data_S54
# 
_chem_comp.id                                    S54 
_chem_comp.name                                  "N-(benzylsulfonyl)-D-valyl-N-(4-carbamimidoylbenzyl)-L-prolinamide" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H33 N5 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-04-25 
_chem_comp.pdbx_modified_date                    2012-04-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        499.626 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S54 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3RM0 
_chem_comp.pdbx_subcomponent_list                "PMS DVA PRO 00S" 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S54 C7   C7   C 0 1 N N N 14.696 -15.459 21.144 -5.353 0.078  -0.064 C    PMS 1  
S54 S8   S8   S 0 1 N N N 15.407 -16.761 21.941 -3.964 -0.347 -1.151 S    PMS 2  
S54 C4   C4   C 0 1 Y N N 13.700 -15.898 20.087 -6.148 -1.164 0.244  C1   PMS 3  
S54 C5   C5   C 0 1 Y N N 12.340 -15.912 20.376 -7.201 -1.531 -0.573 C2   PMS 4  
S54 C6   C6   C 0 1 Y N N 11.424 -16.324 19.413 -7.933 -2.669 -0.289 C3   PMS 5  
S54 C1   C1   C 0 1 Y N N 11.865 -16.711 18.153 -7.609 -3.441 0.811  C4   PMS 6  
S54 C2   C2   C 0 1 Y N N 13.223 -16.693 17.858 -6.556 -3.075 1.628  C5   PMS 7  
S54 C3   C3   C 0 1 Y N N 14.137 -16.289 18.824 -5.826 -1.936 1.344  C6   PMS 8  
S54 O22  O22  O 0 1 N N N 14.373 -17.539 22.557 -3.079 -1.248 -0.499 O2S  PMS 9  
S54 O23  O23  O 0 1 N N N 16.215 -17.532 21.031 -4.423 -0.599 -2.472 O1S  PMS 10 
S54 N9   N9   N 0 1 N N N 16.352 -16.183 23.113 -3.095 1.056  -1.281 N    DVA 11 
S54 C10  C10  C 0 1 N N R 17.679 -15.651 22.819 -2.486 1.653  -0.090 CA   DVA 12 
S54 C18  C18  C 0 1 N N N 18.601 -15.829 24.019 -2.898 3.123  0.012  CB   DVA 13 
S54 C19  C19  C 0 1 N N N 18.780 -17.307 24.378 -2.471 3.862  -1.258 CG1  DVA 14 
S54 C20  C20  C 0 1 N N N 18.069 -15.073 25.221 -4.417 3.217  0.170  CG2  DVA 15 
S54 C11  C11  C 0 1 N N N 17.592 -14.214 22.350 -0.985 1.559  -0.192 C    DVA 16 
S54 O17  O17  O 0 1 N N N 16.695 -13.465 22.732 -0.459 1.419  -1.276 O    DVA 17 
S54 N12  N12  N 0 1 N N N 18.519 -13.787 21.494 -0.228 1.630  0.920  N    PRO 18 
S54 C13  C13  C 0 1 N N S 18.458 -12.432 20.943 1.242  1.655  0.956  CA   PRO 19 
S54 C24  C24  C 0 1 N N N 17.146 -12.301 20.217 1.792  0.407  0.316  C    PRO 20 
S54 O33  O33  O 0 1 N N N 16.708 -13.243 19.557 1.036  -0.430 -0.130 O    PRO 21 
S54 C14  C14  C 0 1 N N N 19.599 -12.350 19.936 1.663  1.714  2.440  CB   PRO 22 
S54 C15  C15  C 0 1 N N N 20.470 -13.561 20.201 0.420  1.147  3.176  CG   PRO 23 
S54 C16  C16  C 0 1 N N N 19.610 -14.572 20.944 -0.736 1.701  2.303  CD   PRO 24 
S54 N25  N25  N 0 1 N N N 16.483 -11.157 20.330 3.125  0.220  0.240  N23  00S 25 
S54 C26  C26  C 0 1 N N N 15.204 -10.911 19.682 3.659  -0.994 -0.382 C16  00S 26 
S54 C27  C27  C 0 1 Y N N 14.130 -10.925 20.747 5.165  -0.958 -0.341 C17  00S 27 
S54 C32  C32  C 0 1 Y N N 13.869 -9.794  21.500 5.870  -0.393 -1.389 C22  00S 28 
S54 C31  C31  C 0 1 Y N N 12.884 -9.835  22.476 7.249  -0.352 -1.354 C21  00S 29 
S54 C30  C30  C 0 1 Y N N 12.148 -10.987 22.707 7.932  -0.891 -0.264 C24  00S 30 
S54 C34  C34  C 0 1 N N N 11.089 -11.011 23.767 9.412  -0.855 -0.222 C27  00S 31 
S54 N35  N35  N 0 1 N N N 10.481 -12.087 24.067 10.048 -1.359 0.797  N35  00S 32 
S54 N36  N36  N 0 1 N N N 10.789 -9.889  24.408 10.117 -0.289 -1.262 N34  00S 33 
S54 C29  C29  C 0 1 Y N N 12.416 -12.121 21.958 7.216  -1.464 0.787  C19  00S 34 
S54 C28  C28  C 0 1 Y N N 13.402 -12.084 20.977 5.838  -1.494 0.743  C18  00S 35 
S54 H7   H7   H 0 1 N N N 15.489 -14.875 20.654 -5.994 0.806  -0.562 H2A  PMS 36 
S54 H7A  H7A  H 0 1 N N N 14.167 -14.843 21.886 -4.971 0.505  0.863  H1   PMS 37 
S54 H5   H5   H 0 1 N N N 11.994 -15.602 21.351 -7.454 -0.927 -1.432 H2   PMS 38 
S54 H6   H6   H 0 1 N N N 10.369 -16.343 19.645 -8.756 -2.955 -0.927 H3   PMS 39 
S54 H1   H1   H 0 1 N N N 11.153 -17.025 17.404 -8.177 -4.334 1.030  H4   PMS 40 
S54 H2   H2   H 0 1 N N N 13.568 -16.993 16.879 -6.304 -3.678 2.487  H5   PMS 41 
S54 H3   H3   H 0 1 N N N 15.192 -16.278 18.594 -5.003 -1.650 1.982  H6   PMS 42 
S54 HN9  HN9  H 0 1 N N N 15.842 -15.428 23.525 -2.990 1.484  -2.145 H    DVA 43 
S54 H10  H10  H 0 1 N N N 18.121 -16.222 21.989 -2.824 1.119  0.798  HA   DVA 44 
S54 H18  H18  H 0 1 N N N 19.583 -15.420 23.739 -2.414 3.577  0.877  HB   DVA 45 
S54 H19  H19  H 0 1 N N N 19.450 -17.395 25.246 -3.015 3.460  -2.112 HG11 DVA 46 
S54 H19A H19A H 0 0 N N N 17.802 -17.746 24.624 -2.694 4.924  -1.153 HG12 DVA 47 
S54 H19B H19B H 0 0 N N N 19.217 -17.842 23.522 -1.401 3.729  -1.413 HG13 DVA 48 
S54 H20  H20  H 0 1 N N N 18.749 -15.215 26.074 -4.734 2.595  1.008  HG21 DVA 49 
S54 H20A H20A H 0 0 N N N 18.002 -14.002 24.980 -4.700 4.253  0.359  HG22 DVA 50 
S54 H20B H20B H 0 0 N N N 17.070 -15.454 25.481 -4.900 2.870  -0.743 HG23 DVA 51 
S54 H13  H13  H 0 1 N N N 18.539 -11.647 21.710 1.610  2.537  0.431  HA   PRO 52 
S54 H14  H14  H 0 1 N N N 19.212 -12.367 18.907 2.536  1.086  2.618  HB2  PRO 53 
S54 H14A H14A H 0 0 N N N 20.172 -11.421 20.072 1.857  2.742  2.745  HB3  PRO 54 
S54 H15  H15  H 0 1 N N N 20.829 -13.988 19.253 0.429  0.057  3.175  HG2  PRO 55 
S54 H15A H15A H 0 0 N N N 21.341 -13.279 20.811 0.359  1.534  4.193  HG3  PRO 56 
S54 H16  H16  H 0 1 N N N 20.182 -15.070 21.741 -0.958 2.733  2.572  HD2  PRO 57 
S54 H16A H16A H 0 0 N N N 19.235 -15.351 20.264 -1.625 1.079  2.412  HD3  PRO 58 
S54 HN25 HN25 H 0 0 N N N 16.882 -10.429 20.887 3.729  0.889  0.596  HN23 00S 59 
S54 H26  H26  H 0 1 N N N 15.220 -9.933  19.178 3.302  -1.868 0.161  H16  00S 60 
S54 H26A H26A H 0 0 N N N 15.004 -11.695 18.936 3.326  -1.048 -1.419 H16A 00S 61 
S54 H32  H32  H 0 1 N N N 14.428 -8.886  21.329 5.340  0.020  -2.234 H22  00S 62 
S54 H31  H31  H 0 1 N N N 12.687 -8.953  23.067 7.798  0.093  -2.170 H21  00S 63 
S54 HN35 HN35 H 0 0 N N N 9.809  -11.947 24.795 11.017 -1.335 0.824  HN35 00S 64 
S54 HN36 HN36 H 0 0 N N N 10.089 -9.893  25.122 9.644  0.086  -2.021 HN34 00S 65 
S54 HN3A HN3A H 0 0 N N N 11.263 -9.039  24.177 11.086 -0.265 -1.235 HN3A 00S 66 
S54 H29  H29  H 0 1 N N N 11.862 -13.031 22.135 7.740  -1.883 1.634  H19  00S 67 
S54 H28  H28  H 0 1 N N N 13.603 -12.967 20.388 5.282  -1.938 1.556  H18  00S 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S54 C1  C2   DOUB Y N 1  
S54 C1  C6   SING Y N 2  
S54 C2  C3   SING Y N 3  
S54 C3  C4   DOUB Y N 4  
S54 C4  C5   SING Y N 5  
S54 C4  C7   SING N N 6  
S54 C5  C6   DOUB Y N 7  
S54 C7  S8   SING N N 8  
S54 S8  N9   SING N N 9  
S54 S8  O22  DOUB N N 10 
S54 S8  O23  DOUB N N 11 
S54 N9  C10  SING N N 12 
S54 C10 C11  SING N N 13 
S54 C10 C18  SING N N 14 
S54 C11 N12  SING N N 15 
S54 C11 O17  DOUB N N 16 
S54 N12 C13  SING N N 17 
S54 N12 C16  SING N N 18 
S54 C13 C14  SING N N 19 
S54 C13 C24  SING N N 20 
S54 C14 C15  SING N N 21 
S54 C15 C16  SING N N 22 
S54 C18 C19  SING N N 23 
S54 C18 C20  SING N N 24 
S54 C24 N25  SING N N 25 
S54 C24 O33  DOUB N N 26 
S54 N25 C26  SING N N 27 
S54 C26 C27  SING N N 28 
S54 C27 C28  DOUB Y N 29 
S54 C27 C32  SING Y N 30 
S54 C28 C29  SING Y N 31 
S54 C29 C30  DOUB Y N 32 
S54 C30 C31  SING Y N 33 
S54 C30 C34  SING N N 34 
S54 C31 C32  DOUB Y N 35 
S54 C34 N35  DOUB N N 36 
S54 C34 N36  SING N N 37 
S54 C1  H1   SING N N 38 
S54 C2  H2   SING N N 39 
S54 C3  H3   SING N N 40 
S54 C5  H5   SING N N 41 
S54 C6  H6   SING N N 42 
S54 C7  H7   SING N N 43 
S54 C7  H7A  SING N N 44 
S54 N9  HN9  SING N N 45 
S54 C10 H10  SING N N 46 
S54 C13 H13  SING N N 47 
S54 C14 H14  SING N N 48 
S54 C14 H14A SING N N 49 
S54 C15 H15  SING N N 50 
S54 C15 H15A SING N N 51 
S54 C16 H16  SING N N 52 
S54 C16 H16A SING N N 53 
S54 C18 H18  SING N N 54 
S54 C19 H19  SING N N 55 
S54 C19 H19A SING N N 56 
S54 C19 H19B SING N N 57 
S54 C20 H20  SING N N 58 
S54 C20 H20A SING N N 59 
S54 C20 H20B SING N N 60 
S54 N25 HN25 SING N N 61 
S54 C26 H26  SING N N 62 
S54 C26 H26A SING N N 63 
S54 C28 H28  SING N N 64 
S54 C29 H29  SING N N 65 
S54 C31 H31  SING N N 66 
S54 C32 H32  SING N N 67 
S54 N35 HN35 SING N N 68 
S54 N36 HN36 SING N N 69 
S54 N36 HN3A SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S54 SMILES           ACDLabs              12.01 "O=C(NCc1ccc(C(=[N@H])N)cc1)C3N(C(=O)C(NS(=O)(=O)Cc2ccccc2)C(C)C)CCC3" 
S54 SMILES_CANONICAL CACTVS               3.370 "CC(C)[C@@H](N[S](=O)(=O)Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)NCc3ccc(cc3)C(N)=N" 
S54 SMILES           CACTVS               3.370 "CC(C)[CH](N[S](=O)(=O)Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)NCc3ccc(cc3)C(N)=N" 
S54 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "[H]/N=C(/c1ccc(cc1)CNC(=O)[C@@H]2CCCN2C(=O)[C@@H](C(C)C)NS(=O)(=O)Cc3ccccc3)\\N" 
S54 SMILES           "OpenEye OEToolkits" 1.7.2 "CC(C)C(C(=O)N1CCCC1C(=O)NCc2ccc(cc2)C(=N)N)NS(=O)(=O)Cc3ccccc3" 
S54 InChI            InChI                1.03  
"InChI=1S/C25H33N5O4S/c1-17(2)22(29-35(33,34)16-19-7-4-3-5-8-19)25(32)30-14-6-9-21(30)24(31)28-15-18-10-12-20(13-11-18)23(26)27/h3-5,7-8,10-13,17,21-22,29H,6,9,14-16H2,1-2H3,(H3,26,27)(H,28,31)/t21-,22+/m0/s1" 
S54 InChIKey         InChI                1.03  BTZOUFLORPKMGE-FCHUYYIVSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
S54 "SYSTEMATIC NAME" ACDLabs              12.01 "N-(benzylsulfonyl)-D-valyl-N-(4-carbamimidoylbenzyl)-L-prolinamide"                                                        
S54 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2S)-N-[(4-carbamimidoylphenyl)methyl]-1-[(2R)-3-methyl-2-[(phenylmethyl)sulfonylamino]butanoyl]pyrrolidine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S54 "Create component"     2011-04-25 PDBJ 
S54 "Modify aromatic_flag" 2011-06-04 RCSB 
S54 "Modify descriptor"    2011-06-04 RCSB 
# 
