data_DK4
#

_chem_comp.id                                   DK4
_chem_comp.name                                 "1-(3-deoxy-3-fluoro-beta-D-glucopyranosyl)-5-fluoropyrimidine-2,4(1H,3H)-dione"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C10 H12 F2 N2 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;1-(3-deoxy-3-fluoro-beta-D-glucosyl)-5-fluoropyrimidine-2,4(1H,3H)-dione;
1-(3-deoxy-3-fluoro-D-glucosyl)-5-fluoropyrimidine-2,4(1H,3H)-dione;
1-(3-deoxy-3-fluoro-glucosyl)-5-fluoropyrimidine-2,4(1H,3H)-dione
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-01-13
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       294.209
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DK4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3L7C
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  DK4  "1-(3-deoxy-3-fluoro-beta-D-glucosyl)-5-fluoropyrimidine-2,4(1H,3H)-dione"  PDB  ?  
2  DK4  "1-(3-deoxy-3-fluoro-D-glucosyl)-5-fluoropyrimidine-2,4(1H,3H)-dione"       PDB  ?  
3  DK4  "1-(3-deoxy-3-fluoro-glucosyl)-5-fluoropyrimidine-2,4(1H,3H)-dione"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DK4  C1   C1   C  0  1  N  N  R  33.343  22.903  27.789  -0.350   0.149   0.558  C1   DK4   1  
DK4  N1   N1   N  0  1  N  N  N  34.178  23.597  28.793   1.094   0.032   0.343  N1   DK4   2  
DK4  C2   C2   C  0  1  N  N  S  33.782  23.105  26.324  -0.883   1.366  -0.203  C2   DK4   3  
DK4  N2   N2   N  0  1  N  N  N  34.350  24.930  30.810   3.269   0.077   1.212  N2   DK4   4  
DK4  O2   O2   O  0  1  N  N  N  33.849  24.503  26.012  -0.276   2.554   0.309  O2   DK4   5  
DK4  C3   C3   C  0  1  N  N  S  32.816  22.378  25.364  -2.402   1.447  -0.022  C3   DK4   6  
DK4  F3   F3   F  0  1  N  N  N  33.324  22.363  24.078  -2.906   2.514  -0.774  F3   DK4   7  
DK4  C4   C4   C  0  1  N  N  R  32.489  20.950  25.858  -3.033   0.137  -0.504  C4   DK4   8  
DK4  O4   O4   O  0  1  N  N  N  31.291  20.492  25.239  -4.442   0.172  -0.273  O4   DK4   9  
DK4  C5   C5   C  0  1  N  N  R  32.312  20.865  27.399  -2.417  -1.032   0.269  C5   DK4  10  
DK4  O5   O5   O  0  1  N  N  N  33.404  21.503  28.084  -1.000  -1.031   0.083  O5   DK4  11  
DK4  C6   C6   C  0  1  N  N  N  32.265  19.423  27.875  -2.998  -2.349  -0.249  C6   DK4  12  
DK4  O6   O6   O  0  1  N  N  N  33.355  18.721  27.268  -2.513  -3.431   0.549  O6   DK4  13  
DK4  C7   C7   C  0  1  N  N  N  35.582  23.570  28.699   1.575  -0.225  -0.915  C7   DK4  14  
DK4  C8   C8   C  0  1  N  N  N  36.357  24.223  29.655   2.907  -0.333  -1.113  C8   DK4  15  
DK4  F8   F8   F  0  1  N  N  N  37.693  24.189  29.540   3.398  -0.586  -2.345  F8   DK4  16  
DK4  C9   C9   C  0  1  N  N  N  35.744  24.909  30.711   3.782  -0.175  -0.009  C9   DK4  17  
DK4  O9   O9   O  0  1  N  N  N  36.407  25.497  31.567   4.987  -0.267  -0.162  O9   DK4  18  
DK4  C10  C10  C  0  1  N  N  N  33.558  24.273  29.858   1.938   0.184   1.380  C10  DK4  19  
DK4  O10  O10  O  0  1  N  N  N  32.333  24.306  29.958   1.490   0.417   2.487  O10  DK4  20  
DK4  H1   H1   H  0  1  N  N  N  32.332  23.331  27.862  -0.550   0.271   1.623  H1   DK4  21  
DK4  H2   H2   H  0  1  N  N  N  34.785  22.672  26.196  -0.647   1.264  -1.263  H2   DK4  22  
DK4  HN2  HN2  H  0  1  N  N  N  33.914  25.418  31.566   3.862   0.186   1.972  HN2  DK4  23  
DK4  HO2  HO2  H  0  1  N  Y  N  34.120  24.614  25.108  -0.568   3.365  -0.129  HO2  DK4  24  
DK4  H3   H3   H  0  1  N  N  N  31.870  22.939  25.350  -2.636   1.598   1.031  H3   DK4  25  
DK4  H4   H4   H  0  1  N  N  N  33.347  20.319  25.584  -2.840   0.010  -1.570  H4   DK4  26  
DK4  HO4  HO4  H  0  1  N  Y  N  31.092  19.615  25.544  -4.898   0.893  -0.730  HO4  DK4  27  
DK4  H5   H5   H  0  1  N  N  N  31.363  21.373  27.627  -2.644  -0.926   1.330  H5   DK4  28  
DK4  H61  H6   H  0  1  N  N  N  32.358  19.386  28.970  -4.086  -2.314  -0.190  H61  DK4  29  
DK4  H62  H6A  H  0  1  N  N  N  31.311  18.961  27.581  -2.695  -2.498  -1.285  H62  DK4  30  
DK4  HO6  HO6  H  0  1  N  Y  N  33.346  17.814  27.552  -2.841  -4.299   0.277  HO6  DK4  31  
DK4  H7   H7   H  0  1  N  N  N  36.059  23.043  27.886   0.892  -0.342  -1.743  H7   DK4  32  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DK4  C2   C1   SING  N  N   1  
DK4  C1   O5   SING  N  N   2  
DK4  C1   N1   SING  N  N   3  
DK4  C1   H1   SING  N  N   4  
DK4  C7   N1   SING  N  N   5  
DK4  N1   C10  SING  N  N   6  
DK4  C3   C2   SING  N  N   7  
DK4  O2   C2   SING  N  N   8  
DK4  C2   H2   SING  N  N   9  
DK4  C10  N2   SING  N  N  10  
DK4  C9   N2   SING  N  N  11  
DK4  N2   HN2  SING  N  N  12  
DK4  O2   HO2  SING  N  N  13  
DK4  F3   C3   SING  N  N  14  
DK4  C3   C4   SING  N  N  15  
DK4  C3   H3   SING  N  N  16  
DK4  O4   C4   SING  N  N  17  
DK4  C4   C5   SING  N  N  18  
DK4  C4   H4   SING  N  N  19  
DK4  O4   HO4  SING  N  N  20  
DK4  C5   C6   SING  N  N  21  
DK4  C5   O5   SING  N  N  22  
DK4  C5   H5   SING  N  N  23  
DK4  O6   C6   SING  N  N  24  
DK4  C6   H61  SING  N  N  25  
DK4  C6   H62  SING  N  N  26  
DK4  O6   HO6  SING  N  N  27  
DK4  C7   C8   DOUB  N  N  28  
DK4  C7   H7   SING  N  N  29  
DK4  F8   C8   SING  N  N  30  
DK4  C8   C9   SING  N  N  31  
DK4  C9   O9   DOUB  N  N  32  
DK4  C10  O10  DOUB  N  N  33  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DK4  SMILES_CANONICAL  CACTVS                3.352  "OC[C@H]1O[C@H]([C@H](O)[C@@H](F)[C@@H]1O)N2C=C(F)C(=O)NC2=O"  
DK4  SMILES            CACTVS                3.352  "OC[CH]1O[CH]([CH](O)[CH](F)[CH]1O)N2C=C(F)C(=O)NC2=O"  
DK4  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "C1=C(C(=O)NC(=O)N1[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)F)O)F"  
DK4  SMILES            "OpenEye OEToolkits"  1.7.0  "C1=C(C(=O)NC(=O)N1C2C(C(C(C(O2)CO)O)F)O)F"  
DK4  InChI             InChI                 1.03   "InChI=1S/C10H12F2N2O6/c11-3-1-14(10(19)13-8(3)18)9-7(17)5(12)6(16)4(2-15)20-9/h1,4-7,9,15-17H,2H2,(H,13,18,19)/t4-,5+,6-,7-,9-/m1/s1"  
DK4  InChIKey          InChI                 1.03   BXHWKGLMPCAUQA-XLKNOJSPSA-N  
#
_pdbx_chem_comp_identifier.comp_id          DK4
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.6.1
_pdbx_chem_comp_identifier.identifier       "5-fluoro-1-[(2R,3S,4S,5R,6R)-4-fluoro-3,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]pyrimidine-2,4-dione"
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
DK4  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
DK4  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
DK4  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
DK4  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DK4  "Create component"          2010-01-13  RCSB  
DK4  "Modify descriptor"         2011-06-04  RCSB  
DK4  "Other modification"        2020-07-03  RCSB  
DK4  "Modify synonyms"           2020-07-17  RCSB  
DK4  "Modify internal type"      2020-07-17  RCSB  
DK4  "Modify linking type"       2020-07-17  RCSB  
DK4  "Modify atom id"            2020-07-17  RCSB  
DK4  "Modify component atom id"  2020-07-17  RCSB  
DK4  "Modify leaving atom flag"  2020-07-17  RCSB  
##
