N  N  27.516  29.299  -14.907  ?  ?  ?  H25  SI4  62  
SI4  H26  H26  H   0  1  N  N  N  28.736  29.087  -12.798  ?  ?  ?  H26  SI4  63  
SI4  H27  H27  H   0  1  N  N  N  29.084  26.945  -11.556  ?  ?  ?  H27  SI4  64  
SI4  H28  H28  H   0  1  N  N  N  27.847  24.980  -12.527  ?  ?  ?  H28  SI4  65  
SI4  H29  H29  H   0  1  N  N  N  26.127  24.903  -18.568  ?  ?  ?  H29  SI4  66  
SI4  H30  H30  H   0  1  N  N  N  24.705  23.904  -18.116  ?  ?  ?  H30  SI4  67  
SI4  H31  H31  H   0  1  N  N  N  26.047  22.309  -17.027  ?  ?  ?  H31  SI4  68  
SI4  H32  H32  H   0  1  N  N  N  26.723  22.620  -18.662  ?  ?  ?  H32  SI4  69  
SI4  H33  H33  H   0  1  N  N  N  29.110  22.180  -18.711  ?  ?  ?  H33  SI4  70  
SI4  H34  H34  H   0  1  N  N  N  31.395  22.303  -17.744  ?  ?  ?  H34  SI4  71  
SI4  H35  H35  H   0  1  N  N  N  31.702  23.199  -15.352  ?  ?  ?  H35  SI4  72  
SI4  H36  H36  H   0  1  N  N  N  29.618  24.001  -14.198  ?  ?  ?  H36  SI4  73  
SI4  H37  H37  H   0  1  N  N  N  22.478  23.055  -15.357  ?  ?  ?  H37  SI4  74  
SI4  H38  H38  H   0  1  N  N  N  22.795  25.971  -14.724  ?  ?  ?  H38  SI4  75  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SI4  C19  C18  SING  N  N   1  
SI4  C19  N3   SING  N  N   2  
SI4  C16  C15  DOUB  Y  N   3  
SI4  C16  C17  SING  Y  N   4  
SI4  C18  C17  SING  N  N   5  
SI4  C26  N3   SING  N  N   6  
SI4  C26  C25  SING  N  N   7  
SI4  C15  C14  SING  Y  N   8  
SI4  C17  N4   DOUB  Y  N   9  
SI4  N3   C11  SING  N  N  10  
SI4  N3   CU   SING  N  N  11  
SI4  C11  C12  SING  N  N  12  
SI4  C25  C24  SING  N  N  13  
SI4  C14  C13  DOUB  Y  N  14  
SI4  N4   C13  SING  Y  N  15  
SI4  N4   CU   SING  N  N  16  
SI4  C27  C12  SING  N  N  17  
SI4  C27  N6   SING  N  N  18  
SI4  O2   C1   DOUB  N  N  19  
SI4  C24  C23  DOUB  Y  N  20  
SI4  C24  N5   SING  Y  N  21  
SI4  CU   N5   SING  N  N  22  
SI4  C1   N6   SING  N  N  23  
SI4  C1   C2   SING  N  N  24  
SI4  C23  C22  SING  Y  N  25  
SI4  N5   C20  DOUB  Y  N  26  
SI4  C2   C3   SING  N  N  27  
SI4  C3   C4   SING  N  N  28  
SI4  C22  C21  DOUB  Y  N  29  
SI4  C20  C21  SING  Y  N  30  
SI4  C4   C5   SING  N  N  31  
SI4  C5   C6   SING  N  N  32  
SI4  C6   C10  SING  N  N  33  
SI4  C6   S1   SING  N  N  34  
SI4  N2   C10  SING  N  N  35  
SI4  N2   C9   SING  N  N  36  
SI4  C10  C8   SING  N  N  37  
SI4  S1   C7   SING  N  N  38  
SI4  C9   O3   DOUB  N  N  39  
SI4  C9   N1   SING  N  N  40  
SI4  C8   N1   SING  N  N  41  
SI4  C8   C7   SING  N  N  42  
SI4  N1   H1   SING  N  N  43  
SI4  N2   H2   SING  N  N  44  
SI4  C10  H3   SING  N  N  45  
SI4  C8   H4   SING  N  N  46  
SI4  C7   H5   SING  N  N  47  
SI4  C7   H6   SING  N  N  48  
SI4  C6   H7   SING  N  N  49  
SI4  C5   H8   SING  N  N  50  
SI4  C5   H9   SING  N  N  51  
SI4  C4   H10  SING  N  N  52  
SI4  C4   H11  SING  N  N  53  
SI4  C3   H12  SING  N  N  54  
SI4  C3   H13  SING  N  N  55  
SI4  C2   H14  SING  N  N  56  
SI4  C2   H15  SING  N  N  57  
SI4  N6   H16  SING  N  N  58  
SI4  C27  H17  SING  N  N  59  
SI4  C12  H18  SING  N  N  60  
SI4  C11  H19  SING  N  N  61  
SI4  C11  H20  SING  N  N  62  
SI4  C26  H21  SING  N  N  63  
SI4  C26  H22  SING  N  N  64  
SI4  C25  H23  SING  N  N  65  
SI4  C25  H24  SING  N  N  66  
SI4  C23  H25  SING  N  N  67  
SI4  C22  H26  SING  N  N  68  
SI4  C21  H27  SING  N  N  69  
SI4  C20  H28  SING  N  N  70  
SI4  C19  H29  SING  N  N  71  
SI4  C19  H30  SING  N  N  72  
SI4  C18  H31  SING  N  N  73  
SI4  C18  H32  SING  N  N  74  
SI4  C16  H33  SING  N  N  75  
SI4  C15  H34  SING  N  N  76  
SI4  C14  H35  SING  N  N  77  
SI4  C13  H36  SING  N  N  78  
SI4  C27  H37  SING  N  N  79  
SI4  C12  H38  SING  N  N  80  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SI4  InChI             InChI                 1.03   "InChI=1S/C27H38N6O2S.Cu/c34-25(11-2-1-10-24-26-23(20-36-24)31-27(35)32-26)30-16-7-17-33(18-12-21-8-3-5-14-28-21)19-13-22-9-4-6-15-29-22;/h3-6,8-9,14-15,23-24,26H,1-2,7,10-13,16-20H2,(H,30,34)(H2,31,32,35);/t23-,24-,26-;/m0./s1"  
SI4  InChIKey          InChI                 1.03   NPWCVTSEWPDIKA-PEOCGFDUSA-N  
SI4  SMILES_CANONICAL  CACTVS                3.385  "[Cu].O=C(CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12)NCCCN(CCc3ccccn3)CCc4ccccn4"  
SI4  SMILES            CACTVS                3.385  "[Cu].O=C(CCCC[CH]1SC[CH]2NC(=O)N[CH]12)NCCCN(CCc3ccccn3)CCc4ccccn4"  
SI4  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.5  "C1C[N]2(CCC3=CC=CC=[N]3[Cu]2[N]4=C1C=CC=C4)CCCNC(=O)CCCC[C@H]5[C@@H]6[C@H](CS5)NC(=O)N6"  
SI4  SMILES            "OpenEye OEToolkits"  2.0.5  "C1C[N]2(CCC3=CC=CC=[N]3[Cu]2[N]4=C1C=CC=C4)CCCNC(=O)CCCCC5C6C(CS5)NC(=O)N6"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SI4  "Create component"    2016-05-26  EBI   
SI4  "Other modification"  2016-06-01  EBI   
SI4  "Other modification"  2016-06-02  RCSB  
SI4  "Initial release"     2016-07-20  RCSB  
##
