data_O34
#

_chem_comp.id                                   O34
_chem_comp.name                                 yersiniabactin
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H27 N3 O4 S3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;(4S)-2-[(1S)-1-hydroxy-1-{(2R,4R)-2-[(4R)-2-(2-hydroxyphenyl)-4,5-dihydro-1,3-thiazol-4-yl]-1,3-thiazolidin-4-yl}-2-met
hylpropan-2-yl]-4-methyl-4,5-dihydro-1,3-thiazole-4-carboxylic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-06-05
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       481.652
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    O34
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6P6J
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
O34  N1   N1   N  0  1  N  N  N  132.353  147.795  153.027  -2.416   0.350  -0.087  N1A   O34   1  
O34  N2   N2   N  0  1  N  N  N  133.581  147.611  150.624  -0.155  -0.912  -1.253  N2A   O34   2  
O34  N3   N3   N  0  1  N  N  N  136.326  147.448  151.840   2.601   0.230   0.822  N3A   O34   3  
O34  O1   O1   O  0  1  N  N  N  134.595  148.094  154.572  -3.349  -1.751   1.160  O1A   O34   4  
O34  O2   O2   O  0  1  N  N  N  134.583  149.608  152.004   3.044  -2.697  -1.803  O2A   O34   5  
O34  O3   O3   O  0  1  N  N  N  134.615  145.777  152.812   2.726   1.762   3.132  O3A   O34   6  
O34  O4   O4   O  0  1  N  N  N  135.894  143.992  152.524   4.886   1.990   2.727  O4A   O34   7  
O34  S1   S1   S  0  1  N  N  N  129.974  147.823  153.999  -3.729   2.327  -0.919  S1A   O34   8  
O34  S2   S2   S  0  1  N  N  N  131.506  148.298  149.117   0.796   1.260  -2.391  S2A   O34   9  
O34  S3   S3   S  0  1  N  N  N  138.073  147.121  149.979   4.590  -0.970  -0.125  S3A   O34  10  
O34  C1   C1   C  0  1  Y  N  N  133.792  147.773  155.557  -4.594  -1.217   1.074  C1A   O34  11  
O34  C2   C2   C  0  1  Y  N  N  134.347  147.622  156.857  -5.680  -1.896   1.606  C2A   O34  12  
O34  C3   C3   C  0  1  Y  N  N  133.545  147.317  157.934  -6.947  -1.352   1.518  C3A   O34  13  
O34  C4   C4   C  0  1  Y  N  N  132.163  147.168  157.788  -7.141  -0.127   0.900  C4A   O34  14  
O34  C5   C5   C  0  1  Y  N  N  131.588  147.329  156.544  -6.071   0.560   0.367  C5A   O34  15  
O34  C6   C6   C  0  1  Y  N  N  132.396  147.593  155.437  -4.786   0.023   0.454  C6A   O34  16  
O34  C7   C7   C  0  1  N  N  N  131.752  147.719  154.135  -3.634   0.758  -0.111  C7A   O34  17  
O34  C8   C8   C  0  1  N  N  N  130.102  147.572  152.209  -1.945   2.458  -1.267  C8A   O34  18  
O34  C9   C9   C  0  1  N  N  R  131.501  148.087  151.866  -1.373   1.161  -0.675  C9A   O34  19  
O34  C10  C10  C  0  1  N  N  R  132.110  147.474  150.609  -0.685   0.364  -1.785  C10A  O34  20  
O34  C11  C11  C  0  1  N  N  N  132.800  149.552  149.351   2.004  -0.075  -2.024  C11A  O34  21  
O34  C12  C12  C  0  1  N  N  R  134.037  148.777  149.805   1.069  -1.314  -1.972  C12A  O34  22  
O34  C13  C13  C  0  1  N  N  S  134.961  149.687  150.667   1.760  -2.457  -1.224  C13A  O34  23  
O34  C14  C14  C  0  1  N  N  N  136.481  149.442  150.452   1.927  -2.075   0.248  C14A  O34  24  
O34  C15  C15  C  0  1  N  N  N  136.858  149.757  148.999   0.571  -1.664   0.825  C15A  O34  25  
O34  C16  C16  C  0  1  N  N  N  137.276  150.366  151.400   2.471  -3.274   1.027  C16A  O34  26  
O34  C17  C17  C  0  1  N  N  N  136.855  148.033  150.827   2.891  -0.922   0.361  C17A  O34  27  
O34  C18  C18  C  0  1  N  N  N  137.674  145.632  150.948   4.958   0.752   0.342  C18A  O34  28  
O34  C19  C19  C  0  1  N  N  S  136.884  146.129  152.154   3.612   1.262   0.883  C19A  O34  29  
O34  C20  C20  C  0  1  N  N  N  137.786  146.274  153.391   3.157   2.461   0.048  C20A  O34  30  
O34  C21  C21  C  0  1  N  N  N  135.711  145.204  152.505   3.788   1.698   2.315  C21A  O34  31  
O34  H1   H1   H  0  1  N  N  N  133.988  146.776  150.254  -0.854  -1.639  -1.294  H1    O34  32  
O34  H5   H5   H  0  1  N  N  N  135.486  148.158  154.897  -3.110  -2.315   0.412  H5    O34  33  
O34  H6   H6   H  0  1  N  N  N  135.149  150.164  152.527   3.638  -1.934  -1.772  H6    O34  34  
O34  H7   H7   H  0  1  N  N  N  133.972  145.122  153.055   2.888   2.047   4.042  H7    O34  35  
O34  H8   H8   H  0  1  N  N  N  135.410  147.748  157.002  -5.536  -2.851   2.089  H8    O34  36  
O34  H9   H9   H  0  1  N  N  N  133.992  147.191  158.909  -7.790  -1.884   1.932  H9    O34  37  
O34  H10  H10  H  0  1  N  N  N  131.549  146.928  158.644  -8.135   0.291   0.836  H10   O34  38  
O34  H11  H11  H  0  1  N  N  N  130.517  147.251  156.427  -6.227   1.514  -0.114  H11   O34  39  
O34  H12  H12  H  0  1  N  N  N  129.331  148.148  151.677  -1.765   2.503  -2.341  H12   O34  40  
O34  H13  H13  H  0  1  N  N  N  130.004  146.506  151.955  -1.520   3.331  -0.770  H13   O34  41  
O34  H14  H14  H  0  1  N  N  N  131.444  149.177  151.727  -0.640   1.410   0.091  H14   O34  42  
O34  H15  H15  H  0  1  N  N  N  131.819  146.416  150.527  -1.377   0.176  -2.606  H15   O34  43  
O34  H16  H16  H  0  1  N  N  N  133.001  150.079  148.407   2.739  -0.170  -2.824  H16   O34  44  
O34  H17  H17  H  0  1  N  N  N  132.497  150.279  150.119   2.492   0.090  -1.063  H17   O34  45  
O34  H18  H18  H  0  1  N  N  N  134.595  148.424  148.925   0.817  -1.631  -2.984  H18   O34  46  
O34  H19  H19  H  0  1  N  N  N  134.772  150.715  150.325   1.153  -3.359  -1.299  H19   O34  47  
O34  H20  H20  H  0  1  N  N  N  137.934  149.582  148.853  -0.203  -2.331   0.445  H20   O34  48  
O34  H21  H21  H  0  1  N  N  N  136.285  149.106  148.322   0.604  -1.729   1.913  H21   O34  49  
O34  H22  H22  H  0  1  N  N  N  136.625  150.809  148.780   0.345  -0.640   0.529  H22   O34  50  
O34  H23  H23  H  0  1  N  N  N  137.007  150.141  152.443   3.437  -3.566   0.615  H23   O34  51  
O34  H24  H24  H  0  1  N  N  N  138.354  150.199  151.256   2.590  -3.002   2.076  H24   O34  52  
O34  H25  H25  H  0  1  N  N  N  137.034  151.416  151.177   1.774  -4.107   0.945  H25   O34  53  
O34  H27  H27  H  0  1  N  N  N  137.066  144.936  150.351   5.722   0.786   1.118  H27   O34  54  
O34  H28  H28  H  0  1  N  N  N  138.595  145.127  151.274   5.266   1.330  -0.529  H28   O34  55  
O34  H29  H29  H  0  1  N  N  N  137.188  146.633  154.241   2.231   2.861   0.461  H29   O34  56  
O34  H30  H30  H  0  1  N  N  N  138.227  145.297  153.640   3.927   3.232   0.070  H30   O34  57  
O34  H31  H31  H  0  1  N  N  N  138.589  146.995  153.177   2.988   2.144  -0.981  H31   O34  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
O34  C15  C14  SING  N  N   1  
O34  S2   C11  SING  N  N   2  
O34  S2   C10  SING  N  N   3  
O34  C11  C12  SING  N  N   4  
O34  C12  N2   SING  N  N   5  
O34  C12  C13  SING  N  N   6  
O34  S3   C17  SING  N  N   7  
O34  S3   C18  SING  N  N   8  
O34  C14  C13  SING  N  N   9  
O34  C14  C17  SING  N  N  10  
O34  C14  C16  SING  N  N  11  
O34  C10  N2   SING  N  N  12  
O34  C10  C9   SING  N  N  13  
O34  C13  O2   SING  N  N  14  
O34  C17  N3   DOUB  N  N  15  
O34  C18  C19  SING  N  N  16  
O34  N3   C19  SING  N  N  17  
O34  C9   C8   SING  N  N  18  
O34  C9   N1   SING  N  N  19  
O34  C19  C21  SING  N  N  20  
O34  C19  C20  SING  N  N  21  
O34  C8   S1   SING  N  N  22  
O34  C21  O4   DOUB  N  N  23  
O34  C21  O3   SING  N  N  24  
O34  N1   C7   DOUB  N  N  25  
O34  S1   C7   SING  N  N  26  
O34  C7   C6   SING  N  N  27  
O34  O1   C1   SING  N  N  28  
O34  C6   C1   DOUB  Y  N  29  
O34  C6   C5   SING  Y  N  30  
O34  C1   C2   SING  Y  N  31  
O34  C5   C4   DOUB  Y  N  32  
O34  C2   C3   DOUB  Y  N  33  
O34  C4   C3   SING  Y  N  34  
O34  N2   H1   SING  N  N  35  
O34  O1   H5   SING  N  N  36  
O34  O2   H6   SING  N  N  37  
O34  O3   H7   SING  N  N  38  
O34  C2   H8   SING  N  N  39  
O34  C3   H9   SING  N  N  40  
O34  C4   H10  SING  N  N  41  
O34  C5   H11  SING  N  N  42  
O34  C8   H12  SING  N  N  43  
O34  C8   H13  SING  N  N  44  
O34  C9   H14  SING  N  N  45  
O34  C10  H15  SING  N  N  46  
O34  C11  H16  SING  N  N  47  
O34  C11  H17  SING  N  N  48  
O34  C12  H18  SING  N  N  49  
O34  C13  H19  SING  N  N  50  
O34  C15  H20  SING  N  N  51  
O34  C15  H21  SING  N  N  52  
O34  C15  H22  SING  N  N  53  
O34  C16  H23  SING  N  N  54  
O34  C16  H24  SING  N  N  55  
O34  C16  H25  SING  N  N  56  
O34  C18  H27  SING  N  N  57  
O34  C18  H28  SING  N  N  58  
O34  C20  H29  SING  N  N  59  
O34  C20  H30  SING  N  N  60  
O34  C20  H31  SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
O34  SMILES            ACDLabs               12.01  "N1=C(SCC1C2NC(CS2)C(O)C(C3=NC(CS3)(C(O)=O)C)(C)C)c4c(O)cccc4"  
O34  InChI             InChI                 1.03   "InChI=1S/C21H27N3O4S3/c1-20(2,18-24-21(3,10-31-18)19(27)28)15(26)12-8-30-17(22-12)13-9-29-16(23-13)11-6-4-5-7-14(11)25/h4-7,12-13,15,17,22,25-26H,8-10H2,1-3H3,(H,27,28)/t12-,13+,15+,17+,21+/m0/s1"  
O34  InChIKey          InChI                 1.03   JHYVWAMMAMCUIR-NIJJZIDKSA-N  
O34  SMILES_CANONICAL  CACTVS                3.385  "CC(C)([C@H](O)[C@@H]1CS[C@@H](N1)[C@H]2CSC(=N2)c3ccccc3O)C4=N[C@](C)(CS4)C(O)=O"  
O34  SMILES            CACTVS                3.385  "CC(C)([CH](O)[CH]1CS[CH](N1)[CH]2CSC(=N2)c3ccccc3O)C4=N[C](C)(CS4)C(O)=O"  
O34  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@]1(CSC(=N1)C(C)(C)[C@@H]([C@@H]2CS[C@@H](N2)[C@H]3CSC(=N3)c4ccccc4O)O)C(=O)O"  
O34  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1(CSC(=N1)C(C)(C)C(C2CSC(N2)C3CSC(=N3)c4ccccc4O)O)C(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
O34  "SYSTEMATIC NAME"  ACDLabs               12.01  "(4S)-2-[(1S)-1-hydroxy-1-{(2R,4R)-2-[(4R)-2-(2-hydroxyphenyl)-4,5-dihydro-1,3-thiazol-4-yl]-1,3-thiazolidin-4-yl}-2-methylpropan-2-yl]-4-methyl-4,5-dihydro-1,3-thiazole-4-carboxylic acid"  
O34  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(4~{S})-2-[(1~{S})-1-[(2~{R},4~{R})-2-[(4~{R})-2-(2-hydroxyphenyl)-4,5-dihydro-1,3-thiazol-4-yl]-1,3-thiazolidin-4-yl]-2-methyl-1-oxidanyl-propan-2-yl]-4-methyl-5~{H}-1,3-thiazole-4-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
O34  "Create component"  2019-06-05  RCSB  
O34  "Initial release"   2020-03-04  RCSB  
O34  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     O34
_pdbx_chem_comp_synonyms.name        "(4S)-2-[(1S)-1-hydroxy-1-{(2R,4R)-2-[(4R)-2-(2-hydroxyphenyl)-4,5-dihydro-1,3-thiazol-4-yl]-1,3-thiazolidin-4-yl}-2-methylpropan-2-yl]-4-methyl-4,5-dihydro-1,3-thiazole-4-carboxylic acid"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
