data_KV4
#

_chem_comp.id                                   KV4
_chem_comp.name                                 "5'-S-(4-{[(4'-chloro[1,1'-biphenyl]-4-yl)methyl]amino}butyl)-5'-thioadenosine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H31 Cl N6 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        SGC8158
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-01-18
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       555.091
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KV4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6NPG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KV4  C8   C1   C   0  1  N  N  S  33.048  17.446  68.385    5.171   2.122  -0.134  C8   KV4   1  
KV4  C13  C2   C   0  1  N  N  N  30.526  15.314  63.099   -2.353   0.556   1.820  C13  KV4   2  
KV4  C12  C3   C   0  1  N  N  N  30.025  16.748  63.264   -1.362   0.897   0.705  C12  KV4   3  
KV4  C11  C4   C   0  1  N  N  N  31.111  17.729  63.726    0.042   1.039   1.297  C11  KV4   4  
KV4  C10  C5   C   0  1  N  N  N  30.955  18.197  65.165    1.033   1.380   0.183  C10  KV4   5  
KV4  C9   C6   C   0  1  N  N  N  32.981  17.195  66.887    3.713   1.947  -0.565  C9   KV4   6  
KV4  C14  C7   C   0  1  N  N  N  29.880  14.645  60.836   -4.681   0.092   2.295  C14  KV4   7  
KV4  C2   C8   C   0  1  Y  N  N  35.491  21.126  69.832    8.901  -0.937  -0.039  C2   KV4   8  
KV4  C7   C9   C   0  1  N  N  S  31.809  18.013  69.084    6.024   2.566  -1.338  C7   KV4   9  
KV4  C6   C10  C   0  1  N  N  R  32.155  19.494  69.255    7.103   1.464  -1.466  C6   KV4  10  
KV4  C5   C11  C   0  1  N  N  R  33.658  19.414  69.501    7.094   0.835  -0.049  C5   KV4  11  
KV4  C4   C12  C   0  1  Y  N  N  34.370  21.307  67.963    6.827  -1.670  -0.189  C4   KV4  12  
KV4  C3   C13  C   0  1  Y  N  N  36.069  22.063  68.988    8.888  -2.340  -0.114  C3   KV4  13  
KV4  N5   N1   N   0  1  N  N  N  30.976  15.029  61.732   -3.701   0.420   1.251  N5   KV4  14  
KV4  S    S1   S   0  1  N  N  N  32.524  18.685  65.953    2.698   1.548   0.884  S    KV4  15  
KV4  O1   O1   O   0  1  N  N  N  31.643  17.354  70.332    6.631   3.833  -1.081  O1   KV4  16  
KV4  O    O2   O   0  1  N  N  N  31.477  20.062  70.374    8.380   2.032  -1.763  O    KV4  17  
KV4  O2   O3   O   0  1  N  N  N  34.132  18.343  68.707    5.700   0.867   0.325  O2   KV4  18  
KV4  N4   N2   N   0  1  Y  N  N  34.418  20.613  69.145    7.588  -0.543  -0.093  N4   KV4  19  
KV4  N2   N3   N   0  1  Y  N  N  35.909  20.784  71.057   10.067  -0.306   0.056  N2   KV4  20  
KV4  C1   C14  C   0  1  Y  N  N  36.987  21.487  71.406   11.196  -0.983   0.079  C1   KV4  21  
KV4  N1   N4   N   0  1  Y  N  N  37.676  22.386  70.685   11.234  -2.301   0.011  N1   KV4  22  
KV4  N3   N5   N   0  1  Y  N  N  35.338  22.183  67.815    7.592  -2.723  -0.203  N3   KV4  23  
KV4  C    C15  C   0  1  Y  N  N  37.262  22.671  69.431   10.119  -3.017  -0.085  C    KV4  24  
KV4  N    N6   N   0  1  N  N  N  38.099  23.334  68.625   10.169  -4.399  -0.156  N    KV4  25  
KV4  H1   H1   H   0  1  N  N  N  33.263  16.477  68.860    5.237   2.865   0.661  H1   KV4  26  
KV4  H2   H2   H   0  1  N  N  N  29.708  14.623  63.352   -2.061  -0.383   2.291  H2   KV4  27  
KV4  H3   H3   H   0  1  N  N  N  31.368  15.153  63.788   -2.351   1.352   2.564  H3   KV4  28  
KV4  H4   H4   H   0  1  N  N  N  29.634  17.093  62.296   -1.363   0.101  -0.039  H4   KV4  29  
KV4  H5   H5   H   0  1  N  N  N  29.215  16.750  64.008   -1.654   1.836   0.234  H5   KV4  30  
KV4  H6   H6   H   0  1  N  N  N  32.088  17.233  63.628    0.044   1.835   2.041  H6   KV4  31  
KV4  H7   H7   H   0  1  N  N  N  31.080  18.612  63.071    0.334   0.100   1.768  H7   KV4  32  
KV4  H8   H8   H   0  1  N  N  N  30.277  19.063  65.177    1.031   0.584  -0.562  H8   KV4  33  
KV4  H9   H9   H   0  1  N  N  N  30.513  17.377  65.750    0.741   2.319  -0.289  H9   KV4  34  
KV4  H10  H10  H   0  1  N  N  N  32.232  16.413  66.693    3.354   2.871  -1.018  H10  KV4  35  
KV4  H11  H11  H   0  1  N  N  N  33.967  16.851  66.542    3.644   1.136  -1.291  H11  KV4  36  
KV4  H12  H12  H   0  1  N  N  N  29.620  13.703  61.341   -4.405  -0.850   2.769  H12  KV4  37  
KV4  H13  H13  H   0  1  N  N  N  29.176  15.433  61.143   -4.695   0.885   3.043  H13  KV4  38  
KV4  H15  H15  H   0  1  N  N  N  30.924  17.901  68.440    5.415   2.610  -2.241  H15  KV4  39  
KV4  H16  H16  H   0  1  N  N  N  31.947  20.045  68.326    6.821   0.728  -2.219  H16  KV4  40  
KV4  H17  H17  H   0  1  N  N  N  33.821  19.188  70.565    7.690   1.434   0.640  H17  KV4  41  
KV4  H18  H18  H   0  1  N  N  N  33.604  21.147  67.219    5.749  -1.687  -0.245  H18  KV4  42  
KV4  H19  H19  H   0  1  N  N  N  31.638  14.281  61.764   -3.714  -0.268   0.513  H19  KV4  43  
KV4  H21  H21  H   0  1  N  N  N  30.876  17.699  70.773    7.180   4.161  -1.807  H21  KV4  44  
KV4  H22  H22  H   0  1  N  N  N  31.711  20.979  70.454    8.410   2.515  -2.601  H22  KV4  45  
KV4  H23  H23  H   0  1  N  N  N  37.356  21.309  72.405   12.126  -0.439   0.157  H23  KV4  46  
KV4  H24  H24  H   0  1  N  N  N  38.951  23.524  69.112    9.348  -4.911  -0.226  H24  KV4  47  
KV4  H25  H25  H   0  1  N  N  N  38.294  22.778  67.817   11.025  -4.855  -0.134  H25  KV4  48  
KV4  C15  C16  C   0  1  Y  N  N       ?       ?       ?   -6.049  -0.040   1.676  C15  KV4  49  
KV4  C16  C17  C   0  1  Y  N  N       ?       ?       ?   -6.478  -1.268   1.208  C16  KV4  50  
KV4  C17  C27  C   0  1  Y  N  N       ?       ?       ?   -7.730  -1.394   0.640  C17  KV4  51  
KV4  C18  C18  C   0  1  Y  N  N       ?       ?       ?   -8.561  -0.280   0.538  C18  KV4  52  
KV4  C19  C19  C   0  1  Y  N  N       ?       ?       ?   -8.123   0.955   1.010  C19  KV4  53  
KV4  C20  C20  C   0  1  Y  N  N       ?       ?       ?   -6.872   1.068   1.582  C20  KV4  54  
KV4  C21  C21  C   0  1  Y  N  N       ?       ?       ?   -9.907  -0.409  -0.073  C21  KV4  55  
KV4  C22  C22  C   0  1  Y  N  N       ?       ?       ?  -10.738   0.705  -0.175  C22  KV4  56  
KV4  C23  C23  C   0  1  Y  N  N       ?       ?       ?  -11.989   0.580  -0.744  C23  KV4  57  
KV4  C24  C24  C   0  1  Y  N  N       ?       ?       ?  -12.419  -0.650  -1.213  C24  KV4  58  
KV4  C25  C25  C   0  1  Y  N  N       ?       ?       ?  -11.597  -1.759  -1.114  C25  KV4  59  
KV4  C26  C26  C   0  1  Y  N  N       ?       ?       ?  -10.342  -1.643  -0.552  C26  KV4  60  
KV4  CL1  CL1  CL  0  0  N  N  N       ?       ?       ?  -13.994  -0.800  -1.928  CL1  KV4  61  
KV4  H14  H14  H   0  1  N  N  N       ?       ?       ?   -5.834  -2.131   1.288  H14  KV4  62  
KV4  H20  H20  H   0  1  N  N  N       ?       ?       ?   -8.064  -2.354   0.275  H20  KV4  63  
KV4  H26  H26  H   0  1  N  N  N       ?       ?       ?   -8.763   1.822   0.933  H26  KV4  64  
KV4  H27  H27  H   0  1  N  N  N       ?       ?       ?   -6.531   2.025   1.949  H27  KV4  65  
KV4  H28  H28  H   0  1  N  N  N       ?       ?       ?  -10.404   1.664   0.191  H28  KV4  66  
KV4  H29  H29  H   0  1  N  N  N       ?       ?       ?  -12.634   1.443  -0.823  H29  KV4  67  
KV4  H30  H30  H   0  1  N  N  N       ?       ?       ?  -11.937  -2.716  -1.481  H30  KV4  68  
KV4  H31  H31  H   0  1  N  N  N       ?       ?       ?   -9.702  -2.510  -0.475  H31  KV4  69  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KV4  C14  N5   SING  N  N   1  
KV4  N5   C13  SING  N  N   2  
KV4  C13  C12  SING  N  N   3  
KV4  C12  C11  SING  N  N   4  
KV4  C11  C10  SING  N  N   5  
KV4  C10  S    SING  N  N   6  
KV4  S    C9   SING  N  N   7  
KV4  C9   C8   SING  N  N   8  
KV4  N3   C4   DOUB  Y  N   9  
KV4  N3   C3   SING  Y  N  10  
KV4  C4   N4   SING  Y  N  11  
KV4  C8   O2   SING  N  N  12  
KV4  C8   C7   SING  N  N  13  
KV4  N    C    SING  N  N  14  
KV4  O2   C5   SING  N  N  15  
KV4  C3   C    DOUB  Y  N  16  
KV4  C3   C2   SING  Y  N  17  
KV4  C7   C6   SING  N  N  18  
KV4  C7   O1   SING  N  N  19  
KV4  N4   C5   SING  N  N  20  
KV4  N4   C2   SING  Y  N  21  
KV4  C6   C5   SING  N  N  22  
KV4  C6   O    SING  N  N  23  
KV4  C    N1   SING  Y  N  24  
KV4  C2   N2   DOUB  Y  N  25  
KV4  N1   C1   DOUB  Y  N  26  
KV4  N2   C1   SING  Y  N  27  
KV4  C8   H1   SING  N  N  28  
KV4  C13  H2   SING  N  N  29  
KV4  C13  H3   SING  N  N  30  
KV4  C12  H4   SING  N  N  31  
KV4  C12  H5   SING  N  N  32  
KV4  C11  H6   SING  N  N  33  
KV4  C11  H7   SING  N  N  34  
KV4  C10  H8   SING  N  N  35  
KV4  C10  H9   SING  N  N  36  
KV4  C9   H10  SING  N  N  37  
KV4  C9   H11  SING  N  N  38  
KV4  C14  H12  SING  N  N  39  
KV4  C14  H13  SING  N  N  40  
KV4  C7   H15  SING  N  N  41  
KV4  C6   H16  SING  N  N  42  
KV4  C5   H17  SING  N  N  43  
KV4  C4   H18  SING  N  N  44  
KV4  N5   H19  SING  N  N  45  
KV4  O1   H21  SING  N  N  46  
KV4  O    H22  SING  N  N  47  
KV4  C1   H23  SING  N  N  48  
KV4  N    H24  SING  N  N  49  
KV4  N    H25  SING  N  N  50  
KV4  C14  C15  SING  N  N  51  
KV4  C15  C16  SING  Y  N  52  
KV4  C16  C17  DOUB  Y  N  53  
KV4  C17  C18  SING  Y  N  54  
KV4  C18  C19  DOUB  Y  N  55  
KV4  C19  C20  SING  Y  N  56  
KV4  C20  C15  DOUB  Y  N  57  
KV4  C18  C21  SING  N  N  58  
KV4  C21  C22  SING  Y  N  59  
KV4  C22  C23  DOUB  Y  N  60  
KV4  C23  C24  SING  Y  N  61  
KV4  C24  C25  DOUB  Y  N  62  
KV4  C25  C26  SING  Y  N  63  
KV4  C26  C21  DOUB  Y  N  64  
KV4  C24  CL1  SING  N  N  65  
KV4  C16  H14  SING  N  N  66  
KV4  C17  H20  SING  N  N  67  
KV4  C19  H26  SING  N  N  68  
KV4  C20  H27  SING  N  N  69  
KV4  C22  H28  SING  N  N  70  
KV4  C23  H29  SING  N  N  71  
KV4  C25  H30  SING  N  N  72  
KV4  C26  H31  SING  N  N  73  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KV4  SMILES            ACDLabs               12.01  "C1(OC(C(C1O)O)n3c2ncnc(c2nc3)N)CSCCCCNCc4ccc(cc4)c5ccc(cc5)Cl"  
KV4  InChI             InChI                 1.03   "InChI=1S/C27H31ClN6O3S/c28-20-9-7-19(8-10-20)18-5-3-17(4-6-18)13-30-11-1-2-12-38-14-21-23(35)24(36)27(37-21)34-16-33-22-25(29)31-15-32-26(22)34/h3-10,15-16,21,23-24,27,30,35-36H,1-2,11-14H2,(H2,29,31,32)/t21-,23-,24-,27-/m1/s1"  
KV4  InChIKey          InChI                 1.03   MOBXZFNRPCKUOV-VBHAUSMQSA-N  
KV4  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CSCCCCNCc4ccc(cc4)c5ccc(Cl)cc5)[C@@H](O)[C@H]3O"  
KV4  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](CSCCCCNCc4ccc(cc4)c5ccc(Cl)cc5)[CH](O)[CH]3O"  
KV4  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1cc(ccc1CNCCCCSC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)c5ccc(cc5)Cl"  
KV4  SMILES            "OpenEye OEToolkits"  2.0.6  "c1cc(ccc1CNCCCCSCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)c5ccc(cc5)Cl"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KV4  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-S-(4-{[(4'-chloro[1,1'-biphenyl]-4-yl)methyl]amino}butyl)-5'-thioadenosine"  
KV4  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(2~{R},3~{R},4~{S},5~{S})-2-(6-aminopurin-9-yl)-5-[4-[[4-(4-chlorophenyl)phenyl]methylamino]butylsulfanylmethyl]oxolane-3,4-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KV4  "Create component"  2019-01-18  RCSB  
KV4  "Initial release"   2019-01-30  RCSB  
KV4  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     KV4
_pdbx_chem_comp_synonyms.name        SGC8158
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
