data_KG4
#

_chem_comp.id                                   KG4
_chem_comp.name                                 "5'-O-[(R)-(carboxyoxy)(hydroxy)phosphoryl]adenosine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H14 N5 O9 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-12-03
_chem_comp.pdbx_modified_date                   2019-05-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       391.231
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KG4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6N9A
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KG4  O1A    O1   O  0  1  N  N  N  -66.711  31.195  3.582  -3.984   0.987   1.611  O1A    KG4   1  
KG4  PA     P1   P  0  1  N  N  N  -66.072  29.936  4.124  -4.114   0.126   0.257  PA     KG4   2  
KG4  O2A    O2   O  0  1  N  N  N  -65.240  29.272  3.049  -4.974  -1.053   0.503  O2A    KG4   3  
KG4  O3A    O3   O  0  1  N  N  N  -65.108  30.331  5.357  -4.769   1.036  -0.898  O3A    KG4   4  
KG4  CB     C1   C  0  1  N  N  N  -64.340  29.327  6.087  -6.037   1.443  -0.709  CB     KG4   5  
KG4  O2B    O4   O  0  1  N  N  N  -63.759  28.415  5.452  -6.635   1.121   0.298  O2B    KG4   6  
KG4  O1B    O5   O  0  1  N  N  N  -64.278  29.408  7.338  -6.644   2.206  -1.636  O1B    KG4   7  
KG4  "O5'"  O6   O  0  1  N  N  N  -67.236  28.932  4.632  -2.653  -0.364  -0.210  "O5'"  KG4   8  
KG4  "C5'"  C2   C  0  1  N  N  N  -67.183  27.523  4.380  -1.856  -1.273   0.552  "C5'"  KG4   9  
KG4  "C4'"  C3   C  0  1  N  N  R  -68.323  26.781  5.082  -0.533  -1.525  -0.174  "C4'"  KG4  10  
KG4  "C3'"  C4   C  0  1  N  N  S  -68.342  25.291  4.744   0.308  -2.572   0.588  "C3'"  KG4  11  
KG4  "O3'"  O7   O  0  1  N  N  N  -68.465  24.489  5.926   0.155  -3.864  -0.004  "O3'"  KG4  12  
KG4  "C2'"  C5   C  0  1  N  N  R  -69.563  25.098  3.868   1.762  -2.073   0.431  "C2'"  KG4  13  
KG4  "O2'"  O8   O  0  1  N  N  N  -70.172  23.814  4.045   2.551  -3.041  -0.263  "O2'"  KG4  14  
KG4  "C1'"  C6   C  0  1  N  N  R  -70.469  26.232  4.317   1.627  -0.783  -0.408  "C1'"  KG4  15  
KG4  "O4'"  O9   O  0  1  N  N  N  -69.595  27.307  4.680   0.275  -0.328  -0.174  "O4'"  KG4  16  
KG4  N9     N1   N  0  1  Y  N  N  -71.420  26.604  3.244   2.590   0.224   0.045  N9     KG4  17  
KG4  C4     C7   C  0  1  Y  N  N  -72.748  26.510  3.357   3.899   0.332  -0.353  C4     KG4  18  
KG4  C5     C8   C  0  1  Y  N  N  -73.298  26.939  2.165   4.424   1.435   0.341  C5     KG4  19  
KG4  N7     N2   N  0  1  Y  N  N  -72.281  27.286  1.349   3.428   1.934   1.112  N7     KG4  20  
KG4  C8     C9   C  0  1  Y  N  N  -71.124  27.076  2.023   2.349   1.227   0.935  C8     KG4  21  
KG4  N3     N3   N  0  1  Y  N  N  -73.559  26.098  4.367   4.685  -0.341  -1.186  N3     KG4  22  
KG4  C2     C10  C  0  1  Y  N  N  -74.896  26.096  4.235   5.939   0.017  -1.362  C2     KG4  23  
KG4  N1     N4   N  0  1  Y  N  N  -75.499  26.499  3.105   6.477   1.046  -0.733  N1     KG4  24  
KG4  C6     C11  C  0  1  Y  N  N  -74.777  26.926  2.047   5.768   1.779   0.119  C6     KG4  25  
KG4  N6     N5   N  0  1  N  N  N  -75.397  27.330  0.916   6.341   2.855   0.774  N6     KG4  26  
KG4  H1     H1   H  0  1  N  N  N  -66.459  31.313  2.674  -3.433   1.777   1.523  H1     KG4  27  
KG4  H2     H2   H  0  1  N  N  N  -63.746  28.697  7.676  -7.556   2.474  -1.456  H2     KG4  28  
KG4  H3     H3   H  0  1  N  N  N  -67.259  27.351  3.296  -1.656  -0.846   1.535  H3     KG4  29  
KG4  H4     H4   H  0  1  N  N  N  -66.223  27.131  4.747  -2.392  -2.216   0.668  H4     KG4  30  
KG4  H5     H5   H  0  1  N  N  N  -68.198  26.893  6.169  -0.719  -1.857  -1.195  H5     KG4  31  
KG4  H6     H6   H  0  1  N  N  N  -67.434  25.028  4.182   0.023  -2.599   1.640  H6     KG4  32  
KG4  H7     H7   H  0  1  N  N  N  -67.698  24.612  6.474   0.662  -4.560   0.436  H7     KG4  33  
KG4  H8     H8   H  0  1  N  N  N  -69.284  25.251  2.815   2.198  -1.851   1.404  H8     KG4  34  
KG4  H9     H9   H  0  1  N  N  N  -69.574  23.136  3.753   2.668  -3.871   0.218  H9     KG4  35  
KG4  H10    H10  H  0  1  N  N  N  -71.035  25.899  5.199   1.774  -1.001  -1.466  H10    KG4  36  
KG4  H11    H11  H  0  1  N  N  N  -70.130  27.258  1.641   1.404   1.406   1.427  H11    KG4  37  
KG4  H12    H12  H  0  1  N  N  N  -75.504  25.760  5.062   6.551  -0.551  -2.047  H12    KG4  38  
KG4  H13    H13  H  0  1  N  N  N  -76.387  27.249  1.031   5.814   3.382   1.395  H13    KG4  39  
KG4  H14    H14  H  0  1  N  N  N  -75.160  28.283  0.728   7.270   3.083   0.613  H14    KG4  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KG4  N6     C6     SING  N  N   1  
KG4  N7     C8     DOUB  Y  N   2  
KG4  N7     C5     SING  Y  N   3  
KG4  C8     N9     SING  Y  N   4  
KG4  C6     C5     DOUB  Y  N   5  
KG4  C6     N1     SING  Y  N   6  
KG4  C5     C4     SING  Y  N   7  
KG4  O2A    PA     DOUB  N  N   8  
KG4  N1     C2     DOUB  Y  N   9  
KG4  N9     C4     SING  Y  N  10  
KG4  N9     "C1'"  SING  N  N  11  
KG4  C4     N3     DOUB  Y  N  12  
KG4  O1A    PA     SING  N  N  13  
KG4  "C2'"  "O2'"  SING  N  N  14  
KG4  "C2'"  "C1'"  SING  N  N  15  
KG4  "C2'"  "C3'"  SING  N  N  16  
KG4  PA     "O5'"  SING  N  N  17  
KG4  PA     O3A    SING  N  N  18  
KG4  C2     N3     SING  Y  N  19  
KG4  "C1'"  "O4'"  SING  N  N  20  
KG4  "C5'"  "O5'"  SING  N  N  21  
KG4  "C5'"  "C4'"  SING  N  N  22  
KG4  "O4'"  "C4'"  SING  N  N  23  
KG4  "C3'"  "C4'"  SING  N  N  24  
KG4  "C3'"  "O3'"  SING  N  N  25  
KG4  O3A    CB     SING  N  N  26  
KG4  O2B    CB     DOUB  N  N  27  
KG4  CB     O1B    SING  N  N  28  
KG4  O1A    H1     SING  N  N  29  
KG4  O1B    H2     SING  N  N  30  
KG4  "C5'"  H3     SING  N  N  31  
KG4  "C5'"  H4     SING  N  N  32  
KG4  "C4'"  H5     SING  N  N  33  
KG4  "C3'"  H6     SING  N  N  34  
KG4  "O3'"  H7     SING  N  N  35  
KG4  "C2'"  H8     SING  N  N  36  
KG4  "O2'"  H9     SING  N  N  37  
KG4  "C1'"  H10    SING  N  N  38  
KG4  C8     H11    SING  N  N  39  
KG4  C2     H12    SING  N  N  40  
KG4  N6     H13    SING  N  N  41  
KG4  N6     H14    SING  N  N  42  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KG4  SMILES            ACDLabs               12.01  "OP(OCC1C(O)C(O)C(O1)n3c2ncnc(c2nc3)N)(OC(O)=O)=O"  
KG4  InChI             InChI                 1.03   "InChI=1S/C11H14N5O9P/c12-8-5-9(14-2-13-8)16(3-15-5)10-7(18)6(17)4(24-10)1-23-26(21,22)25-11(19)20/h2-4,6-7,10,17-18H,1H2,(H,19,20)(H,21,22)(H2,12,13,14)/t4-,6-,7-,10-/m1/s1"  
KG4  InChIKey          InChI                 1.03   ZYLWEGVHTNBJTI-KQYNXXCUSA-N  
KG4  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)OC(O)=O)[C@@H](O)[C@H]3O"  
KG4  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)OC(O)=O)[CH](O)[CH]3O"  
KG4  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OC(=O)O)O)O)N"  
KG4  SMILES            "OpenEye OEToolkits"  2.0.6  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OC(=O)O)O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KG4  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-O-[(R)-(carboxyoxy)(hydroxy)phosphoryl]adenosine"  
KG4  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen carbonate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KG4  "Create component"  2018-12-03  RCSB  
KG4  "Initial release"   2019-05-22  RCSB  
##
