data_I54
# 
_chem_comp.id                                    I54 
_chem_comp.name                                  "(1S,2S)-2-[(N-{[(2-chlorophenyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H30 Cl N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-01-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        519.996 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     I54 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7TIW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
I54 C1  C1  C  0 1 Y N N N N N -9.382  10.260 67.968 -6.074 -0.367 -0.797 C1  I54 1  
I54 C2  C2  C  0 1 Y N N N N N -8.662  11.387 68.357 -5.780 -1.544 -1.459 C2  I54 2  
I54 C3  C3  C  0 1 Y N N N N N -7.617  11.865 67.574 -6.778 -2.227 -2.129 C3  I54 3  
I54 C4  C4  C  0 1 Y N N N N N -7.277  11.214 66.394 -8.069 -1.733 -2.137 C4  I54 4  
I54 C5  C5  C  0 1 Y N N N N N -7.987  10.086 66.000 -8.364 -0.557 -1.475 C5  I54 5  
I54 C6  C6  C  0 1 Y N N N N N -9.035  9.611  66.783 -7.367 0.124  -0.799 C6  I54 6  
I54 C7  C7  C  0 1 N N N N N N -10.563 9.705  68.840 -4.986 0.378  -0.067 C7  I54 7  
I54 C9  C8  C  0 1 N N N N N N -11.643 11.686 69.456 -2.650 0.198  0.391  C9  I54 8  
I54 C12 C9  C  0 1 N N S N N N -12.117 14.075 69.764 -0.279 0.167  0.951  C12 I54 9  
I54 C13 C10 C  0 1 N N N N N N -11.695 15.155 70.798 -0.232 -0.279 2.414  C13 I54 10 
I54 C14 C11 C  0 1 N N N N N N -12.470 14.883 72.134 -1.436 0.296  3.161  C14 I54 11 
I54 C15 C12 C  0 1 N N N N N N -12.003 15.927 73.167 -1.458 -0.250 4.590  C15 I54 12 
I54 C16 C13 C  0 1 N N N N N N -13.961 15.032 71.863 -1.331 1.822  3.200  C16 I54 13 
I54 C17 C14 C  0 1 N N N N N N -11.534 14.528 68.433 0.969  -0.296 0.244  C17 I54 14 
I54 C20 C15 C  0 1 N N S N N N -11.771 15.461 66.237 3.391  -0.333 -0.016 C20 I54 15 
I54 C21 C16 C  0 1 N N S N N N -12.038 16.942 66.035 3.915  -1.604 0.655  C21 I54 16 
I54 C24 C17 C  0 1 N N N N N N -12.351 14.654 65.052 4.457  0.762  0.062  C24 I54 17 
I54 C25 C18 C  0 1 N N S N N N -11.705 13.219 65.012 3.949  2.020  -0.645 C25 I54 18 
I54 C26 C19 C  0 1 N N N N N N -10.233 13.338 64.761 3.790  1.761  -2.161 C26 I54 19 
I54 C27 C20 C  0 1 N N N N N N -9.952  12.053 63.874 4.223  3.119  -2.759 C27 I54 20 
I54 C29 C21 C  0 1 N N N N N N -12.295 12.412 63.886 4.977  3.126  -0.560 C29 I54 21 
I54 CL1 CL1 CL 0 0 N N N N N N -9.883  8.237  66.282 -7.736 1.602  0.034  CL1 I54 22 
I54 N11 N1  N  0 1 N N N N N N -11.539 12.804 70.170 -1.454 -0.417 0.300  N11 I54 23 
I54 N19 N2  N  0 1 N N N N N N -12.338 15.018 67.502 2.178  0.117  0.671  N19 I54 24 
I54 N28 N3  N  0 1 N N N N N N -11.320 11.747 63.256 5.115  3.720  -1.761 N28 I54 25 
I54 O10 O1  O  0 1 N N N N N N -12.298 11.634 68.441 -2.754 1.237  1.014  O10 I54 26 
I54 O18 O2  O  0 1 N N N N N N -10.349 14.454 68.246 0.884  -1.040 -0.710 O18 I54 27 
I54 O22 O3  O  0 1 N N N N N N -11.533 17.518 65.093 2.875  -2.583 0.700  O22 I54 28 
I54 O30 O4  O  0 1 N N N N N N -13.467 12.351 63.601 5.587  3.432  0.443  O30 I54 29 
I54 O8  O5  O  0 1 N N N N N N -10.985 10.619 69.883 -3.731 -0.338 -0.207 O8  I54 30 
I54 H1  H1  H  0 1 N N N N N N -8.918  11.894 69.275 -4.772 -1.930 -1.454 H1  I54 31 
I54 H2  H2  H  0 1 N N N N N N -7.069  12.743 67.883 -6.549 -3.147 -2.647 H2  I54 32 
I54 H3  H3  H  0 1 N N N N N N -6.464  11.583 65.786 -8.848 -2.267 -2.662 H3  I54 33 
I54 H4  H4  H  0 1 N N N N N N -7.725  9.577  65.084 -9.373 -0.171 -1.482 H4  I54 34 
I54 H5  H5  H  0 1 N N N N N N -11.421 9.508  68.181 -4.883 1.378  -0.489 H5  I54 35 
I54 H6  H6  H  0 1 N N N N N N -10.238 8.765  69.310 -5.244 0.455  0.989  H6  I54 36 
I54 H7  H7  H  0 1 N N N N N N -13.214 14.018 69.704 -0.341 1.255  0.904  H7  I54 37 
I54 H8  H8  H  0 1 N N N N N N -10.611 15.096 70.977 -0.260 -1.367 2.462  H8  I54 38 
I54 H9  H9  H  0 1 N N N N N N -11.949 16.155 70.417 0.688  0.082  2.874  H9  I54 39 
I54 H10 H10 H  0 1 N N N N N N -12.246 13.868 72.494 -2.354 0.008  2.648  H10 I54 40 
I54 H11 H11 H  0 1 N N N N N N -12.530 15.763 74.119 -0.540 0.038  5.103  H11 I54 41 
I54 H12 H12 H  0 1 N N N N N N -10.919 15.826 73.326 -2.316 0.160  5.123  H12 I54 42 
I54 H13 H13 H  0 1 N N N N N N -12.226 16.937 72.794 -1.533 -1.337 4.563  H13 I54 43 
I54 H14 H14 H  0 1 N N N N N N -14.523 14.845 72.790 -0.414 2.111  3.713  H14 I54 44 
I54 H15 H15 H  0 1 N N N N N N -14.169 16.052 71.508 -1.316 2.211  2.182  H15 I54 45 
I54 H16 H16 H  0 1 N N N N N N -14.268 14.307 71.095 -2.189 2.232  3.733  H16 I54 46 
I54 H17 H17 H  0 1 N N N N N N -10.682 15.305 66.254 3.161  -0.542 -1.060 H17 I54 47 
I54 H18 H18 H  0 1 N N N N N N -13.120 16.958 65.839 4.240  -1.372 1.669  H18 I54 48 
I54 H19 H19 H  0 1 N N N N N N -12.131 15.179 64.111 4.667  0.991  1.107  H19 I54 49 
I54 H20 H20 H  0 1 N N N N N N -13.440 14.560 65.173 5.370  0.415  -0.424 H20 I54 50 
I54 H21 H21 H  0 1 N N N N N N -11.886 12.715 65.973 3.003  2.343  -0.212 H21 I54 51 
I54 H22 H22 H  0 1 N N N N N N -9.662  13.309 65.701 4.452  0.961  -2.492 H22 I54 52 
I54 H23 H23 H  0 1 N N N N N N -9.993  14.262 64.215 2.754  1.537  -2.412 H23 I54 53 
I54 H24 H24 H  0 1 N N N N N N -9.603  11.214 64.494 4.756  2.965  -3.697 H24 I54 54 
I54 H25 H25 H  0 1 N N N N N N -9.206  12.267 63.094 3.352  3.755  -2.920 H25 I54 55 
I54 H26 H26 H  0 1 N N N N N N -11.036 12.768 71.033 -1.372 -1.245 -0.197 H26 I54 56 
I54 H27 H27 H  0 1 N N N N N N -13.322 15.083 67.666 2.246  0.713  1.434  H27 I54 57 
I54 H28 H28 H  0 1 N N N N N N -11.465 11.130 62.482 5.725  4.452  -1.942 H28 I54 58 
I54 S1  S1  S  0 1 N Y N N N N ?       ?      ?      5.317  -2.255 -0.295 S1  I54 59 
I54 O3  O6  O  0 1 N Y N N N N ?       ?      ?      5.837  -3.425 0.322  O3  I54 60 
I54 O1  O7  O  0 1 N Y N N N N ?       ?      ?      5.034  -2.225 -1.687 O1  I54 61 
I54 O2  O8  O  0 1 N Y N N N N ?       ?      ?      6.414  -1.216 -0.112 O2  I54 62 
I54 H29 H29 H  0 1 N N N N N N -11.793 18.432 65.104 2.092  -2.302 1.193  H29 I54 63 
I54 H30 H30 H  0 1 N Y N N N N ?       ?      ?      7.239  -1.430 -0.570 H30 I54 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
I54 N28 C27 SING N N 1  
I54 N28 C29 SING N N 2  
I54 O30 C29 DOUB N N 3  
I54 C27 C26 SING N N 4  
I54 C29 C25 SING N N 5  
I54 C26 C25 SING N N 6  
I54 C25 C24 SING N N 7  
I54 C24 C20 SING N N 8  
I54 O22 C21 SING N N 9  
I54 C5  C4  DOUB Y N 10 
I54 C5  C6  SING Y N 11 
I54 C21 C20 SING N N 12 
I54 C20 N19 SING N N 13 
I54 CL1 C6  SING N N 14 
I54 C4  C3  SING Y N 15 
I54 C6  C1  DOUB Y N 16 
I54 N19 C17 SING N N 17 
I54 C3  C2  DOUB Y N 18 
I54 C1  C2  SING Y N 19 
I54 C1  C7  SING N N 20 
I54 O18 C17 DOUB N N 21 
I54 C17 C12 SING N N 22 
I54 O10 C9  DOUB N N 23 
I54 C7  O8  SING N N 24 
I54 C9  O8  SING N N 25 
I54 C9  N11 SING N N 26 
I54 C12 N11 SING N N 27 
I54 C12 C13 SING N N 28 
I54 C13 C14 SING N N 29 
I54 C16 C14 SING N N 30 
I54 C14 C15 SING N N 31 
I54 C2  H1  SING N N 32 
I54 C3  H2  SING N N 33 
I54 C4  H3  SING N N 34 
I54 C5  H4  SING N N 35 
I54 C7  H5  SING N N 36 
I54 C7  H6  SING N N 37 
I54 C12 H7  SING N N 38 
I54 C13 H8  SING N N 39 
I54 C13 H9  SING N N 40 
I54 C14 H10 SING N N 41 
I54 C15 H11 SING N N 42 
I54 C15 H12 SING N N 43 
I54 C15 H13 SING N N 44 
I54 C16 H14 SING N N 45 
I54 C16 H15 SING N N 46 
I54 C16 H16 SING N N 47 
I54 C20 H17 SING N N 48 
I54 C21 H18 SING N N 49 
I54 C24 H19 SING N N 50 
I54 C24 H20 SING N N 51 
I54 C25 H21 SING N N 52 
I54 C26 H22 SING N N 53 
I54 C26 H23 SING N N 54 
I54 C27 H24 SING N N 55 
I54 C27 H25 SING N N 56 
I54 N11 H26 SING N N 57 
I54 N19 H27 SING N N 58 
I54 N28 H28 SING N N 59 
I54 C21 S1  SING N N 60 
I54 S1  O3  DOUB N N 61 
I54 S1  O1  DOUB N N 62 
I54 S1  O2  SING N N 63 
I54 O22 H29 SING N N 64 
I54 O2  H30 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
I54 SMILES           ACDLabs              12.01 "CC(C)CC(NC(=O)OCc1ccccc1Cl)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"                                                                                                                                                                   
I54 InChI            InChI                1.03  "InChI=1S/C21H30ClN3O8S/c1-12(2)9-16(25-21(29)33-11-14-5-3-4-6-15(14)22)19(27)24-17(20(28)34(30,31)32)10-13-7-8-23-18(13)26/h3-6,12-13,16-17,20,28H,7-11H2,1-2H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t13-,16-,17-,20?/m0/s1" 
I54 InChIKey         InChI                1.03  VHSJYWSZMIFGBF-GSVKDTAISA-N                                                                                                                                                                                                      
I54 SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)OCc1ccccc1Cl)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@@H](O)[S](O)(=O)=O"                                                                                                                                              
I54 SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)OCc1ccccc1Cl)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"                                                                                                                                                     
I54 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](O)S(=O)(=O)O)NC(=O)OCc2ccccc2Cl"                                                                                                                                                
I54 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2ccccc2Cl"                                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
I54 "SYSTEMATIC NAME" ACDLabs              12.01 "(1S,2S)-2-[(N-{[(2-chlorophenyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"                                          
I54 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S})-2-[[(2~{S})-2-[(2-chlorophenyl)methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
I54 "Create component" 2022-01-19 RCSB 
I54 "Initial release"  2022-05-04 RCSB 
I54 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            I54 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C21 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
