data_NA4
# 
_chem_comp.id                                    NA4 
_chem_comp.name                                  "4-[5-(2-CARBOXY-1-FORMYL-ETHYLCARBAMOYL)-PYRIDIN-3-YL]-BENZOIC ACID" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H14 N2 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2003-11-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        342.303 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     NA4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
NA4 C7  C7  C 0 1 Y N N N N N -44.312 38.487 89.851 -0.280 -0.098 0.135  C7  NA4 1  
NA4 C8  C8  C 0 1 Y N N N N N -44.258 39.414 90.877 -1.303 0.662  0.703  C8  NA4 2  
NA4 C9  C9  C 0 1 Y N N N N N -45.392 39.669 91.609 -0.974 1.677  1.601  C9  NA4 3  
NA4 N2  N2  N 0 1 Y N N N N N -46.561 39.061 91.385 0.281  1.918  1.920  N2  NA4 4  
NA4 C10 C10 C 0 1 Y N N N N N -46.619 38.156 90.385 1.277  1.221  1.412  C10 NA4 5  
NA4 C6  C6  C 0 1 Y N N N N N -45.519 37.830 89.593 1.038  0.187  0.505  C6  NA4 6  
NA4 C5  C5  C 0 1 N N N N N N -45.596 36.769 88.602 2.161  -0.589 -0.061 C5  NA4 7  
NA4 O4  O4  O 0 1 N N N N N N -44.614 36.337 87.965 1.942  -1.488 -0.851 O4  NA4 8  
NA4 N1  N1  N 0 1 N N N N N N -46.834 36.316 88.425 3.428  -0.302 0.298  N1  NA4 9  
NA4 C3  C3  C 0 1 N N S N N N -47.157 35.209 87.534 4.541  -1.072 -0.263 C3  NA4 10 
NA4 C2  C2  C 0 1 N N N N N N -48.219 34.304 88.145 5.815  -0.225 -0.228 C2  NA4 11 
NA4 C4  C4  C 0 1 N N N N N N -47.271 35.274 86.007 4.747  -2.323 0.552  C4  NA4 12 
NA4 O3  O3  O 0 1 N N N N N N -46.400 34.790 85.300 4.038  -2.548 1.503  O3  NA4 13 
NA4 C1  C1  C 0 1 N N N N N N -47.836 33.809 89.500 5.653  0.964  -1.140 C1  NA4 14 
NA4 O2  O2  O 0 1 N N N N N N -48.738 33.340 90.205 4.624  1.118  -1.755 O2  NA4 15 
NA4 O1  O1  O 0 1 N N N N N N -46.644 33.878 89.848 6.652  1.851  -1.270 O1  NA4 16 
NA4 C15 C15 C 0 1 Y N N N N N -42.143 42.450 91.680 -4.485 -1.160 -0.116 C15 NA4 17 
NA4 C16 C16 C 0 1 Y N N N N N -43.243 41.631 91.400 -3.169 -0.914 0.205  C16 NA4 18 
NA4 C11 C11 C 0 1 Y N N N N N -43.056 40.291 91.083 -2.720 0.399  0.351  C11 NA4 19 
NA4 C12 C12 C 0 1 Y N N N N N -41.774 39.766 91.039 -3.600 1.464  0.160  C12 NA4 20 
NA4 C13 C13 C 0 1 Y N N N N N -40.671 40.581 91.319 -4.915 1.221  -0.167 C13 NA4 21 
NA4 C14 C14 C 0 1 Y N N N N N -40.859 41.926 91.633 -5.368 -0.093 -0.308 C14 NA4 22 
NA4 C17 C17 C 0 1 N N N N N N -39.747 42.771 91.893 -6.777 -0.355 -0.658 C17 NA4 23 
NA4 O5  O5  O 0 1 N N N N N N -38.605 42.268 91.799 -7.213 -1.623 -0.794 O5  NA4 24 
NA4 O6  O6  O 0 1 N N N N N N -39.974 43.969 92.193 -7.545 0.572  -0.824 O6  NA4 25 
NA4 H7  H7  H 0 1 N N N N N N -43.411 38.276 89.251 -0.500 -0.891 -0.565 H7  NA4 26 
NA4 H9  H9  H 0 1 N N N N N N -45.362 40.408 92.427 -1.760 2.273  2.042  H9  NA4 27 
NA4 H10 H10 H 0 1 N N N N N N -47.593 37.669 90.210 2.292  1.453  1.701  H10 NA4 28 
NA4 HN1 HN1 H 0 1 N N N N N N -47.535 36.817 88.972 3.602  0.415  0.928  HN1 NA4 29 
NA4 H3  H3  H 0 1 N N N N N N -46.114 34.815 87.503 4.313  -1.343 -1.293 H3  NA4 30 
NA4 H21 1H2 H 0 1 N N N N N N -48.465 33.457 87.463 6.660  -0.827 -0.562 H21 NA4 31 
NA4 H22 2H2 H 0 1 N N N N N N -49.212 34.810 88.168 5.995  0.120  0.790  H22 NA4 32 
NA4 H4  H4  H 0 1 N N N N N N -48.050 35.708 85.358 5.530  -3.018 0.285  H4  NA4 33 
NA4 HO1 HO1 H 0 1 N N N N N N -46.400 33.563 90.710 6.548  2.614  -1.855 HO1 NA4 34 
NA4 H15 H15 H 0 1 N N N N N N -42.288 43.512 91.939 -4.833 -2.176 -0.225 H15 NA4 35 
NA4 H16 H16 H 0 1 N N N N N N -44.265 42.045 91.429 -2.486 -1.737 0.353  H16 NA4 36 
NA4 H12 H12 H 0 1 N N N N N N -41.632 38.703 90.782 -3.250 2.480  0.270  H12 NA4 37 
NA4 H13 H13 H 0 1 N N N N N N -39.651 40.162 91.292 -5.596 2.046  -0.314 H13 NA4 38 
NA4 HO5 HO5 H 0 1 N N N N N N -37.861 42.833 91.973 -8.137 -1.795 -1.023 HO5 NA4 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
NA4 C7  C8  DOUB Y N 1  
NA4 C7  C6  SING Y N 2  
NA4 C7  H7  SING N N 3  
NA4 C8  C9  SING Y N 4  
NA4 C8  C11 SING Y N 5  
NA4 C9  N2  DOUB Y N 6  
NA4 C9  H9  SING N N 7  
NA4 N2  C10 SING Y N 8  
NA4 C10 C6  DOUB Y N 9  
NA4 C10 H10 SING N N 10 
NA4 C6  C5  SING N N 11 
NA4 C5  O4  DOUB N N 12 
NA4 C5  N1  SING N N 13 
NA4 N1  C3  SING N N 14 
NA4 N1  HN1 SING N N 15 
NA4 C3  C2  SING N N 16 
NA4 C3  C4  SING N N 17 
NA4 C3  H3  SING N N 18 
NA4 C2  C1  SING N N 19 
NA4 C2  H21 SING N N 20 
NA4 C2  H22 SING N N 21 
NA4 C4  O3  DOUB N N 22 
NA4 C4  H4  SING N N 23 
NA4 C1  O2  DOUB N N 24 
NA4 C1  O1  SING N N 25 
NA4 O1  HO1 SING N N 26 
NA4 C15 C16 DOUB Y N 27 
NA4 C15 C14 SING Y N 28 
NA4 C15 H15 SING N N 29 
NA4 C16 C11 SING Y N 30 
NA4 C16 H16 SING N N 31 
NA4 C11 C12 DOUB Y N 32 
NA4 C12 C13 SING Y N 33 
NA4 C12 H12 SING N N 34 
NA4 C13 C14 DOUB Y N 35 
NA4 C13 H13 SING N N 36 
NA4 C14 C17 SING N N 37 
NA4 C17 O5  SING N N 38 
NA4 C17 O6  DOUB N N 39 
NA4 O5  HO5 SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
NA4 SMILES           ACDLabs              10.04 "O=C(O)CC(C=O)NC(=O)c2cncc(c1ccc(C(=O)O)cc1)c2"                                                                                                        
NA4 SMILES_CANONICAL CACTVS               3.341 "OC(=O)C[C@H](NC(=O)c1cncc(c1)c2ccc(cc2)C(O)=O)C=O"                                                                                                    
NA4 SMILES           CACTVS               3.341 "OC(=O)C[CH](NC(=O)c1cncc(c1)c2ccc(cc2)C(O)=O)C=O"                                                                                                     
NA4 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1c2cc(cnc2)C(=O)N[C@@H](CC(=O)O)C=O)C(=O)O"                                                                                                   
NA4 SMILES           "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1c2cc(cnc2)C(=O)NC(CC(=O)O)C=O)C(=O)O"                                                                                                        
NA4 InChI            InChI                1.03  "InChI=1S/C17H14N2O6/c20-9-14(6-15(21)22)19-16(23)13-5-12(7-18-8-13)10-1-3-11(4-2-10)17(24)25/h1-5,7-9,14H,6H2,(H,19,23)(H,21,22)(H,24,25)/t14-/m0/s1" 
NA4 InChIKey         InChI                1.03  JNRAPROKLOUIRA-AWEZNQCLSA-N                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
NA4 "SYSTEMATIC NAME" ACDLabs              10.04 "4-(5-{[(1S)-2-carboxy-1-formylethyl]carbamoyl}pyridin-3-yl)benzoic acid"        
NA4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "4-[5-[[(2S)-4-hydroxy-1,4-dioxo-butan-2-yl]carbamoyl]pyridin-3-yl]benzoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
NA4 "Create component"     2003-11-19 RCSB 
NA4 "Modify aromatic_flag" 2011-06-04 RCSB 
NA4 "Modify descriptor"    2011-06-04 RCSB 
NA4 "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            NA4 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C4 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
