data_O84
# 
_chem_comp.id                                    O84 
_chem_comp.name                                  "[(2~{R},4~{a}~{R},6~{R},7~{a}~{R})-6-[2,4-bis(oxidanylidene)-5-[(~{E})-3-phosphonoprop-1-enyl]pyrimidin-1-yl]-2-phenyl-4~{a},6,7,7~{a}-tetrahydro-4~{H}-furo[3,2-d][1,3]dioxin-2-yl]phosphonic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H22 N2 O11 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-03-23 
_chem_comp.pdbx_modified_date                    2018-07-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        516.332 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     O84 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6G2M 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
O84 OP2   O1  O 0 1 N N N -6.211 26.205 32.409 -5.477 2.528  -0.914 OP2   O84 1  
O84 P     P1  P 0 1 N N N -5.782 24.842 32.049 -4.372 2.221  0.215  P     O84 2  
O84 OP1   O2  O 0 1 N N N -6.919 23.970 31.662 -3.564 3.437  0.459  OP1   O84 3  
O84 OP3   O3  O 0 1 N N N -5.013 24.182 33.218 -5.106 1.782  1.579  OP3   O84 4  
O84 CAB   C1  C 0 1 N N R -4.561 24.828 30.704 -3.283 0.872  -0.350 CAB   O84 5  
O84 C2    C2  C 0 1 Y N N -4.313 23.400 30.282 -2.335 0.486  0.756  C2    O84 6  
O84 CAA   C3  C 0 1 Y N N -3.343 22.683 30.952 -0.992 0.795  0.654  CAA   O84 7  
O84 C9    C4  C 0 1 Y N N -3.113 21.338 30.600 -0.122 0.441  1.668  C9    O84 8  
O84 C10   C5  C 0 1 Y N N -3.879 20.736 29.608 -0.595 -0.222 2.784  C10   O84 9  
O84 C11   C6  C 0 1 Y N N -4.815 21.468 28.901 -1.939 -0.531 2.887  C11   O84 10 
O84 C12   C7  C 0 1 Y N N -5.040 22.801 29.261 -2.810 -0.171 1.875  C12   O84 11 
O84 "O3'" O4  O 0 1 N N N -5.018 25.468 29.495 -4.072 -0.257 -0.726 "O3'" O84 12 
O84 O7    O5  O 0 1 N N N -3.362 25.417 31.068 -2.540 1.300  -1.498 O7    O84 13 
O84 "C5'" C8  C 0 1 N N N -3.242 26.806 31.294 -1.622 0.309  -1.960 "C5'" O84 14 
O84 "C4'" C9  C 0 1 N N R -3.948 27.554 30.170 -2.373 -0.967 -2.354 "C4'" O84 15 
O84 "O4'" O6  O 0 1 N N N -2.978 27.587 29.110 -1.406 -2.040 -2.369 "O4'" O84 16 
O84 "C3'" C10 C 0 1 N N R -5.166 26.896 29.539 -3.361 -1.365 -1.238 "C3'" O84 17 
O84 "C2'" C11 C 0 1 N N N -5.137 27.376 28.096 -2.406 -1.969 -0.183 "C2'" O84 18 
O84 "C1'" C12 C 0 1 N N R -3.623 27.718 27.899 -1.342 -2.651 -1.073 "C1'" O84 19 
O84 N9    N1  N 0 1 N N N -3.019 26.890 26.852 -0.010 -2.454 -0.496 N9    O84 20 
O84 C4    C13 C 0 1 N N N -3.394 25.557 26.672 0.835  -1.543 -1.061 C4    O84 21 
O84 C8    C14 C 0 1 N N N -2.086 27.434 26.026 0.352  -3.168 0.582  C8    O84 22 
O84 O2    O7  O 0 1 N N N -1.602 28.599 26.221 -0.437 -3.965 1.054  O2    O84 23 
O84 N1    N2  N 0 1 N N N -1.646 26.699 24.962 1.560  -3.029 1.154  N1    O84 24 
O84 C6    C15 C 0 1 N N N -2.130 25.433 24.692 2.455  -2.153 0.651  C6    O84 25 
O84 O6    O8  O 0 1 N N N -1.687 24.965 23.624 3.552  -2.022 1.164  O6    O84 26 
O84 C5    C16 C 0 1 N N N -2.976 24.803 25.645 2.077  -1.356 -0.525 C5    O84 27 
O84 C17   C17 C 0 1 N N N -3.513 23.425 25.590 3.018  -0.383 -1.115 C17   O84 28 
O84 C18   C18 C 0 1 N N N -3.542 22.585 24.652 4.257  -0.291 -0.648 C18   O84 29 
O84 C19   C19 C 0 1 N N N -4.174 21.251 24.783 5.251  0.617  -1.325 C19   O84 30 
O84 P2    P2  P 0 1 N N N -3.193 20.038 23.989 5.944  1.778  -0.102 P2    O84 31 
O84 O11   O9  O 0 1 N N N -2.920 20.475 22.521 6.515  1.017  1.032  O11   O84 32 
O84 O9    O10 O 0 1 N N N -4.034 18.773 23.936 7.100  2.659  -0.793 O9    O84 33 
O84 O10   O11 O 0 1 N N N -1.901 19.831 24.741 4.778  2.749  0.437  O10   O84 34 
O84 H1    H1  H 0 1 N N N -7.155 26.273 32.325 -6.092 3.237  -0.681 H1    O84 35 
O84 H2    H2  H 0 1 N N N -5.427 23.358 33.445 -5.654 0.990  1.494  H2    O84 36 
O84 H3    H3  H 0 1 N N N -2.766 23.148 31.738 -0.622 1.313  -0.219 H3    O84 37 
O84 H4    H4  H 0 1 N N N -2.341 20.774 31.102 0.928  0.682  1.587  H4    O84 38 
O84 H5    H5  H 0 1 N N N -3.742 19.688 29.388 0.084  -0.499 3.577  H5    O84 39 
O84 H6    H6  H 0 1 N N N -5.363 21.019 28.086 -2.310 -1.044 3.761  H6    O84 40 
O84 H7    H7  H 0 1 N N N -5.791 23.374 28.737 -3.860 -0.412 1.956  H7    O84 41 
O84 H8    H8  H 0 1 N N N -2.178 27.086 31.312 -1.083 0.693  -2.827 H8    O84 42 
O84 H9    H9  H 0 1 N N N -3.706 27.064 32.257 -0.911 0.077  -1.167 H9    O84 43 
O84 H10   H10 H 0 1 N N N -4.204 28.571 30.503 -2.864 -0.858 -3.321 H10   O84 44 
O84 H11   H11 H 0 1 N N N -6.092 27.208 30.043 -4.058 -2.117 -1.607 H11   O84 45 
O84 H12   H12 H 0 1 N N N -5.769 28.265 27.958 -1.958 -1.187 0.431  H12   O84 46 
O84 H13   H13 H 0 1 N N N -5.461 26.584 27.405 -2.923 -2.701 0.438  H13   O84 47 
O84 H14   H14 H 0 1 N N N -3.573 28.768 27.574 -1.556 -3.716 -1.156 H14   O84 48 
O84 H15   H15 H 0 1 N N N -4.056 25.110 27.399 0.524  -0.975 -1.926 H15   O84 49 
O84 H16   H16 H 0 1 N N N -0.951 27.090 24.359 1.790  -3.561 1.931  H16   O84 50 
O84 H17   H17 H 0 1 N N N -3.956 23.081 26.513 2.698  0.254  -1.927 H17   O84 51 
O84 H18   H18 H 0 1 N N N -3.086 22.849 23.709 4.552  -0.866 0.216  H18   O84 52 
O84 H19   H19 H 0 1 N N N -5.171 21.274 24.318 6.055  0.019  -1.754 H19   O84 53 
O84 H20   H20 H 0 1 N N N -4.272 20.998 25.849 4.753  1.177  -2.116 H20   O84 54 
O84 H21   H21 H 0 1 N N N -4.200 18.540 23.030 7.514  3.300  -0.199 H21   O84 55 
O84 H22   H22 H 0 1 N N N -1.167 20.010 24.165 4.358  3.280  -0.254 H22   O84 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
O84 O11   P2    DOUB N N 1  
O84 O6    C6    DOUB N N 2  
O84 O9    P2    SING N N 3  
O84 P2    O10   SING N N 4  
O84 P2    C19   SING N N 5  
O84 C18   C19   SING N N 6  
O84 C18   C17   DOUB N E 7  
O84 C6    N1    SING N N 8  
O84 C6    C5    SING N N 9  
O84 N1    C8    SING N N 10 
O84 C17   C5    SING N N 11 
O84 C5    C4    DOUB N N 12 
O84 C8    O2    DOUB N N 13 
O84 C8    N9    SING N N 14 
O84 C4    N9    SING N N 15 
O84 N9    "C1'" SING N N 16 
O84 "C1'" "C2'" SING N N 17 
O84 "C1'" "O4'" SING N N 18 
O84 "C2'" "C3'" SING N N 19 
O84 C11   C12   DOUB Y N 20 
O84 C11   C10   SING Y N 21 
O84 "O4'" "C4'" SING N N 22 
O84 C12   C2    SING Y N 23 
O84 "O3'" "C3'" SING N N 24 
O84 "O3'" CAB   SING N N 25 
O84 "C3'" "C4'" SING N N 26 
O84 C10   C9    DOUB Y N 27 
O84 "C4'" "C5'" SING N N 28 
O84 C2    CAB   SING N N 29 
O84 C2    CAA   DOUB Y N 30 
O84 C9    CAA   SING Y N 31 
O84 CAB   O7    SING N N 32 
O84 CAB   P     SING N N 33 
O84 O7    "C5'" SING N N 34 
O84 OP1   P     DOUB N N 35 
O84 P     OP2   SING N N 36 
O84 P     OP3   SING N N 37 
O84 OP2   H1    SING N N 38 
O84 OP3   H2    SING N N 39 
O84 CAA   H3    SING N N 40 
O84 C9    H4    SING N N 41 
O84 C10   H5    SING N N 42 
O84 C11   H6    SING N N 43 
O84 C12   H7    SING N N 44 
O84 "C5'" H8    SING N N 45 
O84 "C5'" H9    SING N N 46 
O84 "C4'" H10   SING N N 47 
O84 "C3'" H11   SING N N 48 
O84 "C2'" H12   SING N N 49 
O84 "C2'" H13   SING N N 50 
O84 "C1'" H14   SING N N 51 
O84 C4    H15   SING N N 52 
O84 N1    H16   SING N N 53 
O84 C17   H17   SING N N 54 
O84 C18   H18   SING N N 55 
O84 C19   H19   SING N N 56 
O84 C19   H20   SING N N 57 
O84 O9    H21   SING N N 58 
O84 O10   H22   SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
O84 InChI            InChI                1.03  
"InChI=1S/C19H22N2O11P2/c22-17-12(5-4-8-33(24,25)26)10-21(18(23)20-17)16-9-14-15(31-16)11-30-19(32-14,34(27,28)29)13-6-2-1-3-7-13/h1-7,10,14-16H,8-9,11H2,(H,20,22,23)(H2,24,25,26)(H2,27,28,29)/b5-4+/t14-,15-,16-,19-/m1/s1" 
O84 InChIKey         InChI                1.03  TZXVMSWLUKAZDT-PDBOZARJSA-N 
O84 SMILES_CANONICAL CACTVS               3.385 "O[P](O)(=O)C\C=C\C1=CN([C@H]2C[C@H]3O[C@](OC[C@H]3O2)(c4ccccc4)[P](O)(O)=O)C(=O)NC1=O" 
O84 SMILES           CACTVS               3.385 "O[P](O)(=O)CC=CC1=CN([CH]2C[CH]3O[C](OC[CH]3O2)(c4ccccc4)[P](O)(O)=O)C(=O)NC1=O" 
O84 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)[C@]2(OC[C@@H]3[C@H](O2)C[C@@H](O3)N4C=C(C(=O)NC4=O)/C=C/CP(=O)(O)O)P(=O)(O)O" 
O84 SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)C2(OCC3C(O2)CC(O3)N4C=C(C(=O)NC4=O)C=CCP(=O)(O)O)P(=O)(O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
O84 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},4~{a}~{R},6~{R},7~{a}~{R})-6-[2,4-bis(oxidanylidene)-5-[(~{E})-3-phosphonoprop-1-enyl]pyrimidin-1-yl]-2-phenyl-4~{a},6,7,7~{a}-tetrahydro-4~{H}-furo[3,2-d][1,3]dioxin-2-yl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
O84 "Create component" 2018-03-23 EBI  
O84 "Initial release"  2018-07-11 RCSB 
# 
