data_Q34
#

_chem_comp.id                                   Q34
_chem_comp.name                                 "5'-{[(3S)-3-amino-3-carboxypropyl]({1-[(4-chlorophenyl)methyl]azetidin-3-yl}methyl)amino}-5'-deoxyadenosine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H33 Cl N8 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-09-11
_chem_comp.pdbx_modified_date                   2020-06-26
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       561.033
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Q34
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6U9N
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Q34  O3   O1   O   0  1  N  N  N  235.853  173.514  227.590   3.528  -6.018   1.578  O3   Q34   1  
Q34  C24  C1   C   0  1  N  N  N  235.228  173.318  226.548   3.218  -5.815   0.428  C24  Q34   2  
Q34  O2   O2   O   0  1  N  N  N  233.919  173.587  226.494   4.146  -5.880  -0.539  O2   Q34   3  
Q34  C23  C2   C   0  1  N  N  S  235.773  172.789  225.230   1.787  -5.496   0.079  C23  Q34   4  
Q34  N7   N1   N   0  1  N  N  N  234.749  172.615  224.183   0.909  -5.911   1.181  N7   Q34   5  
Q34  C22  C3   C   0  1  N  N  N  236.852  173.773  224.741   1.642  -3.990  -0.150  C22  Q34   6  
Q34  C21  C4   C   0  1  N  N  N  238.033  172.984  224.124   0.226  -3.683  -0.643  C21  Q34   7  
Q34  N5   N2   N   0  1  N  N  N  238.663  171.940  225.001   0.047  -2.229  -0.742  N5   Q34   8  
Q34  C9   C5   C   0  1  N  N  N  239.466  170.885  224.277   0.802  -1.681  -1.877  C9   Q34   9  
Q34  C8   C6   C   0  1  N  N  R  238.645  169.594  224.370   0.924  -0.164  -1.723  C8   Q34  10  
Q34  C7   C7   C   0  1  N  N  S  239.374  168.420  223.660   1.684   0.439  -2.925  C7   Q34  11  
Q34  O1   O3   O   0  1  N  N  N  240.309  167.790  224.476   0.766   0.974  -3.881  O1   Q34  12  
Q34  C6   C8   C   0  1  N  N  R  238.174  167.478  223.437   2.537   1.567  -2.304  C6   Q34  13  
Q34  O    O4   O   0  1  N  N  N  237.807  166.848  224.603   2.171   2.834  -2.856  O    Q34  14  
Q34  O4   O5   O   0  1  N  N  N  237.386  169.740  223.720   1.734   0.161  -0.572  O4   Q34  15  
Q34  C5   C9   C   0  1  N  N  R  237.009  168.530  223.152   2.192   1.513  -0.799  C5   Q34  16  
Q34  N4   N3   N   0  1  Y  N  N  236.802  168.716  221.701   3.382   1.791   0.008  N4   Q34  17  
Q34  C2   C10  C   0  1  Y  N  N  236.161  167.873  220.809   3.848   3.031   0.367  C2   Q34  18  
Q34  N2   N4   N   0  1  Y  N  N  235.469  166.700  221.031   3.452   4.281   0.150  N2   Q34  19  
Q34  C1   C11  C   0  1  Y  N  N  235.026  166.148  219.888   4.132   5.295   0.643  C1   Q34  20  
Q34  N1   N5   N   0  1  Y  N  N  235.184  166.590  218.601   5.224   5.131   1.367  N1   Q34  21  
Q34  C4   C12  C   0  1  Y  N  N  237.315  169.791  220.925   4.227   0.866   0.544  C4   Q34  22  
Q34  N3   N6   N   0  1  Y  N  N  237.069  169.666  219.632   5.180   1.462   1.201  N3   Q34  23  
Q34  C3   C13  C   0  1  Y  N  N  236.363  168.460  219.528   5.005   2.804   1.131  C3   Q34  24  
Q34  C    C14  C   0  1  Y  N  N  235.859  167.752  218.409   5.696   3.919   1.635  C    Q34  25  
Q34  N    N7   N   0  1  N  N  N  236.029  168.211  217.140   6.842   3.757   2.394  N    Q34  26  
Q34  C10  C15  C   0  1  N  N  N  239.198  172.370  226.316  -1.377  -1.879  -0.839  C10  Q34  27  
Q34  C11  C16  C   0  1  N  N  N  239.234  171.187  227.334  -2.082  -2.245   0.469  C11  Q34  28  
Q34  C20  C17  C   0  1  N  N  N  239.278  171.558  228.840  -2.051  -1.125   1.524  C20  Q34  29  
Q34  N6   N8   N   0  1  N  N  N  237.764  171.489  228.880  -3.329  -0.669   0.933  N6   Q34  30  
Q34  C12  C18  C   0  1  N  N  N  237.846  170.556  227.709  -3.606  -2.032   0.431  C12  Q34  31  
Q34  C13  C19  C   0  1  N  N  N  237.199  170.929  230.156  -4.286  -0.288   1.980  C13  Q34  32  
Q34  C14  C20  C   0  1  Y  N  N  235.814  170.395  229.896  -5.473   0.396   1.351  C14  Q34  33  
Q34  C19  C21  C   0  1  Y  N  N  234.761  171.295  229.637  -6.565  -0.348   0.946  C19  Q34  34  
Q34  C18  C22  C   0  1  Y  N  N  233.472  170.810  229.320  -7.653   0.279   0.369  C18  Q34  35  
Q34  C17  C23  C   0  1  Y  N  N  233.259  169.417  229.282  -7.649   1.652   0.197  C17  Q34  36  
Q34  CL   CL1  CL  0  0  N  N  N  231.673  168.816  228.817  -9.016   2.441  -0.527  CL   Q34  37  
Q34  C16  C24  C   0  1  Y  N  N  234.284  168.503  229.563  -6.556   2.396   0.603  C16  Q34  38  
Q34  C15  C25  C   0  1  Y  N  N  235.573  168.998  229.870  -5.470   1.769   1.185  C15  Q34  39  
Q34  H30  H1   H   0  1  N  N  N  233.629  173.919  227.335   5.062  -6.018  -0.260  H30  Q34  40  
Q34  H4   H2   H   0  1  N  N  N  236.256  171.819  225.420   1.507  -6.030  -0.829  H4   Q34  41  
Q34  H33  H3   H   0  1  N  N  N  234.050  171.976  224.503   0.938  -6.911   1.310  H33  Q34  42  
Q34  H32  H4   H   0  1  N  N  N  234.326  173.498  223.981   1.149  -5.430   2.035  H32  Q34  43  
Q34  H28  H6   H   0  1  N  N  N  237.215  174.370  225.590   1.823  -3.462   0.786  H28  Q34  44  
Q34  H29  H7   H   0  1  N  N  N  236.421  174.441  223.981   2.365  -3.665  -0.897  H29  Q34  45  
Q34  H27  H8   H   0  1  N  N  N  237.664  172.482  223.217   0.077  -4.135  -1.623  H27  Q34  46  
Q34  H26  H9   H   0  1  N  N  N  238.814  173.708  223.850  -0.500  -4.092   0.060  H26  Q34  47  
Q34  H11  H11  H   0  1  N  N  N  240.445  170.751  224.760   1.797  -2.126  -1.899  H11  Q34  48  
Q34  H12  H12  H   0  1  N  N  N  239.612  171.171  223.225   0.280  -1.911  -2.805  H12  Q34  49  
Q34  H3   H13  H   0  1  N  N  N  238.504  169.334  225.430  -0.063   0.289  -1.632  H3   Q34  50  
Q34  H2   H14  H   0  1  N  N  N  239.794  168.751  222.698   2.322  -0.313  -3.390  H2   Q34  51  
Q34  H10  H15  H   0  1  N  N  N  241.050  168.369  224.615   1.189   1.365  -4.657  H10  Q34  52  
Q34  H1   H16  H   0  1  N  N  N  238.328  166.809  222.577   3.598   1.375  -2.461  H1   Q34  53  
Q34  H9   H17  H   0  1  N  N  N  238.463  166.201  224.834   2.310   2.901  -3.810  H9   Q34  54  
Q34  H    H18  H   0  1  N  N  N  236.085  168.150  223.612   1.399   2.224  -0.566  H    Q34  55  
Q34  H7   H19  H   0  1  N  N  N  234.469  165.230  220.000   3.783   6.299   0.448  H7   Q34  56  
Q34  H8   H20  H   0  1  N  N  N  237.852  170.626  221.349   4.122  -0.203   0.440  H8   Q34  57  
Q34  H5   H21  H   0  1  N  N  N  235.600  167.578  216.496   7.311   4.534   2.737  H5   Q34  58  
Q34  H6   H22  H   0  1  N  N  N  235.606  169.113  217.052   7.177   2.866   2.584  H6   Q34  59  
Q34  H13  H23  H   0  1  N  N  N  240.220  172.754  226.178  -1.477  -0.809  -1.019  H13  Q34  60  
Q34  H14  H24  H   0  1  N  N  N  238.557  173.169  226.719  -1.831  -2.430  -1.663  H14  Q34  61  
Q34  H15  H25  H   0  1  N  N  N  239.980  170.425  227.065  -1.785  -3.221   0.853  H15  Q34  62  
Q34  H25  H26  H   0  1  N  N  N  239.781  170.814  229.474  -2.144  -1.484   2.549  H25  Q34  63  
Q34  H24  H27  H   0  1  N  N  N  239.691  172.556  229.048  -1.230  -0.420   1.392  H24  Q34  64  
Q34  H16  H29  H   0  1  N  N  N  237.061  170.708  226.954  -4.028  -2.053  -0.574  H16  Q34  65  
Q34  H17  H30  H   0  1  N  N  N  237.892  169.491  227.981  -4.155  -2.657   1.136  H17  Q34  66  
Q34  H18  H31  H   0  1  N  N  N  237.845  170.115  230.518  -4.620  -1.181   2.509  H18  Q34  67  
Q34  H19  H32  H   0  1  N  N  N  237.150  171.723  230.916  -3.805   0.392   2.683  H19  Q34  68  
Q34  H23  H33  H   0  1  N  N  N  234.940  172.359  229.681  -6.568  -1.419   1.079  H23  Q34  69  
Q34  H22  H34  H   0  1  N  N  N  232.664  171.495  229.110  -8.506  -0.302   0.052  H22  Q34  70  
Q34  H21  H35  H   0  1  N  N  N  234.093  167.440  229.545  -6.552   3.468   0.470  H21  Q34  71  
Q34  H20  H36  H   0  1  N  N  N  236.377  168.309  230.085  -4.617   2.350   1.502  H20  Q34  72  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Q34  N    C    SING  N  N   1  
Q34  C    N1   DOUB  Y  N   2  
Q34  C    C3   SING  Y  N   3  
Q34  N1   C1   SING  Y  N   4  
Q34  C3   N3   SING  Y  N   5  
Q34  C3   C2   DOUB  Y  N   6  
Q34  N3   C4   DOUB  Y  N   7  
Q34  C1   N2   DOUB  Y  N   8  
Q34  C2   N2   SING  Y  N   9  
Q34  C2   N4   SING  Y  N  10  
Q34  C4   N4   SING  Y  N  11  
Q34  N4   C5   SING  N  N  12  
Q34  C5   C6   SING  N  N  13  
Q34  C5   O4   SING  N  N  14  
Q34  C6   C7   SING  N  N  15  
Q34  C6   O    SING  N  N  16  
Q34  C7   C8   SING  N  N  17  
Q34  C7   O1   SING  N  N  18  
Q34  O4   C8   SING  N  N  19  
Q34  C21  C22  SING  N  N  20  
Q34  C21  N5   SING  N  N  21  
Q34  N7   C23  SING  N  N  22  
Q34  C9   C8   SING  N  N  23  
Q34  C9   N5   SING  N  N  24  
Q34  C22  C23  SING  N  N  25  
Q34  N5   C10  SING  N  N  26  
Q34  C23  C24  SING  N  N  27  
Q34  C10  C11  SING  N  N  28  
Q34  O2   C24  SING  N  N  29  
Q34  C24  O3   DOUB  N  N  30  
Q34  C11  C12  SING  N  N  31  
Q34  C11  C20  SING  N  N  32  
Q34  C12  N6   SING  N  N  33  
Q34  CL   C17  SING  N  N  34  
Q34  C20  N6   SING  N  N  35  
Q34  N6   C13  SING  N  N  36  
Q34  C17  C18  DOUB  Y  N  37  
Q34  C17  C16  SING  Y  N  38  
Q34  C18  C19  SING  Y  N  39  
Q34  C16  C15  DOUB  Y  N  40  
Q34  C19  C14  DOUB  Y  N  41  
Q34  C15  C14  SING  Y  N  42  
Q34  C14  C13  SING  N  N  43  
Q34  O2   H30  SING  N  N  44  
Q34  C23  H4   SING  N  N  45  
Q34  N7   H33  SING  N  N  46  
Q34  N7   H32  SING  N  N  47  
Q34  C22  H28  SING  N  N  48  
Q34  C22  H29  SING  N  N  49  
Q34  C21  H27  SING  N  N  50  
Q34  C21  H26  SING  N  N  51  
Q34  C9   H11  SING  N  N  52  
Q34  C9   H12  SING  N  N  53  
Q34  C8   H3   SING  N  N  54  
Q34  C7   H2   SING  N  N  55  
Q34  O1   H10  SING  N  N  56  
Q34  C6   H1   SING  N  N  57  
Q34  O    H9   SING  N  N  58  
Q34  C5   H    SING  N  N  59  
Q34  C1   H7   SING  N  N  60  
Q34  C4   H8   SING  N  N  61  
Q34  N    H5   SING  N  N  62  
Q34  N    H6   SING  N  N  63  
Q34  C10  H13  SING  N  N  64  
Q34  C10  H14  SING  N  N  65  
Q34  C11  H15  SING  N  N  66  
Q34  C20  H25  SING  N  N  67  
Q34  C20  H24  SING  N  N  68  
Q34  C12  H16  SING  N  N  69  
Q34  C12  H17  SING  N  N  70  
Q34  C13  H18  SING  N  N  71  
Q34  C13  H19  SING  N  N  72  
Q34  C19  H23  SING  N  N  73  
Q34  C18  H22  SING  N  N  74  
Q34  C16  H21  SING  N  N  75  
Q34  C15  H20  SING  N  N  76  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Q34  SMILES            ACDLabs               12.01  "O=C(O)C(N)CCN(CC1CN(C1)Cc2ccc(cc2)Cl)CC3C(O)C(O)C(O3)n5c4ncnc(c4nc5)N"  
Q34  InChI             InChI                 1.03   "InChI=1S/C25H33ClN8O5/c26-16-3-1-14(2-4-16)7-33-9-15(10-33)8-32(6-5-17(27)25(37)38)11-18-20(35)21(36)24(39-18)34-13-31-19-22(28)29-12-30-23(19)34/h1-4,12-13,15,17-18,20-21,24,35-36H,5-11,27H2,(H,37,38)(H2,28,29,30)/t17-,18+,20+,21+,24+/m0/s1"  
Q34  InChIKey          InChI                 1.03   BNFSVXBSRYHZTB-XCPBYIKRSA-N  
Q34  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H](CCN(CC1CN(C1)Cc2ccc(Cl)cc2)C[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)C(O)=O"  
Q34  SMILES            CACTVS                3.385  "N[CH](CCN(CC1CN(C1)Cc2ccc(Cl)cc2)C[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)C(O)=O"  
Q34  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1CN2CC(C2)CN(CC[C@@H](C(=O)O)N)C[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)Cl"  
Q34  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1CN2CC(C2)CN(CCC(C(=O)O)N)CC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)Cl"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Q34  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-{[(3S)-3-amino-3-carboxypropyl]({1-[(4-chlorophenyl)methyl]azetidin-3-yl}methyl)amino}-5'-deoxyadenosine"  
Q34  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[[1-[(4-chlorophenyl)methyl]azetidin-3-yl]methyl]amino]-2-azanyl-butanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Q34  "Create component"  2019-09-11  RCSB  
Q34  "Initial release"   2020-07-01  RCSB  
##
