data_GN4
#

_chem_comp.id                                   GN4
_chem_comp.name                                 2-acetamido-2-deoxy-4-O-phosphono-beta-D-glucopyranose
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C8 H16 N O9 P"
_chem_comp.mon_nstd_parent_comp_id              BM7
_chem_comp.pdbx_synonyms                        
;2-(acetylamino)-2-deoxy-4-O-phosphono-beta-D-glucopyranose; 2-acetamido-2-deoxy-4-O-phosphono-beta-D-glucose;
2-acetamido-2-deoxy-4-O-phosphono-D-glucose; 2-acetamido-2-deoxy-4-O-phosphono-glucose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-05-17
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       301.188
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GN4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6DFE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  GN4  "2-(acetylamino)-2-deoxy-4-O-phosphono-beta-D-glucopyranose"  PDB  ?  
2  GN4  2-acetamido-2-deoxy-4-O-phosphono-beta-D-glucose              PDB  ?  
3  GN4  2-acetamido-2-deoxy-4-O-phosphono-D-glucose                   PDB  ?  
4  GN4  2-acetamido-2-deoxy-4-O-phosphono-glucose                     PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GN4  O7   O7   O  0  1  N  N  N  44.452  44.028  59.808   4.193  -0.438   1.248  O7   GN4   1  
GN4  C7   C7   C  0  1  N  N  N  45.261  44.950  59.885   4.110  -0.982   0.168  C7   GN4   2  
GN4  C8   C8   C  0  1  N  N  N  45.647  45.559  61.217   5.289  -1.737  -0.389  C8   GN4   3  
GN4  N2   N2   N  0  1  N  N  N  45.839  45.463  58.784   2.960  -0.917  -0.533  N2   GN4   4  
GN4  C2   C2   C  0  1  N  N  R  45.537  44.974  57.438   1.811  -0.188   0.010  C2   GN4   5  
GN4  C1   C1   C  0  1  N  N  N  44.353  45.738  56.798   1.935   1.297  -0.341  C1   GN4   6  
GN4  O5   O5   O  0  1  N  N  N  44.164  45.388  55.412   0.785   1.996   0.140  O5   GN4   7  
GN4  C5   C5   C  0  1  N  N  R  45.335  45.356  54.581  -0.448   1.552  -0.429  C5   GN4   8  
GN4  C6   C6   C  0  1  N  N  N  44.884  44.966  53.172  -1.601   2.386   0.134  C6   GN4   9  
GN4  O6   O6   O  0  1  N  N  N  44.898  46.117  52.300  -1.458   3.743  -0.289  O6   GN4  10  
GN4  C3   C3   C  0  1  N  N  R  46.799  44.987  56.572   0.519  -0.744  -0.596  C3   GN4  11  
GN4  C4   C4   C  0  1  N  N  S  46.396  44.418  55.200  -0.667   0.077  -0.081  C4   GN4  12  
GN4  O4   O4   O  0  1  N  N  N  47.559  44.233  54.377  -1.871  -0.385  -0.698  O4   GN4  13  
GN4  P45  P45  P  0  1  N  N  N  48.290  42.778  54.250  -3.117  -0.967   0.139  P45  GN4  14  
GN4  O47  O47  O  0  1  N  N  N  49.772  43.061  54.037  -4.240  -1.511  -0.878  O47  GN4  15  
GN4  O46  O46  O  0  1  N  N  N  47.707  41.984  53.062  -2.655  -2.077   1.004  O46  GN4  16  
GN4  O48  O48  O  0  1  N  N  N  48.066  42.025  55.569  -3.742   0.201   1.054  O48  GN4  17  
GN4  O3   O3   O  0  1  N  N  N  47.861  44.241  57.197   0.360  -2.111  -0.210  O3   GN4  18  
GN4  H81  H1   H  0  1  N  N  N  45.102  45.050  62.025   6.120  -1.684   0.315  H81  GN4  19  
GN4  H82  H2   H  0  1  N  N  N  46.729  45.441  61.374   5.012  -2.780  -0.545  H82  GN4  20  
GN4  H83  H3   H  0  1  N  N  N  45.391  46.629  61.219   5.589  -1.294  -1.338  H83  GN4  21  
GN4  HN2  H4   H  0  1  N  N  N  46.500  46.206  58.889   2.894  -1.352  -1.397  HN2  GN4  22  
GN4  H2   H5   H  0  1  N  N  N  45.223  43.924  57.528   1.785  -0.305   1.094  H2   GN4  23  
GN4  H1   H6   H  0  1  N  N  N  44.805  46.736  56.696   2.003   1.410  -1.423  H1   GN4  24  
GN4  H5   H8   H  0  1  N  N  N  45.769  46.366  54.530  -0.411   1.668  -1.512  H5   GN4  25  
GN4  H61  H9   H  0  1  N  N  N  43.863  44.559  53.218  -2.548   1.989  -0.230  H61  GN4  26  
GN4  H62  H10  H  0  1  N  N  N  45.566  44.201  52.772  -1.583   2.341   1.223  H62  GN4  27  
GN4  HO6  H11  H  0  1  N  Y  N  44.616  45.859  51.430  -2.155   4.331   0.033  HO6  GN4  28  
GN4  H3   H12  H  0  1  N  N  N  47.114  46.032  56.433   0.567  -0.675  -1.683  H3   GN4  29  
GN4  H4   H13  H  0  1  N  N  N  45.919  43.442  55.370  -0.745  -0.034   1.000  H4   GN4  30  
GN4  H14  H14  H  0  1  N  N  N  50.050  42.690  53.208  -5.021  -1.878  -0.442  H14  GN4  31  
GN4  H15  H15  H  0  1  N  N  N  47.609  41.211  55.396  -4.066   0.962   0.553  H15  GN4  32  
GN4  HO3  H16  H  0  1  N  Y  N  48.071  44.632  58.037   1.080  -2.687  -0.498  HO3  GN4  33  
GN4  O1   O1   O  0  1  N  Y  S  43.031  46.019  56.566   3.110   1.835   0.269  O1   GN4  34  
GN4  HO1  H7   H  0  1  N  Y  N  42.633  46.353  57.362   3.252   2.774   0.089  HO1  GN4  35  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GN4  O6   C6   SING  N  N   1  
GN4  O46  P45  DOUB  N  N   2  
GN4  C6   C5   SING  N  N   3  
GN4  O47  P45  SING  N  N   4  
GN4  P45  O4   SING  N  N   5  
GN4  P45  O48  SING  N  N   6  
GN4  O4   C4   SING  N  N   7  
GN4  C5   C4   SING  N  N   8  
GN4  C5   O5   SING  N  N   9  
GN4  C4   C3   SING  N  N  10  
GN4  O5   C1   SING  N  N  11  
GN4  C3   O3   SING  N  N  12  
GN4  C3   C2   SING  N  N  13  
GN4  C1   C2   SING  N  N  14  
GN4  C2   N2   SING  N  N  15  
GN4  N2   C7   SING  N  N  16  
GN4  O7   C7   DOUB  N  N  17  
GN4  C7   C8   SING  N  N  18  
GN4  C8   H81  SING  N  N  19  
GN4  C8   H82  SING  N  N  20  
GN4  C8   H83  SING  N  N  21  
GN4  N2   HN2  SING  N  N  22  
GN4  C2   H2   SING  N  N  23  
GN4  C1   H1   SING  N  N  24  
GN4  C5   H5   SING  N  N  25  
GN4  C6   H61  SING  N  N  26  
GN4  C6   H62  SING  N  N  27  
GN4  O6   HO6  SING  N  N  28  
GN4  C3   H3   SING  N  N  29  
GN4  C4   H4   SING  N  N  30  
GN4  O47  H14  SING  N  N  31  
GN4  O48  H15  SING  N  N  32  
GN4  O3   HO3  SING  N  N  33  
GN4  C1   O1   SING  N  N  34  
GN4  O1   HO1  SING  N  N  35  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GN4  SMILES            ACDLabs               12.01  "O=C(C)NC1C(O)OC(C(C1O)OP(O)(O)=O)CO"  
GN4  InChI             InChI                 1.03   "InChI=1S/C8H16NO9P/c1-3(11)9-5-6(12)7(18-19(14,15)16)4(2-10)17-8(5)13/h4-8,10,12-13H,2H2,1H3,(H,9,11)(H2,14,15,16)/t4-,5-,6-,7-,8-/m1/s1"  
GN4  InChIKey          InChI                 1.03   DHZPCJWLUQMUPF-FMDGEEDCSA-N  
GN4  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)N[C@H]1[C@H](O)O[C@H](CO)[C@@H](O[P](O)(O)=O)[C@@H]1O"  
GN4  SMILES            CACTVS                3.385  "CC(=O)N[CH]1[CH](O)O[CH](CO)[CH](O[P](O)(O)=O)[CH]1O"  
GN4  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O)CO)OP(=O)(O)O)O"  
GN4  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(=O)NC1C(C(C(OC1O)CO)OP(=O)(O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GN4  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-(acetylamino)-2-deoxy-4-O-phosphono-beta-D-glucopyranose"  
GN4  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "[(2~{R},3~{S},4~{R},5~{R},6~{R})-5-acetamido-2-(hydroxymethyl)-4,6-bis(oxidanyl)oxan-3-yl] dihydrogen phosphate"  
#
_pdbx_chem_comp_related.comp_id            GN4
_pdbx_chem_comp_related.related_comp_id    BM7
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  GN4  C1   BM7  C1   "Carbohydrate core"  
 2  GN4  C2   BM7  C2   "Carbohydrate core"  
 3  GN4  C3   BM7  C3   "Carbohydrate core"  
 4  GN4  C4   BM7  C4   "Carbohydrate core"  
 5  GN4  C5   BM7  C5   "Carbohydrate core"  
 6  GN4  C6   BM7  C6   "Carbohydrate core"  
 7  GN4  C7   BM7  C7   "Carbohydrate core"  
 8  GN4  C8   BM7  C8   "Carbohydrate core"  
 9  GN4  N2   BM7  N2   "Carbohydrate core"  
10  GN4  O1   BM7  O1   "Carbohydrate core"  
11  GN4  O3   BM7  O3   "Carbohydrate core"  
12  GN4  O4   BM7  O4   "Carbohydrate core"  
13  GN4  O5   BM7  O5   "Carbohydrate core"  
14  GN4  O6   BM7  O6   "Carbohydrate core"  
15  GN4  O7   BM7  O7   "Carbohydrate core"  
16  GN4  H81  BM7  H81  "Carbohydrate core"  
17  GN4  H62  BM7  H62  "Carbohydrate core"  
18  GN4  HO6  BM7  HO6  "Carbohydrate core"  
19  GN4  H3   BM7  H3   "Carbohydrate core"  
20  GN4  H4   BM7  H4   "Carbohydrate core"  
21  GN4  HO3  BM7  HO3  "Carbohydrate core"  
22  GN4  H82  BM7  H82  "Carbohydrate core"  
23  GN4  H83  BM7  H83  "Carbohydrate core"  
24  GN4  HN2  BM7  HN2  "Carbohydrate core"  
25  GN4  H2   BM7  H2   "Carbohydrate core"  
26  GN4  H1   BM7  H1   "Carbohydrate core"  
27  GN4  HO1  BM7  HO1  "Carbohydrate core"  
28  GN4  H5   BM7  H5   "Carbohydrate core"  
29  GN4  H61  BM7  H61  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
GN4  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
GN4  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
GN4  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
GN4  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GN4  "Create component"          2018-05-17  RCSB  
GN4  "Initial release"           2018-09-05  RCSB  
GN4  "Other modification"        2020-07-03  RCSB  
GN4  "Modify parent residue"     2020-07-17  RCSB  
GN4  "Modify name"               2020-07-17  RCSB  
GN4  "Modify synonyms"           2020-07-17  RCSB  
GN4  "Modify internal type"      2020-07-17  RCSB  
GN4  "Modify linking type"       2020-07-17  RCSB  
GN4  "Modify atom id"            2020-07-17  RCSB  
GN4  "Modify component atom id"  2020-07-17  RCSB  
GN4  "Modify leaving atom flag"  2020-07-17  RCSB  
##
