data_D54
#

_chem_comp.id                                   D54
_chem_comp.name                                 "4-deoxy-L-threo-hex-5-ulosuronic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C6 H8 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        5-keto-4-deoxy-D-Galacturonate
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-03-23
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       176.124
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    D54
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3QPE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D54  OAA   OAA   O  0  1  N  N  N  30.609  4.044  -63.420  -4.196   0.178   0.229  OAA   D54   1  
D54  OAB   OAB   O  0  1  N  N  N  31.382  6.646  -64.450  -2.193  -1.469   0.467  OAB   D54   2  
D54  OAC   OAC   O  0  1  N  N  N  31.934  7.967  -59.586   1.519   1.533  -0.160  OAC   D54   3  
D54  OAD   OAD   O  0  1  N  N  N  28.718  7.163  -58.416   3.056  -1.515   0.030  OAD   D54   4  
D54  CAE   CAE   C  0  1  N  N  N  30.705  5.065  -62.732  -3.322   0.366  -0.584  CAE   D54   5  
D54  CAF   CAF   C  0  1  N  N  R  30.491  6.465  -63.344  -2.092  -0.504  -0.581  CAF   D54   6  
D54  CAG   CAG   C  0  1  N  N  S  30.711  7.514  -62.235  -0.853   0.365  -0.357  CAG   D54   7  
D54  CAH   CAH   C  0  1  N  N  N  30.141  7.016  -60.896   0.382  -0.529  -0.230  CAH   D54   8  
D54  CAI   CAI   C  0  1  N  N  N  30.766  7.583  -59.610   1.616   0.329  -0.131  CAI   D54   9  
D54  CAJ   CAJ   C  0  1  N  N  N  29.898  7.632  -58.335   2.958  -0.307   0.001  CAJ   D54  10  
D54  OAK   OAK   O  0  1  N  N  N  30.122  8.784  -62.592  -1.016   1.125   0.842  OAK   D54  11  
D54  OAL   OAL   O  0  1  N  N  N  30.422  8.121  -57.304   4.060   0.460   0.089  OAL   D54  12  
D54  HOAB  HOAB  H  0  0  N  N  N  31.663  5.798  -64.773  -2.272  -1.084   1.350  HOAB  D54  13  
D54  HAE   HAE   H  0  1  N  N  N  30.943  4.976  -61.682  -3.423   1.157  -1.312  HAE   D54  14  
D54  HAF   HAF   H  0  1  N  N  N  29.468  6.579  -63.732  -2.007  -1.016  -1.540  HAF   D54  15  
D54  HAG   HAG   H  0  1  N  N  N  31.795  7.661  -62.122  -0.726   1.042  -1.202  HAG   D54  16  
D54  HAH   HAH   H  0  1  N  N  N  29.075  7.286  -60.881   0.294  -1.144   0.666  HAH   D54  17  
D54  HAHA  HAHA  H  0  0  N  N  N  30.288  5.926  -60.870   0.456  -1.173  -1.106  HAHA  D54  18  
D54  HOAK  HOAK  H  0  0  N  N  N  30.272  9.410  -61.894  -1.134   0.586   1.637  HOAK  D54  19  
D54  HOAL  HOAL  H  0  0  N  N  N  29.800  8.088  -56.586   4.908   0.002   0.173  HOAL  D54  20  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D54  OAA  CAE   DOUB  N  N   1  
D54  OAB  CAF   SING  N  N   2  
D54  OAB  HOAB  SING  N  N   3  
D54  CAI  OAC   DOUB  N  N   4  
D54  OAD  CAJ   DOUB  N  N   5  
D54  CAF  CAE   SING  N  N   6  
D54  CAE  HAE   SING  N  N   7  
D54  CAF  CAG   SING  N  N   8  
D54  CAF  HAF   SING  N  N   9  
D54  OAK  CAG   SING  N  N  10  
D54  CAG  CAH   SING  N  N  11  
D54  CAG  HAG   SING  N  N  12  
D54  CAH  CAI   SING  N  N  13  
D54  CAH  HAH   SING  N  N  14  
D54  CAH  HAHA  SING  N  N  15  
D54  CAI  CAJ   SING  N  N  16  
D54  CAJ  OAL   SING  N  N  17  
D54  OAK  HOAK  SING  N  N  18  
D54  OAL  HOAL  SING  N  N  19  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D54  SMILES            ACDLabs               12.01  "O=CC(O)C(O)CC(=O)C(=O)O"  
D54  SMILES_CANONICAL  CACTVS                3.370  "O[C@@H](CC(=O)C(O)=O)[C@@H](O)C=O"  
D54  SMILES            CACTVS                3.370  "O[CH](CC(=O)C(O)=O)[CH](O)C=O"  
D54  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "C([C@@H]([C@H](C=O)O)O)C(=O)C(=O)O"  
D54  SMILES            "OpenEye OEToolkits"  1.7.0  "C(C(C(C=O)O)O)C(=O)C(=O)O"  
D54  InChI             InChI                 1.03   "InChI=1S/C6H8O6/c7-2-5(10)3(8)1-4(9)6(11)12/h2-3,5,8,10H,1H2,(H,11,12)/t3-,5-/m0/s1"  
D54  InChIKey          InChI                 1.03   IMUGYKFHMJLTOU-UCORVYFPSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
D54  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-deoxy-L-threo-hex-5-ulosuronic acid"  
D54  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "(4S,5R)-4,5-dihydroxy-2,6-dioxo-hexanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D54  "Create component"   2011-03-23  RCSB  
D54  "Modify descriptor"  2011-06-04  RCSB  
D54  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     D54
_pdbx_chem_comp_synonyms.name        5-keto-4-deoxy-D-Galacturonate
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
