data_DZ4
# 
_chem_comp.id                                    DZ4 
_chem_comp.name                                  "2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H17 N6 O11 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-04-29 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        490.197 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DZ4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3MR2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DZ4 N1     N1   N 0 1 Y N N -24.207 49.699 6.436 7.821  -2.008 0.572  N1   DZ4 1  
DZ4 C2     C2   C 0 1 Y N N -23.086 49.961 5.755 7.744  -0.731 0.899  C2   DZ4 2  
DZ4 N3     N3   N 0 1 Y N N -22.252 49.002 5.385 6.634  -0.035 0.773  N3   DZ4 3  
DZ4 C4     C4   C 0 1 Y N N -22.520 47.721 5.673 5.529  -0.603 0.301  C4   DZ4 4  
DZ4 C5     C5   C 0 1 Y N N -23.691 47.371 6.410 5.560  -1.960 -0.062 C5   DZ4 5  
DZ4 C6     C6   C 0 1 Y N N -24.546 48.427 6.771 6.768  -2.660 0.091  C6   DZ4 6  
DZ4 N6     N6   N 0 1 N N N -25.712 48.181 7.472 6.858  -3.999 -0.250 N6   DZ4 7  
DZ4 N7     N7   N 0 1 Y N N -23.682 46.024 6.550 4.320  -2.282 -0.505 N7   DZ4 8  
DZ4 C8     C8   C 0 1 Y N N -22.612 45.551 5.982 3.550  -1.236 -0.438 C8   DZ4 9  
DZ4 N9     N9   N 0 1 Y N N -21.868 46.581 5.431 4.249  -0.174 0.053  N9   DZ4 10 
DZ4 PA     PA   P 0 1 N N N -21.547 41.518 5.831 -2.084 1.944  0.630  PA   DZ4 11 
DZ4 PB     PB   P 0 1 N N N -18.921 41.227 7.203 -4.136 0.125  0.207  PB   DZ4 12 
DZ4 PG     PG   P 0 1 N N N -19.161 38.687 8.258 -5.823 -2.246 -0.358 PG   DZ4 13 
DZ4 "C1'"  C1*  C 0 1 N N R -20.634 46.513 4.692 3.730  1.178  0.276  C1*  DZ4 14 
DZ4 O1A    O1A  O 0 1 N N N -21.270 40.509 5.100 -2.667 2.854  -0.382 O1A  DZ4 15 
DZ4 O1B    O1B  O 0 1 N N N -18.540 40.869 6.041 -4.704 0.439  1.537  O1B  DZ4 16 
DZ4 O1G    O1G  O 0 1 N N N -19.818 38.448 7.133 -6.780 -1.458 -1.167 O1G  DZ4 17 
DZ4 "C2'"  C2*  C 0 1 N N N -19.472 46.346 5.687 4.041  2.067  -0.944 C2*  DZ4 18 
DZ4 O2A    O2A  O 0 1 N N N -22.845 41.639 6.332 -2.683 2.301  2.081  O2A  DZ4 19 
DZ4 O2B    O2B  O 0 1 N N N -18.331 42.292 7.586 -4.788 1.099  -0.898 O2B  DZ4 20 
DZ4 O2G    O2G  O 0 1 N N N -18.124 37.875 8.468 -5.497 -3.631 -1.111 O2G  DZ4 21 
DZ4 "C3'"  C3*  C 0 1 N N S -19.044 44.905 5.607 2.651  2.550  -1.425 C3*  DZ4 22 
DZ4 "O3'"  O3*  O 0 1 N N N -17.768 44.571 5.830 2.693  3.927  -1.804 O3*  DZ4 23 
DZ4 N3A    N3A  N 0 1 N N N -20.543 41.569 7.067 -2.469 0.352  0.241  N3A  DZ4 24 
DZ4 O3B    O3B  O 0 1 N N N -18.688 40.142 8.262 -4.462 -1.406 -0.168 O3B  DZ4 25 
DZ4 O3G    O3G  O 0 1 N N N -20.022 38.534 9.299 -6.467 -2.557 1.084  O3G  DZ4 26 
DZ4 "C4'"  C4*  C 0 1 N N R -19.672 44.527 4.259 1.781  2.352  -0.157 C4*  DZ4 27 
DZ4 "O4'"  O4*  O 0 1 N N N -20.600 45.461 3.871 2.300  1.135  0.420  O4*  DZ4 28 
DZ4 "C5'"  C5*  C 0 1 N N N -20.181 43.084 4.336 0.308  2.183  -0.536 C5*  DZ4 29 
DZ4 "O5'"  O5*  O 0 1 N N N -21.364 42.799 5.021 -0.484 2.119  0.652  O5*  DZ4 30 
DZ4 H2     H2   H 0 1 N N N -22.855 50.985 5.500 8.625  -0.240 1.286  H2   DZ4 31 
DZ4 HN6    HN6  H 0 1 N N N -26.183 49.045 7.650 7.698  -4.471 -0.139 HN6  DZ4 32 
DZ4 HN6A   HN6A H 0 0 N N N -26.305 47.583 6.933 6.082  -4.464 -0.599 HN6A DZ4 33 
DZ4 H8     H8   H 0 1 N N N -22.342 44.506 5.945 2.510  -1.212 -0.729 H8   DZ4 34 
DZ4 "H1'"  H1*  H 0 1 N N N -20.551 47.436 4.100 4.182  1.606  1.171  H1*  DZ4 35 
DZ4 "H2'"  H2*  H 0 1 N N N -18.637 47.011 5.419 4.659  2.915  -0.650 H2*  DZ4 36 
DZ4 "H2'A" H2*A H 0 0 N N N -19.801 46.594 6.707 4.536  1.486  -1.722 H2*A DZ4 37 
DZ4 HO2A   HO2A H 0 0 N N N -23.369 40.904 6.036 -2.345 1.743  2.795  HO2A DZ4 38 
DZ4 HO2B   HO2B H 0 0 N N N -17.731 42.583 6.909 -4.461 0.950  -1.795 HO2B DZ4 39 
DZ4 HO2G   HO2G H 0 0 N N N -18.052 37.260 7.747 -6.273 -4.190 -1.259 HO2G DZ4 40 
DZ4 "H3'"  H3*  H 0 1 N N N -19.383 44.305 6.464 2.288  1.933  -2.247 H3*  DZ4 41 
DZ4 "HO3'" HO3* H 0 0 N N N -17.666 43.631 5.741 3.295  4.115  -2.537 HO3* DZ4 42 
DZ4 HN3A   HN3A H 0 0 N N N -20.585 42.530 7.341 -2.049 0.083  -0.637 HN3A DZ4 43 
DZ4 HO3G   HO3G H 0 0 N N N -20.880 38.294 8.968 -5.893 -3.071 1.668  HO3G DZ4 44 
DZ4 "H4'"  H4*  H 0 1 N N N -18.924 44.546 3.452 1.907  3.189  0.529  H4*  DZ4 45 
DZ4 "H5'"  H5*  H 0 1 N N N -20.344 42.761 3.297 -0.011 3.033  -1.140 H5*  DZ4 46 
DZ4 "H5'A" H5*A H 0 0 N N N -19.390 42.507 4.838 0.183  1.263  -1.106 H5*A DZ4 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DZ4 C2    N1     DOUB Y N 1  
DZ4 N1    C6     SING Y N 2  
DZ4 N3    C2     SING Y N 3  
DZ4 C2    H2     SING N N 4  
DZ4 N3    C4     DOUB Y N 5  
DZ4 N9    C4     SING Y N 6  
DZ4 C4    C5     SING Y N 7  
DZ4 C5    N7     SING Y N 8  
DZ4 C5    C6     DOUB Y N 9  
DZ4 C6    N6     SING N N 10 
DZ4 N6    HN6    SING N N 11 
DZ4 N6    HN6A   SING N N 12 
DZ4 C8    N7     DOUB Y N 13 
DZ4 N9    C8     SING Y N 14 
DZ4 C8    H8     SING N N 15 
DZ4 "C1'" N9     SING N N 16 
DZ4 "O5'" PA     SING N N 17 
DZ4 O1A   PA     DOUB N N 18 
DZ4 PA    O2A    SING N N 19 
DZ4 PA    N3A    SING N N 20 
DZ4 O1B   PB     DOUB N N 21 
DZ4 N3A   PB     SING N N 22 
DZ4 PB    O2B    SING N N 23 
DZ4 PB    O3B    SING N N 24 
DZ4 O1G   PG     DOUB N N 25 
DZ4 PG    O3B    SING N N 26 
DZ4 PG    O2G    SING N N 27 
DZ4 PG    O3G    SING N N 28 
DZ4 "O4'" "C1'"  SING N N 29 
DZ4 "C1'" "C2'"  SING N N 30 
DZ4 "C1'" "H1'"  SING N N 31 
DZ4 "C3'" "C2'"  SING N N 32 
DZ4 "C2'" "H2'"  SING N N 33 
DZ4 "C2'" "H2'A" SING N N 34 
DZ4 O2A   HO2A   SING N N 35 
DZ4 O2B   HO2B   SING N N 36 
DZ4 O2G   HO2G   SING N N 37 
DZ4 "C4'" "C3'"  SING N N 38 
DZ4 "C3'" "O3'"  SING N N 39 
DZ4 "C3'" "H3'"  SING N N 40 
DZ4 "O3'" "HO3'" SING N N 41 
DZ4 N3A   HN3A   SING N N 42 
DZ4 O3G   HO3G   SING N N 43 
DZ4 "O4'" "C4'"  SING N N 44 
DZ4 "C4'" "C5'"  SING N N 45 
DZ4 "C4'" "H4'"  SING N N 46 
DZ4 "C5'" "O5'"  SING N N 47 
DZ4 "C5'" "H5'"  SING N N 48 
DZ4 "C5'" "H5'A" SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DZ4 SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)NP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)CC3O"                                                                                                                                     
DZ4 SMILES_CANONICAL CACTVS               3.370 "Nc1ncnc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)N[P](O)(=O)O[P](O)(O)=O)O3"                                                                                                                
DZ4 SMILES           CACTVS               3.370 "Nc1ncnc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(=O)N[P](O)(=O)O[P](O)(O)=O)O3"                                                                                                                    
DZ4 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)[C@H]3C[C@@H]([C@H](O3)CO[P@@](=O)(N[P@@](=O)(O)OP(=O)(O)O)O)O)N"                                                                                                          
DZ4 SMILES           "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)C3CC(C(O3)COP(=O)(NP(=O)(O)OP(=O)(O)O)O)O)N"                                                                                                                               
DZ4 InChI            InChI                1.03  "InChI=1S/C10H17N6O11P3/c11-9-8-10(13-3-12-9)16(4-14-8)7-1-5(17)6(26-7)2-25-28(18,19)15-29(20,21)27-30(22,23)24/h3-7,17H,1-2H2,(H2,11,12,13)(H2,22,23,24)(H3,15,18,19,20,21)/t5-,6+,7+/m0/s1" 
DZ4 InChIKey         InChI                1.03  WKIPJDSLGCBQCU-RRKCRQDMSA-N                                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DZ4 "SYSTEMATIC NAME" ACDLabs              12.01 "2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine"                             
DZ4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3S,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-N-[hydroxy(phosphonooxy)phosphoryl]phosphonamidic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DZ4 "Create component"     2010-04-29 RCSB 
DZ4 "Modify aromatic_flag" 2011-06-04 RCSB 
DZ4 "Modify descriptor"    2011-06-04 RCSB 
# 
