data_NQ4
#

_chem_comp.id                                   NQ4
_chem_comp.name                                 "[[(2~{R},5~{S})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H16 N3 O12 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-05-23
_chem_comp.pdbx_modified_date                   2019-07-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       451.158
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NQ4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6P1X
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NQ4  C1   C1   C  0  1  N  N  N  -42.554  -3.875  -30.037  -4.915   2.487   0.737  C1   NQ4   1  
NQ4  C2   C2   C  0  1  N  N  N  -42.351  -3.511  -28.761  -4.284   1.403   0.228  C2   NQ4   2  
NQ4  C3   C3   C  0  1  N  N  S  -40.866  -2.713  -26.937  -4.341  -0.721  -0.986  C3   NQ4   3  
NQ4  C4   C4   C  0  1  N  N  N  -41.229  -3.790  -25.926  -4.826  -2.011  -0.277  C4   NQ4   4  
NQ4  C5   C5   C  0  1  N  N  N  -42.508  -3.250  -25.263  -3.634  -2.973  -0.501  C5   NQ4   5  
NQ4  C6   C6   C  0  1  N  N  R  -42.364  -1.744  -25.420  -2.445  -2.037  -0.796  C6   NQ4   6  
NQ4  N    N1   N  0  1  N  N  N  -41.560  -4.218  -32.187  -6.978   3.694   1.085  N    NQ4   7  
NQ4  C    C7   C  0  1  N  N  N  -41.429  -3.859  -30.914  -6.312   2.603   0.578  C    NQ4   8  
NQ4  O    O1   O  0  1  N  N  N  -43.452   0.382  -25.668  -0.189  -1.489  -0.125  O    NQ4   9  
NQ4  C7   C8   C  0  1  N  N  N  -43.681  -1.029  -25.473  -1.330  -2.275   0.224  C7   NQ4  10  
NQ4  C8   C9   C  0  1  N  N  N  -40.014  -3.135  -29.188  -6.342   0.598  -0.570  C8   NQ4  11  
NQ4  N1   N2   N  0  1  N  N  N  -41.105  -3.136  -28.318  -5.011   0.456  -0.430  N1   NQ4  12  
NQ4  N2   N3   N  0  1  N  N  N  -40.209  -3.496  -30.485  -6.979   1.653  -0.065  N2   NQ4  13  
NQ4  O1   O2   O  0  1  N  N  N  -45.477   1.332  -24.440   0.889  -0.876   2.193  O1   NQ4  14  
NQ4  O10  O3   O  0  1  N  N  N  -41.688  -1.588  -26.682  -2.928  -0.688  -0.693  O10  NQ4  15  
NQ4  O11  O4   O  0  1  N  N  N  -38.903  -2.838  -28.746  -6.977  -0.260  -1.161  O11  NQ4  16  
NQ4  O2   O5   O  0  1  N  N  N  -44.086   2.855  -25.995   1.667  -2.880   0.870  O2   NQ4  17  
NQ4  O3   O6   O  0  1  N  N  N  -45.412   0.919  -26.932   2.283  -0.599  -0.019  O3   NQ4  18  
NQ4  O4   O7   O  0  1  N  N  N  -46.941  -0.849  -26.002   4.530  -1.711  -0.810  O4   NQ4  19  
NQ4  O5   O8   O  0  1  N  N  N  -46.939  -0.252  -28.480   4.324  -0.637   1.465  O5   NQ4  20  
NQ4  O6   O9   O  0  1  N  N  N  -47.840   1.408  -26.809   4.380   0.900  -0.537  O6   NQ4  21  
NQ4  O7   O10  O  0  1  N  N  N  -49.326   1.242  -24.648   5.935   2.374   0.987  O7   NQ4  22  
NQ4  O8   O11  O  0  1  N  N  N  -49.749   2.974  -26.469   6.894   0.799  -0.737  O8   NQ4  23  
NQ4  O9   O12  O  0  1  N  N  N  -47.775   3.231  -25.020   5.751   2.882  -1.586  O9   NQ4  24  
NQ4  P    P1   P  0  1  N  N  N  -44.640   1.462  -25.654   1.173  -1.491   0.733  P    NQ4  25  
NQ4  P1   P2   P  0  1  N  N  N  -46.819   0.193  -27.040   3.888  -0.514   0.056  P1   NQ4  26  
NQ4  P2   P3   P  0  1  N  N  N  -48.691   2.181  -25.678   5.765   1.719  -0.474  P2   NQ4  27  
NQ4  H1   H1   H  0  1  N  N  N  -43.533  -4.169  -30.387  -4.359   3.250   1.262  H1   NQ4  28  
NQ4  H2   H2   H  0  1  N  N  N  -43.181  -3.513  -28.070  -3.216   1.290   0.340  H2   NQ4  29  
NQ4  H3   H3   H  0  1  N  N  N  -39.806  -2.448  -26.810  -4.508  -0.788  -2.061  H3   NQ4  30  
NQ4  H4   H4   H  0  1  N  N  N  -41.422  -4.750  -26.427  -4.989  -1.834   0.786  H4   NQ4  31  
NQ4  H5   H5   H  0  1  N  N  N  -40.427  -3.919  -25.184  -5.731  -2.397  -0.748  H5   NQ4  32  
NQ4  H6   H6   H  0  1  N  N  N  -43.407  -3.617  -25.780  -3.443  -3.560   0.397  H6   NQ4  33  
NQ4  H7   H7   H  0  1  N  N  N  -42.554  -3.534  -24.201  -3.826  -3.628  -1.350  H7   NQ4  34  
NQ4  H8   H8   H  0  1  N  N  N  -41.753  -1.343  -24.598  -2.070  -2.221  -1.803  H8   NQ4  35  
NQ4  H9   H9   H  0  1  N  N  N  -40.764  -4.212  -32.793  -7.939   3.770   0.974  H9   NQ4  36  
NQ4  H10  H10  H  0  1  N  N  N  -42.454  -4.494  -32.539  -6.488   4.386   1.555  H10  NQ4  37  
NQ4  H11  H11  H  0  1  N  N  N  -44.222  -1.186  -24.528  -1.679  -1.988   1.216  H11  NQ4  38  
NQ4  H12  H12  H  0  1  N  N  N  -44.279  -1.423  -26.308  -1.058  -3.330   0.226  H12  NQ4  39  
NQ4  H13  H13  H  0  1  N  N  N  -45.558   2.179  -24.018   0.562   0.034   2.179  H13  NQ4  40  
NQ4  H14  H14  H  0  1  N  N  N  -47.085  -1.692  -26.415   4.287  -1.693  -1.746  H14  NQ4  41  
NQ4  H15  H15  H  0  1  N  N  N  -50.272   1.322  -24.686   5.229   2.989   1.226  H15  NQ4  42  
NQ4  H16  H16  H  0  1  N  N  N  -48.073   4.102  -25.253   6.556   3.418  -1.606  H16  NQ4  43  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NQ4  N    C    SING  N  N   1  
NQ4  C    N2   DOUB  N  N   2  
NQ4  C    C1   SING  N  N   3  
NQ4  N2   C8   SING  N  N   4  
NQ4  C1   C2   DOUB  N  N   5  
NQ4  C8   O11  DOUB  N  N   6  
NQ4  C8   N1   SING  N  N   7  
NQ4  C2   N1   SING  N  N   8  
NQ4  O5   P1   DOUB  N  N   9  
NQ4  N1   C3   SING  N  N  10  
NQ4  P1   O3   SING  N  N  11  
NQ4  P1   O6   SING  N  N  12  
NQ4  P1   O4   SING  N  N  13  
NQ4  C3   O10  SING  N  N  14  
NQ4  C3   C4   SING  N  N  15  
NQ4  O3   P    SING  N  N  16  
NQ4  O6   P2   SING  N  N  17  
NQ4  O10  C6   SING  N  N  18  
NQ4  O8   P2   DOUB  N  N  19  
NQ4  O2   P    DOUB  N  N  20  
NQ4  C4   C5   SING  N  N  21  
NQ4  P2   O9   SING  N  N  22  
NQ4  P2   O7   SING  N  N  23  
NQ4  O    P    SING  N  N  24  
NQ4  O    C7   SING  N  N  25  
NQ4  P    O1   SING  N  N  26  
NQ4  C7   C6   SING  N  N  27  
NQ4  C6   C5   SING  N  N  28  
NQ4  C1   H1   SING  N  N  29  
NQ4  C2   H2   SING  N  N  30  
NQ4  C3   H3   SING  N  N  31  
NQ4  C4   H4   SING  N  N  32  
NQ4  C4   H5   SING  N  N  33  
NQ4  C5   H6   SING  N  N  34  
NQ4  C5   H7   SING  N  N  35  
NQ4  C6   H8   SING  N  N  36  
NQ4  N    H9   SING  N  N  37  
NQ4  N    H10  SING  N  N  38  
NQ4  C7   H11  SING  N  N  39  
NQ4  C7   H12  SING  N  N  40  
NQ4  O1   H13  SING  N  N  41  
NQ4  O4   H14  SING  N  N  42  
NQ4  O7   H15  SING  N  N  43  
NQ4  O9   H16  SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NQ4  InChI             InChI                 1.03   "InChI=1S/C9H16N3O12P3/c10-7-3-4-12(9(13)11-7)8-2-1-6(22-8)5-21-26(17,18)24-27(19,20)23-25(14,15)16/h3-4,6,8H,1-2,5H2,(H,17,18)(H,19,20)(H2,10,11,13)(H2,14,15,16)/t6-,8+/m1/s1"  
NQ4  InChIKey          InChI                 1.03   ARLKCWCREKRROD-SVRRBLITSA-N  
NQ4  SMILES_CANONICAL  CACTVS                3.385  "NC1=NC(=O)N(C=C1)[C@@H]2CC[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2"  
NQ4  SMILES            CACTVS                3.385  "NC1=NC(=O)N(C=C1)[CH]2CC[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2"  
NQ4  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1C[C@H](O[C@H]1COP(=O)(O)OP(=O)(O)OP(=O)(O)O)N2C=CC(=NC2=O)N"  
NQ4  SMILES            "OpenEye OEToolkits"  2.0.7  "C1CC(OC1COP(=O)(O)OP(=O)(O)OP(=O)(O)O)N2C=CC(=NC2=O)N"  
#
_pdbx_chem_comp_identifier.comp_id          NQ4
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[[(2~{R},5~{S})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NQ4  "Create component"  2019-05-23  RCSB  
NQ4  "Initial release"   2019-07-24  RCSB  
##
