data_JV4
#

_chem_comp.id                                   JV4
_chem_comp.name                                 6-deoxy-6-fluoro-1-O-phosphono-alpha-D-glucopyranose
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 F O8 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;6-deoxy-6-fluoro-1-O-phosphono-alpha-D-glucose; 6-deoxy-6-fluoro-1-O-phosphono-D-glucose;
6-deoxy-6-fluoro-1-O-phosphono-glucose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-09-28
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       262.127
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JV4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6MLF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  JV4  6-deoxy-6-fluoro-1-O-phosphono-alpha-D-glucose  PDB  ?  
2  JV4  6-deoxy-6-fluoro-1-O-phosphono-D-glucose        PDB  ?  
3  JV4  6-deoxy-6-fluoro-1-O-phosphono-glucose          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JV4  C3   C02  C  0  1  N  N  S  27.212  53.202  16.406   1.784  -1.359   0.355  C3   JV4   1  
JV4  C4   C03  C  0  1  N  N  S  28.321  52.349  16.849   2.443   0.008   0.149  C4   JV4   2  
JV4  C5   C05  C  0  1  N  N  S  28.466  51.188  15.870   1.354   1.073  -0.007  C5   JV4   3  
JV4  C6   C06  C  0  1  N  N  N  29.597  50.318  16.288   2.003   2.432  -0.273  C6   JV4   4  
JV4  C1   C09  C  0  1  N  N  R  26.021  51.237  15.508  -0.174  -0.520  -0.945  C1   JV4   5  
JV4  C2   C15  C  0  1  N  N  R  25.953  52.410  16.503   0.853  -1.648  -0.827  C2   JV4   6  
JV4  F07  F07  F  0  1  N  N  N  29.248  49.582  17.380   1.016   3.423  -0.302  F07  JV4   7  
JV4  O5   O08  O  0  1  N  N  N  27.184  50.400  15.772   0.505   0.727  -1.104  O5   JV4   8  
JV4  O1   O10  O  0  1  N  N  N  26.156  51.753  14.213  -0.975  -0.479   0.238  O1   JV4   9  
JV4  O1P  O1P  O  0  1  N  N  N  23.854  52.887  13.831  -2.562   1.582  -0.145  O1P  JV4  10  
JV4  O2   O2   O  0  1  N  N  N  24.831  53.237  16.233   0.178  -2.889  -0.610  O2   JV4  11  
JV4  O2P  O2P  O  0  1  N  N  N  25.298  52.374  11.840  -3.284  -0.761  -0.742  O2P  JV4  12  
JV4  O3   O3   O  0  1  N  N  N  27.133  54.427  17.210   2.792  -2.369   0.428  O3   JV4  13  
JV4  O3P  O3P  O  0  1  N  N  N  24.206  50.533  13.049  -3.133  -0.190   1.712  O3P  JV4  14  
JV4  O4   O4   O  0  1  N  N  N  29.572  53.113  16.957   3.258   0.321   1.280  O4   JV4  15  
JV4  P11  P11  P  0  1  N  N  N  24.855  51.887  13.214  -2.506   0.021   0.244  P11  JV4  16  
JV4  H3   H1   H  0  1  N  N  N  27.373  53.477  15.353   1.207  -1.350   1.280  H3   JV4  17  
JV4  H4   H2   H  0  1  N  N  N  28.075  51.933  17.837   3.060  -0.017  -0.749  H4   JV4  18  
JV4  H5   H3   H  0  1  N  N  N  28.692  51.604  14.877   0.763   1.125   0.908  H5   JV4  19  
JV4  H61  H4   H  0  1  N  N  N  29.858  49.640  15.462   2.718   2.655   0.519  H61  JV4  20  
JV4  H62  H5   H  0  1  N  N  N  30.466  50.946  16.536   2.520   2.406  -1.232  H62  JV4  21  
JV4  H1   H6   H  0  1  N  N  N  25.101  50.641  15.597  -0.813  -0.698  -1.810  H1   JV4  22  
JV4  H2   H7   H  0  1  N  N  N  25.873  51.994  17.518   1.438  -1.706  -1.745  H2   JV4  23  
JV4  H8   H8   H  0  1  N  N  N  23.714  53.608  13.229  -2.072   2.156   0.460  H8   JV4  24  
JV4  HO2  H9   H  0  1  N  Y  N  24.807  53.953  16.857  -0.430  -3.135  -1.321  HO2  JV4  25  
JV4  HO3  H10  H  0  1  N  Y  N  27.946  54.912  17.130   2.445  -3.263   0.551  HO3  JV4  26  
JV4  H11  H11  H  0  1  N  N  N  24.217  50.286  12.132  -4.055   0.091   1.789  H11  JV4  27  
JV4  HO4  H12  H  0  1  N  Y  N  29.455  53.828  17.571   3.707   1.175   1.217  HO4  JV4  28  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JV4  O2P  P11  DOUB  N  N   1  
JV4  O3P  P11  SING  N  N   2  
JV4  P11  O1P  SING  N  N   3  
JV4  P11  O1   SING  N  N   4  
JV4  O1   C1   SING  N  N   5  
JV4  C1   O5   SING  N  N   6  
JV4  C1   C2   SING  N  N   7  
JV4  O5   C5   SING  N  N   8  
JV4  C5   C6   SING  N  N   9  
JV4  C5   C4   SING  N  N  10  
JV4  O2   C2   SING  N  N  11  
JV4  C6   F07  SING  N  N  12  
JV4  C3   C2   SING  N  N  13  
JV4  C3   C4   SING  N  N  14  
JV4  C3   O3   SING  N  N  15  
JV4  C4   O4   SING  N  N  16  
JV4  C3   H3   SING  N  N  17  
JV4  C4   H4   SING  N  N  18  
JV4  C5   H5   SING  N  N  19  
JV4  C6   H61  SING  N  N  20  
JV4  C6   H62  SING  N  N  21  
JV4  C1   H1   SING  N  N  22  
JV4  C2   H2   SING  N  N  23  
JV4  O1P  H8   SING  N  N  24  
JV4  O2   HO2  SING  N  N  25  
JV4  O3   HO3  SING  N  N  26  
JV4  O3P  H11  SING  N  N  27  
JV4  O4   HO4  SING  N  N  28  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JV4  SMILES            ACDLabs               12.01  "C1(C(C(OC(C1O)CF)OP(O)(=O)O)O)O"  
JV4  InChI             InChI                 1.03   "InChI=1S/C6H12FO8P/c7-1-2-3(8)4(9)5(10)6(14-2)15-16(11,12)13/h2-6,8-10H,1H2,(H2,11,12,13)/t2-,3-,4+,5-,6-/m1/s1"  
JV4  InChIKey          InChI                 1.03   ZDQPPJLAZOIPEN-VFUOTHLCSA-N  
JV4  SMILES_CANONICAL  CACTVS                3.385  "O[C@H]1[C@H](O)[C@@H](CF)O[C@H](O[P](O)(O)=O)[C@@H]1O"  
JV4  SMILES            CACTVS                3.385  "O[CH]1[CH](O)[CH](CF)O[CH](O[P](O)(O)=O)[CH]1O"  
JV4  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)O)O)O)O)F"  
JV4  SMILES            "OpenEye OEToolkits"  2.0.6  "C(C1C(C(C(C(O1)OP(=O)(O)O)O)O)O)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
JV4  "SYSTEMATIC NAME"  ACDLabs               12.01  6-deoxy-6-fluoro-1-O-phosphono-alpha-D-glucopyranose  
JV4  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "[(2~{R},3~{R},4~{S},5~{S},6~{S})-6-(fluoranylmethyl)-3,4,5-tris(oxidanyl)oxan-2-yl] dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
JV4  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
JV4  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
JV4  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
JV4  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JV4  "Create component"          2018-09-28  RCSB  
JV4  "Initial release"           2019-07-31  RCSB  
JV4  "Other modification"        2020-07-03  RCSB  
JV4  "Modify synonyms"           2020-07-17  RCSB  
JV4  "Modify atom id"            2020-07-17  RCSB  
JV4  "Modify component atom id"  2020-07-17  RCSB  
JV4  "Modify leaving atom flag"  2020-07-17  RCSB  
##
