data_B04
# 
_chem_comp.id                                    B04 
_chem_comp.name                                  "D-phenylalanyl-N-[(1-methylpyridinium-2-yl)methyl]-L-prolinamide" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H27 N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2011-06-22 
_chem_comp.pdbx_modified_date                    2012-06-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        367.465 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     B04 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3SI4 
_chem_comp.pdbx_subcomponent_list                "DPN PRO NNZ" 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
B04 N4   N4   N 0 1 N N N 16.696 -15.569 23.292 3.294  -1.870 -0.897 N    DPN 1  
B04 C3   C3   C 0 1 N N R 17.955 -14.847 23.299 2.951  -0.581 -0.279 CA   DPN 2  
B04 C5   C5   C 0 1 N N N 17.707 -13.492 22.693 1.525  -0.620 0.205  C    DPN 3  
B04 O7   O7   O 0 1 N N N 16.781 -12.797 23.092 0.976  -1.686 0.391  O    DPN 4  
B04 C2   C2   C 0 1 N N N 18.440 -14.765 24.743 3.885  -0.320 0.905  CB   DPN 5  
B04 C1   C1   C 0 1 Y N N 19.839 -14.206 24.803 5.297  -0.159 0.405  CG   DPN 6  
B04 C8   C8   C 0 1 Y N N 20.913 -14.886 24.231 5.768  1.092  0.054  CD1  DPN 7  
B04 C12  C12  C 0 1 Y N N 20.044 -13.002 25.460 6.124  -1.262 0.302  CD2  DPN 8  
B04 C9   C9   C 0 1 Y N N 22.194 -14.348 24.312 7.064  1.240  -0.404 CE1  DPN 9  
B04 C11  C11  C 0 1 Y N N 21.322 -12.466 25.534 7.418  -1.116 -0.161 CE2  DPN 10 
B04 C10  C10  C 0 1 Y N N 22.397 -13.135 24.961 7.889  0.136  -0.512 CZ   DPN 11 
B04 N6   N6   N 0 1 N N N 18.514 -13.072 21.716 0.859  0.530  0.433  N    PRO 12 
B04 C13  C13  C 0 1 N N S 18.263 -11.766 21.106 -0.530 0.637  0.904  CA   PRO 13 
B04 C14  C14  C 0 1 N N N 16.866 -11.752 20.541 -1.456 -0.041 -0.073 C    PRO 14 
B04 O15  O15  O 0 1 N N N 16.459 -12.710 19.899 -1.008 -0.565 -1.070 O    PRO 15 
B04 C19  C19  C 0 1 N N N 19.293 -11.662 19.988 -0.868 2.140  0.993  CB   PRO 16 
B04 C20  C20  C 0 1 N N N 20.351 -12.694 20.315 0.160  2.786  0.027  CG   PRO 17 
B04 C21  C21  C 0 1 N N N 19.653 -13.779 21.124 1.404  1.888  0.256  CD   PRO 18 
B04 N16  N16  N 0 1 N N N 16.090 -10.693 20.780 -2.783 -0.063 0.162  N16  NNZ 19 
B04 C17  C17  C 0 1 N N N 14.721 -10.533 20.295 -3.684 -0.722 -0.787 C17  NNZ 20 
B04 C18  C18  C 0 1 Y N N 13.729 -10.407 21.431 -5.104 -0.606 -0.296 C18  NNZ 21 
B04 C22  C22  C 0 1 Y N N 13.517 -9.173  22.041 -5.658 -1.638 0.438  C22  NNZ 22 
B04 C23  C23  C 0 1 Y N N 12.609 -9.077  23.086 -6.965 -1.521 0.886  C23  NNZ 23 
B04 C24  C24  C 0 1 Y N N 11.920 -10.216 23.487 -7.668 -0.367 0.578  C24  NNZ 24 
B04 C25  C25  C 0 1 Y N N 12.169 -11.419 22.838 -7.048 0.623  -0.161 C25  NNZ 25 
B04 N26  N26  N 1 1 Y N N 13.057 -11.494 21.838 -5.801 0.480  -0.566 N26  NNZ 26 
B04 C27  C27  C 0 1 N N N 13.292 -12.783 21.179 -5.175 1.554  -1.341 C27  NNZ 27 
B04 HN4  HN4  H 0 1 N N N 16.355 -15.637 22.354 3.197  -2.625 -0.235 H    DPN 28 
B04 HN4A HN4A H 0 0 N N N 16.836 -16.487 23.663 2.734  -2.036 -1.720 H2   DPN 29 
B04 H3   H3   H 0 1 N N N 18.737 -15.347 22.709 3.064  0.215  -1.014 HA   DPN 30 
B04 H2   H2   H 0 1 N N N 18.437 -15.774 25.181 3.838  -1.160 1.597  HB2  DPN 31 
B04 H2A  H2A  H 0 1 N N N 17.766 -14.108 25.312 3.575  0.591  1.417  HB3  DPN 32 
B04 H8   H8   H 0 1 N N N 20.752 -15.827 23.727 5.124  1.955  0.139  HD1  DPN 33 
B04 H12  H12  H 0 1 N N N 19.212 -12.483 25.913 5.757  -2.239 0.580  HD2  DPN 34 
B04 H9   H9   H 0 1 N N N 23.029 -14.872 23.871 7.432  2.217  -0.679 HE1  DPN 35 
B04 H11  H11  H 0 1 N N N 21.482 -11.525 26.039 8.062  -1.978 -0.245 HE2  DPN 36 
B04 H10  H10  H 0 1 N N N 23.389 -12.713 25.020 8.901  0.251  -0.871 HZ   DPN 37 
B04 H13  H13  H 0 1 N N N 18.345 -10.930 21.816 -0.624 0.174  1.886  HA   PRO 38 
B04 H19  H19  H 0 1 N N N 18.832 -11.871 19.011 -1.887 2.326  0.652  HB2  PRO 39 
B04 H19A H19A H 0 0 N N N 19.729 -10.653 19.951 -0.727 2.507  2.009  HB3  PRO 40 
B04 H20  H20  H 0 1 N N N 20.778 -13.115 19.393 -0.184 2.727  -1.005 HG2  PRO 41 
B04 H20A H20A H 0 0 N N N 21.165 -12.240 20.899 0.368  3.817  0.311  HG3  PRO 42 
B04 H21  H21  H 0 1 N N N 20.315 -14.199 21.895 1.941  2.200  1.151  HD2  PRO 43 
B04 H21A H21A H 0 0 N N N 19.326 -14.613 20.486 2.061  1.923  -0.613 HD3  PRO 44 
B04 HN16 HN16 H 0 0 N N N 16.474 -9.953  21.333 -3.142 0.357  0.960  HN16 NNZ 45 
B04 H17  H17  H 0 1 N N N 14.670 -9.622  19.681 -3.597 -0.243 -1.763 H17  NNZ 46 
B04 H17A H17A H 0 0 N N N 14.456 -11.414 19.693 -3.414 -1.774 -0.874 H17A NNZ 47 
B04 H22  H22  H 0 1 N N N 14.054 -8.299  21.704 -5.081 -2.523 0.660  H22  NNZ 48 
B04 H23  H23  H 0 1 N N N 12.440 -8.132  23.580 -7.425 -2.312 1.462  H23  NNZ 49 
B04 H24  H24  H 0 1 N N N 11.201 -10.166 24.292 -8.689 -0.243 0.910  H24  NNZ 50 
B04 H25  H25  H 0 1 N N N 11.638 -12.308 23.145 -7.589 1.525  -0.406 H25  NNZ 51 
B04 H27  H27  H 0 1 N N N 12.658 -13.553 21.642 -5.271 1.338  -2.405 H27  NNZ 52 
B04 H27A H27A H 0 0 N N N 13.045 -12.699 20.110 -5.670 2.500  -1.117 H27A NNZ 53 
B04 H27B H27B H 0 0 N N N 14.350 -13.064 21.290 -4.120 1.625  -1.078 H27B NNZ 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
B04 C1  C2   SING N N 1  
B04 C1  C8   DOUB Y N 2  
B04 C1  C12  SING Y N 3  
B04 C2  C3   SING N N 4  
B04 C3  N4   SING N N 5  
B04 C3  C5   SING N N 6  
B04 C5  N6   SING N N 7  
B04 C5  O7   DOUB N N 8  
B04 N6  C13  SING N N 9  
B04 N6  C21  SING N N 10 
B04 C8  C9   SING Y N 11 
B04 C9  C10  DOUB Y N 12 
B04 C10 C11  SING Y N 13 
B04 C11 C12  DOUB Y N 14 
B04 C13 C14  SING N N 15 
B04 C13 C19  SING N N 16 
B04 C14 O15  DOUB N N 17 
B04 C14 N16  SING N N 18 
B04 N16 C17  SING N N 19 
B04 C17 C18  SING N N 20 
B04 C18 C22  DOUB Y N 21 
B04 C18 N26  SING Y N 22 
B04 C19 C20  SING N N 23 
B04 C20 C21  SING N N 24 
B04 C22 C23  SING Y N 25 
B04 C23 C24  DOUB Y N 26 
B04 C24 C25  SING Y N 27 
B04 C25 N26  DOUB Y N 28 
B04 N26 C27  SING N N 29 
B04 C2  H2   SING N N 30 
B04 C2  H2A  SING N N 31 
B04 C3  H3   SING N N 32 
B04 N4  HN4  SING N N 33 
B04 N4  HN4A SING N N 34 
B04 C8  H8   SING N N 35 
B04 C9  H9   SING N N 36 
B04 C10 H10  SING N N 37 
B04 C11 H11  SING N N 38 
B04 C12 H12  SING N N 39 
B04 C13 H13  SING N N 40 
B04 N16 HN16 SING N N 41 
B04 C17 H17  SING N N 42 
B04 C17 H17A SING N N 43 
B04 C19 H19  SING N N 44 
B04 C19 H19A SING N N 45 
B04 C20 H20  SING N N 46 
B04 C20 H20A SING N N 47 
B04 C21 H21  SING N N 48 
B04 C21 H21A SING N N 49 
B04 C22 H22  SING N N 50 
B04 C23 H23  SING N N 51 
B04 C24 H24  SING N N 52 
B04 C25 H25  SING N N 53 
B04 C27 H27  SING N N 54 
B04 C27 H27A SING N N 55 
B04 C27 H27B SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
B04 SMILES           ACDLabs              12.01 "O=C(NCc1[n+](cccc1)C)C3N(C(=O)C(N)Cc2ccccc2)CCC3"                                                                                                                 
B04 InChI            InChI                1.03  "InChI=1S/C21H26N4O2/c1-24-12-6-5-10-17(24)15-23-20(26)19-11-7-13-25(19)21(27)18(22)14-16-8-3-2-4-9-16/h2-6,8-10,12,18-19H,7,11,13-15,22H2,1H3/p+1/t18-,19+/m1/s1" 
B04 InChIKey         InChI                1.03  GWFYERFSYVJQNW-MOPGFXCFSA-O                                                                                                                                        
B04 SMILES_CANONICAL CACTVS               3.370 "C[n+]1ccccc1CNC(=O)[C@@H]2CCCN2C(=O)[C@H](N)Cc3ccccc3"                                                                                                            
B04 SMILES           CACTVS               3.370 "C[n+]1ccccc1CNC(=O)[CH]2CCCN2C(=O)[CH](N)Cc3ccccc3"                                                                                                               
B04 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C[n+]1ccccc1CNC(=O)[C@@H]2CCCN2C(=O)[C@@H](Cc3ccccc3)N"                                                                                                           
B04 SMILES           "OpenEye OEToolkits" 1.7.2 "C[n+]1ccccc1CNC(=O)C2CCCN2C(=O)C(Cc3ccccc3)N"                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
B04 "SYSTEMATIC NAME" ACDLabs              12.01 "D-phenylalanyl-N-[(1-methylpyridinium-2-yl)methyl]-L-prolinamide"                                          
B04 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2S)-1-[(2R)-2-azanyl-3-phenyl-propanoyl]-N-[(1-methylpyridin-1-ium-2-yl)methyl]pyrrolidine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
B04 "Create component" 2011-06-22 PDBJ 
# 
