data_GH4
# 
_chem_comp.id                                    GH4 
_chem_comp.name                                  "4-[1,3-benzodioxol-5-ylmethyl(2-phenoxyethyl)amino]-5-fluoropyrimidine-2-carbonitrile" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H19 F N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-12-21 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        394.399 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GH4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5MQY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GH4 C2  C1  C 0 1 Y N N N N N 56.610 45.062 19.700 1.952  -3.103 -0.777 C2  GH4 1  
GH4 C3  C2  C 0 1 Y N N N N N 57.593 45.704 20.380 0.845  -3.833 -0.375 C3  GH4 2  
GH4 C5  C3  C 0 1 N N N N N N 59.108 46.290 21.889 -0.562 -5.186 0.710  C5  GH4 3  
GH4 C9  C4  C 0 1 Y N N N N N 55.318 47.252 19.542 0.557  -1.193 -1.160 C9  GH4 4  
GH4 C10 C5  C 0 1 N N N N N N 54.127 48.008 19.056 0.402  0.242  -1.594 C10 GH4 5  
GH4 C11 C6  C 0 1 Y N N N N N 53.669 52.589 20.061 -4.343 1.957  -0.906 C11 GH4 6  
GH4 C12 C7  C 0 1 Y N N N N N 54.312 53.420 20.991 -5.702 1.712  -0.938 C12 GH4 7  
GH4 C13 C8  C 0 1 Y N N N N N 55.490 53.983 20.517 -6.342 1.211  0.180  C13 GH4 8  
GH4 C14 C9  C 0 1 Y N N N N N 56.118 53.747 19.377 -5.624 0.954  1.334  C14 GH4 9  
GH4 C21 C10 C 0 1 Y N N N N N 53.881 47.771 16.547 1.666  1.220  0.135  C21 GH4 10 
GH4 C28 C11 C 0 1 Y N N N N N 53.304 46.419 16.472 1.948  0.670  1.392  C28 GH4 11 
GH4 C1  C12 C 0 1 Y N N N N N 55.501 45.842 19.340 1.806  -1.785 -1.168 C1  GH4 12 
GH4 O4  O1  O 0 1 N N N N N N 58.811 45.331 20.880 0.720  -5.123 0.056  O4  GH4 13 
GH4 O6  O2  O 0 1 N N N N N N 58.553 47.457 21.293 -1.329 -4.155 0.061  O6  GH4 14 
GH4 C7  C13 C 0 1 Y N N N N N 57.438 47.098 20.586 -0.414 -3.238 -0.372 C7  GH4 15 
GH4 C8  C14 C 0 1 Y N N N N N 56.287 47.835 20.205 -0.554 -1.919 -0.771 C8  GH4 16 
GH4 C15 C15 C 0 1 Y N N N N N 55.580 52.855 18.498 -4.265 1.198  1.372  C15 GH4 17 
GH4 C16 C16 C 0 1 Y N N N N N 54.267 52.369 18.837 -3.619 1.695  0.249  C16 GH4 18 
GH4 O17 O3  O 0 1 N N N N N N 53.534 51.473 18.020 -2.282 1.936  0.284  O17 GH4 19 
GH4 C18 C17 C 0 1 N N N N N N 54.043 50.914 16.913 -1.662 2.330  -0.942 C18 GH4 20 
GH4 C19 C18 C 0 1 N N N N N N 55.018 49.739 17.411 -0.150 2.438  -0.736 C19 GH4 21 
GH4 N20 N1  N 0 1 N N N N N N 54.336 48.381 17.630 0.396  1.114  -0.411 N20 GH4 22 
GH4 N22 N2  N 0 1 Y N N N N N 54.001 48.364 15.380 2.632  1.849  -0.523 N22 GH4 23 
GH4 N23 N3  N 0 1 N N N N N N 53.405 48.183 11.876 6.089  2.772  -0.275 N23 GH4 24 
GH4 C24 C19 C 0 1 N N N N N N 53.779 48.610 13.043 4.899  2.661  -0.765 C24 GH4 25 
GH4 C25 C20 C 0 1 Y N N N N N 53.596 47.834 14.212 3.848  1.952  -0.003 C25 GH4 26 
GH4 N26 N4  N 0 1 Y N N N N N 53.043 46.612 14.089 4.145  1.437  1.182  N26 GH4 27 
GH4 C27 C21 C 0 1 Y N N N N N 52.948 45.984 15.241 3.231  0.801  1.896  C27 GH4 28 
GH4 F29 F1  F 0 1 N N N N N N 53.160 45.644 17.605 0.991  0.026  2.095  F29 GH4 29 
GH4 H1  H1  H 0 1 N N N N N N 56.677 44.013 19.451 2.929  -3.562 -0.781 H1  GH4 30 
GH4 H2  H2  H 0 1 N N N N N N 58.616 46.045 22.842 -1.023 -6.161 0.554  H2  GH4 31 
GH4 H3  H3  H 0 1 N N N N N N 60.191 46.390 22.051 -0.459 -4.977 1.775  H3  GH4 32 
GH4 H4  H4  H 0 1 N N N N N N 53.997 48.918 19.660 1.234  0.517  -2.243 H4  GH4 33 
GH4 H5  H5  H 0 1 N N N N N N 53.230 47.378 19.144 -0.536 0.359  -2.136 H5  GH4 34 
GH4 H6  H6  H 0 1 N N N N N N 52.721 52.129 20.299 -3.843 2.348  -1.780 H6  GH4 35 
GH4 H7  H7  H 0 1 N N N N N N 53.927 53.605 21.983 -6.264 1.911  -1.838 H7  GH4 36 
GH4 H8  H8  H 0 1 N N N N N N 55.955 54.710 21.166 -7.405 1.020  0.152  H8  GH4 37 
GH4 H9  H9  H 0 1 N N N N N N 57.043 54.254 19.146 -6.127 0.563  2.206  H9  GH4 38 
GH4 H10 H10 H 0 1 N N N N N N 54.690 45.321 18.854 2.669  -1.217 -1.481 H10 GH4 39 
GH4 H11 H11 H 0 1 N N N N N N 56.209 48.881 20.462 -1.528 -1.454 -0.765 H11 GH4 40 
GH4 H12 H12 H 0 1 N N N N N N 56.102 52.535 17.609 -3.705 0.994  2.272  H12 GH4 41 
GH4 H13 H13 H 0 1 N N N N N N 54.609 51.660 16.335 -1.872 1.587  -1.711 H13 GH4 42 
GH4 H14 H14 H 0 1 N N N N N N 53.237 50.501 16.289 -2.056 3.298  -1.253 H14 GH4 43 
GH4 H15 H15 H 0 1 N N N N N N 55.807 49.607 16.656 0.316  2.809  -1.650 H15 GH4 44 
GH4 H16 H16 H 0 1 N N N N N N 55.471 50.051 18.364 0.058  3.127  0.083  H16 GH4 45 
GH4 H17 H17 H 0 1 N N N N N N 52.991 47.274 11.925 6.293  2.390  0.594  H17 GH4 46 
GH4 H18 H18 H 0 1 N N N N N N 54.242 49.582 13.124 4.672  3.086  -1.732 H18 GH4 47 
GH4 H19 H19 H 0 1 N N N N N N 52.530 44.989 15.199 3.484  0.385  2.861  H19 GH4 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GH4 N23 C24 DOUB N N 1  
GH4 C24 C25 SING N N 2  
GH4 N26 C25 DOUB Y N 3  
GH4 N26 C27 SING Y N 4  
GH4 C25 N22 SING Y N 5  
GH4 C27 C28 DOUB Y N 6  
GH4 N22 C21 DOUB Y N 7  
GH4 C28 C21 SING Y N 8  
GH4 C28 F29 SING N N 9  
GH4 C21 N20 SING N N 10 
GH4 C18 C19 SING N N 11 
GH4 C18 O17 SING N N 12 
GH4 C19 N20 SING N N 13 
GH4 N20 C10 SING N N 14 
GH4 O17 C16 SING N N 15 
GH4 C15 C16 DOUB Y N 16 
GH4 C15 C14 SING Y N 17 
GH4 C16 C11 SING Y N 18 
GH4 C10 C9  SING N N 19 
GH4 C1  C9  DOUB Y N 20 
GH4 C1  C2  SING Y N 21 
GH4 C14 C13 DOUB Y N 22 
GH4 C9  C8  SING Y N 23 
GH4 C2  C3  DOUB Y N 24 
GH4 C11 C12 DOUB Y N 25 
GH4 C8  C7  DOUB Y N 26 
GH4 C3  C7  SING Y N 27 
GH4 C3  O4  SING N N 28 
GH4 C13 C12 SING Y N 29 
GH4 C7  O6  SING N N 30 
GH4 O4  C5  SING N N 31 
GH4 O6  C5  SING N N 32 
GH4 C2  H1  SING N N 33 
GH4 C5  H2  SING N N 34 
GH4 C5  H3  SING N N 35 
GH4 C10 H4  SING N N 36 
GH4 C10 H5  SING N N 37 
GH4 C11 H6  SING N N 38 
GH4 C12 H7  SING N N 39 
GH4 C13 H8  SING N N 40 
GH4 C14 H9  SING N N 41 
GH4 C1  H10 SING N N 42 
GH4 C8  H11 SING N N 43 
GH4 C15 H12 SING N N 44 
GH4 C18 H13 SING N N 45 
GH4 C18 H14 SING N N 46 
GH4 C19 H15 SING N N 47 
GH4 C19 H16 SING N N 48 
GH4 N23 H17 SING N N 49 
GH4 C24 H18 SING N N 50 
GH4 C27 H19 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GH4 InChI            InChI                1.03  "InChI=1S/C21H19FN4O3/c22-17-12-24-20(11-23)25-21(17)26(8-9-27-16-4-2-1-3-5-16)13-15-6-7-18-19(10-15)29-14-28-18/h1-7,10-12,23H,8-9,13-14H2/b23-11+" 
GH4 InChIKey         InChI                1.03  WKKCNOKGPKWFJS-FOKLQQMPSA-N                                                                                                                          
GH4 SMILES_CANONICAL CACTVS               3.385 "Fc1cnc(C=N)nc1N(CCOc2ccccc2)Cc3ccc4OCOc4c3"                                                                                                         
GH4 SMILES           CACTVS               3.385 "Fc1cnc(C=N)nc1N(CCOc2ccccc2)Cc3ccc4OCOc4c3"                                                                                                         
GH4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "[H]/N=C/c1ncc(c(n1)N(CCOc2ccccc2)Cc3ccc4c(c3)OCO4)F"                                                                                                
GH4 SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)OCCN(Cc2ccc3c(c2)OCO3)c4c(cnc(n4)C=N)F"                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           GH4 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "~{N}-(1,3-benzodioxol-5-ylmethyl)-5-fluoranyl-2-(iminomethyl)-~{N}-(2-phenoxyethyl)pyrimidin-4-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GH4 "Create component" 2016-12-21 EBI  
GH4 "Initial release"  2017-03-22 RCSB 
GH4 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            GH4 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C24 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
