data_A1LU4
# 
_chem_comp.id                                    A1LU4 
_chem_comp.name                                  "2-[(2~{R},5~{R},8~{S},11~{S})-11-(3-carbamimidamidopropyl)-7-methyl-3,6,9,12,15-pentakis(oxidanylidene)-5-(phenylmethyl)-8-propan-2-yl-1,4,7,10,13-pentazacyclopentadec-2-yl]ethanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H40 N8 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-15 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        588.656 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1LU4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8XER 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1LU4 C10 C1  C 0 1 N N N N N N 181.896 184.083 219.887 5.028  -0.638 -0.495 C10 A1LU4 1  
A1LU4 N12 N1  N 0 1 N N N N N N 182.892 182.259 221.221 7.148  0.250  0.341  N12 A1LU4 2  
A1LU4 C13 C2  C 0 1 N N N N N N 183.168 181.036 221.430 8.093  0.564  1.288  C13 A1LU4 3  
A1LU4 C20 C3  C 0 1 N N N N N N 177.581 187.048 216.631 -0.865 -3.018 1.588  C20 A1LU4 4  
A1LU4 C24 C4  C 0 1 N N N N N N 176.932 190.025 214.376 -3.035 -2.691 -0.806 C24 A1LU4 5  
A1LU4 C28 C5  C 0 1 N N N N N N 177.769 190.220 216.699 -2.332 -0.698 0.504  C28 A1LU4 6  
A1LU4 C01 C6  C 0 1 N N N N N N 185.301 190.953 219.653 3.591  2.521  -1.541 C01 A1LU4 7  
A1LU4 C02 C7  C 0 1 N N N N N N 183.975 190.303 220.046 2.255  3.023  -0.990 C02 A1LU4 8  
A1LU4 C03 C8  C 0 1 N N N N N N 184.217 189.234 221.099 1.918  4.374  -1.623 C03 A1LU4 9  
A1LU4 C04 C9  C 0 1 N N S N N N 183.252 189.813 218.792 1.155  2.015  -1.323 C04 A1LU4 10 
A1LU4 C05 C10 C 0 1 N N N N N N 183.216 188.279 218.678 1.581  0.632  -0.888 C05 A1LU4 11 
A1LU4 O06 O1  O 0 1 N N N N N N 184.199 187.635 218.802 1.234  0.218  0.198  O06 A1LU4 12 
A1LU4 N07 N2  N 0 1 N N N N N N 181.931 187.629 218.385 2.339  -0.112 -1.737 N07 A1LU4 13 
A1LU4 C08 C11 C 0 1 N N S N N N 181.826 186.165 218.258 2.801  -1.438 -1.288 C08 A1LU4 14 
A1LU4 C09 C12 C 0 1 N N N N N N 182.612 185.347 219.335 3.722  -1.317 -0.077 C09 A1LU4 15 
A1LU4 C11 C13 C 0 1 N N N N N N 182.778 182.802 219.861 5.898  -0.400 0.741  C11 A1LU4 16 
A1LU4 N14 N3  N 0 1 N N N N N N 183.388 180.101 220.334 9.206  1.143  0.932  N14 A1LU4 17 
A1LU4 N15 N4  N 0 1 N N N N N N 183.267 180.556 222.800 7.865  0.269  2.612  N15 A1LU4 18 
A1LU4 C16 C14 C 0 1 N N N N N N 180.309 185.948 218.076 1.624  -2.322 -0.993 C16 A1LU4 19 
A1LU4 O17 O2  O 0 1 N N N N N N 179.605 185.828 219.019 1.170  -3.035 -1.873 O17 A1LU4 20 
A1LU4 N18 N5  N 0 1 N N N N N N 179.749 185.907 216.725 1.057  -2.342 0.253  N18 A1LU4 21 
A1LU4 C19 C15 C 0 1 N N N N N N 178.314 185.705 216.524 0.005  -3.383 0.413  C19 A1LU4 22 
A1LU4 O21 O3  O 0 1 N N N N N N 176.896 187.262 217.571 -0.321 -2.861 2.665  O21 A1LU4 23 
A1LU4 N22 N6  N 0 1 N N N N N N 177.715 188.057 215.591 -2.193 -2.927 1.494  N22 A1LU4 24 
A1LU4 C23 C16 C 0 1 N N R N N N 177.009 189.320 215.722 -2.940 -2.074 0.588  C23 A1LU4 25 
A1LU4 C25 C17 C 0 1 N N N N N N 175.504 190.107 213.849 -3.839 -3.964 -0.738 C25 A1LU4 26 
A1LU4 O26 O4  O 0 1 N N N N N N 174.559 190.403 214.623 -4.055 -4.682 -1.851 O26 A1LU4 27 
A1LU4 O27 O5  O 0 1 N N N N N N 175.278 189.886 212.631 -4.290 -4.339 0.319  O27 A1LU4 28 
A1LU4 O29 O6  O 0 1 N N N N N N 177.215 190.669 217.643 -1.233 -0.477 0.963  O29 A1LU4 29 
A1LU4 N30 N7  N 0 1 N N N N N N 179.177 190.525 216.464 -3.050 0.300  -0.086 N30 A1LU4 30 
A1LU4 C31 C18 C 0 1 N N R N N N 179.893 191.367 217.397 -2.425 1.645  -0.094 C31 A1LU4 31 
A1LU4 C32 C19 C 0 1 N N N N N N 179.959 192.808 216.914 -3.392 2.638  -0.744 C32 A1LU4 32 
A1LU4 C33 C20 C 0 1 Y N N N N N 180.797 193.638 217.911 -4.627 2.770  0.110  C33 A1LU4 33 
A1LU4 C34 C21 C 0 1 Y N N N N N 180.316 194.046 219.143 -4.679 3.727  1.106  C34 A1LU4 34 
A1LU4 C35 C22 C 0 1 Y N N N N N 180.907 194.777 220.159 -5.812 3.848  1.890  C35 A1LU4 35 
A1LU4 C36 C23 C 0 1 Y N N N N N 182.262 195.168 219.861 -6.892 3.012  1.676  C36 A1LU4 36 
A1LU4 C37 C24 C 0 1 Y N N N N N 182.916 194.821 218.623 -6.840 2.055  0.680  C37 A1LU4 37 
A1LU4 C38 C25 C 0 1 Y N N N N N 182.155 194.050 217.666 -5.709 1.938  -0.107 C38 A1LU4 38 
A1LU4 C39 C26 C 0 1 N N N N N N 181.339 190.862 217.517 -1.154 1.572  -0.893 C39 A1LU4 39 
A1LU4 O40 O7  O 0 1 N N N N N N 182.045 190.964 216.570 -1.077 0.808  -1.841 O40 A1LU4 40 
A1LU4 N41 N8  N 0 1 N N N N N N 181.866 190.276 218.764 -0.083 2.360  -0.572 N41 A1LU4 41 
A1LU4 C42 C27 C 0 1 N N N N N N 181.014 190.136 219.930 -0.120 3.451  0.404  C42 A1LU4 42 
A1LU4 H1  H1  H 0 1 N N N N N N 181.599 184.279 220.928 5.562  -1.279 -1.197 H1  A1LU4 43 
A1LU4 H2  H2  H 0 1 N N N N N N 180.998 183.899 219.278 4.805  0.316  -0.971 H2  A1LU4 44 
A1LU4 H3  H3  H 0 1 N N N N N N 182.749 182.867 222.002 7.309  0.458  -0.593 H3  A1LU4 45 
A1LU4 H4  H4  H 0 1 N N N N N N 177.546 189.471 213.651 -3.524 -1.989 -1.482 H4  A1LU4 46 
A1LU4 H5  H5  H 0 1 N N N N N N 177.327 191.045 214.488 -2.034 -2.913 -1.174 H5  A1LU4 47 
A1LU4 H6  H6  H 0 1 N N N N N N 185.820 191.305 220.557 4.391  3.186  -1.216 H6  A1LU4 48 
A1LU4 H7  H7  H 0 1 N N N N N N 185.930 190.216 219.133 3.782  1.514  -1.169 H7  A1LU4 49 
A1LU4 H8  H8  H 0 1 N N N N N N 185.108 191.806 218.986 3.552  2.505  -2.630 H8  A1LU4 50 
A1LU4 H9  H9  H 0 1 N N N N N N 183.349 191.083 220.504 2.328  3.137  0.092  H9  A1LU4 51 
A1LU4 H10 H10 H 0 1 N N N N N N 184.740 189.678 221.959 1.014  4.775  -1.163 H10 A1LU4 52 
A1LU4 H11 H11 H 0 1 N N N N N N 183.253 188.820 221.429 2.744  5.067  -1.464 H11 A1LU4 53 
A1LU4 H12 H12 H 0 1 N N N N N N 184.834 188.430 220.670 1.754  4.244  -2.693 H12 A1LU4 54 
A1LU4 H13 H13 H 0 1 N N N N N N 183.781 190.209 217.913 0.949  2.021  -2.391 H13 A1LU4 55 
A1LU4 H14 H14 H 0 1 N N N N N N 181.112 188.191 218.270 2.576  0.226  -2.625 H14 A1LU4 56 
A1LU4 H15 H15 H 0 1 N N N N N N 182.284 185.900 217.294 3.379  -1.896 -2.108 H15 A1LU4 57 
A1LU4 H16 H16 H 0 1 N N N N N N 183.563 185.026 218.886 3.939  -2.311 0.315  H16 A1LU4 58 
A1LU4 H17 H17 H 0 1 N N N N N N 182.815 186.016 220.184 3.233  -0.721 0.693  H17 A1LU4 59 
A1LU4 H18 H18 H 0 1 N N N N N N 182.315 182.051 219.204 5.364  0.240  1.443  H18 A1LU4 60 
A1LU4 H19 H19 H 0 1 N N N N N N 183.779 183.054 219.481 6.121  -1.355 1.218  H19 A1LU4 61 
A1LU4 H20 H20 H 0 1 N N N N N N 183.595 179.180 220.663 9.873  1.365  1.601  H20 A1LU4 62 
A1LU4 H22 H22 H 0 1 N N N N N N 183.119 181.186 223.562 7.037  -0.162 2.877  H22 A1LU4 63 
A1LU4 H23 H23 H 0 1 N N N N N N 183.483 179.596 222.979 8.532  0.491  3.280  H23 A1LU4 64 
A1LU4 H24 H24 H 0 1 N N N N N N 180.351 186.018 215.934 1.305  -1.752 0.979  H24 A1LU4 65 
A1LU4 H25 H25 H 0 1 N N N N N N 177.931 185.017 217.292 0.489  -4.345 0.614  H25 A1LU4 66 
A1LU4 H26 H26 H 0 1 N N N N N N 178.142 185.273 215.527 -0.577 -3.464 -0.496 H26 A1LU4 67 
A1LU4 H27 H27 H 0 1 N N N N N N 178.289 187.882 214.791 -2.719 -3.501 2.108  H27 A1LU4 68 
A1LU4 H28 H28 H 0 1 N N N N N N 175.991 189.150 216.103 -3.965 -1.963 0.979  H28 A1LU4 69 
A1LU4 H29 H29 H 0 1 N N N N N N 173.743 190.418 214.136 -4.576 -5.491 -1.758 H29 A1LU4 70 
A1LU4 H30 H30 H 0 1 N N N N N N 179.644 190.154 215.662 -3.923 0.142  -0.479 H30 A1LU4 71 
A1LU4 H31 H31 H 0 1 N N N N N N 179.416 191.335 218.387 -2.223 1.944  0.933  H31 A1LU4 72 
A1LU4 H32 H32 H 0 1 N N N N N N 180.429 192.842 215.920 -2.908 3.610  -0.835 H32 A1LU4 73 
A1LU4 H33 H33 H 0 1 N N N N N N 178.942 193.223 216.853 -3.672 2.278  -1.734 H33 A1LU4 74 
A1LU4 H34 H34 H 0 1 N N N N N N 179.301 193.740 219.348 -3.835 4.379  1.273  H34 A1LU4 75 
A1LU4 H35 H35 H 0 1 N N N N N N 180.404 195.029 221.081 -5.852 4.595  2.668  H35 A1LU4 76 
A1LU4 H36 H36 H 0 1 N N N N N N 182.809 195.743 220.593 -7.777 3.106  2.289  H36 A1LU4 77 
A1LU4 H37 H37 H 0 1 N N N N N N 183.932 195.125 218.420 -7.684 1.402  0.513  H37 A1LU4 78 
A1LU4 H38 H38 H 0 1 N N N N N N 182.622 193.773 216.733 -5.670 1.194  -0.889 H38 A1LU4 79 
A1LU4 H39 H39 H 0 1 N N N N N N 181.587 189.681 220.751 -1.090 3.462  0.901  H39 A1LU4 80 
A1LU4 H40 H40 H 0 1 N N N N N N 180.652 191.127 220.241 0.666  3.303  1.145  H40 A1LU4 81 
A1LU4 H41 H41 H 0 1 N N N N N N 180.156 189.493 219.682 0.037  4.401  -0.107 H41 A1LU4 82 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1LU4 O27 C25 DOUB N N 1  
A1LU4 C25 C24 SING N N 2  
A1LU4 C25 O26 SING N N 3  
A1LU4 C24 C23 SING N N 4  
A1LU4 N22 C23 SING N N 5  
A1LU4 N22 C20 SING N N 6  
A1LU4 C23 C28 SING N N 7  
A1LU4 N30 C28 SING N N 8  
A1LU4 N30 C31 SING N N 9  
A1LU4 C19 C20 SING N N 10 
A1LU4 C19 N18 SING N N 11 
A1LU4 O40 C39 DOUB N N 12 
A1LU4 C20 O21 DOUB N N 13 
A1LU4 C28 O29 DOUB N N 14 
A1LU4 N18 C16 SING N N 15 
A1LU4 C32 C31 SING N N 16 
A1LU4 C32 C33 SING N N 17 
A1LU4 C31 C39 SING N N 18 
A1LU4 C39 N41 SING N N 19 
A1LU4 C38 C33 DOUB Y N 20 
A1LU4 C38 C37 SING Y N 21 
A1LU4 C33 C34 SING Y N 22 
A1LU4 C16 C08 SING N N 23 
A1LU4 C16 O17 DOUB N N 24 
A1LU4 C08 N07 SING N N 25 
A1LU4 C08 C09 SING N N 26 
A1LU4 N07 C05 SING N N 27 
A1LU4 C37 C36 DOUB Y N 28 
A1LU4 C05 C04 SING N N 29 
A1LU4 C05 O06 DOUB N N 30 
A1LU4 N41 C04 SING N N 31 
A1LU4 N41 C42 SING N N 32 
A1LU4 C04 C02 SING N N 33 
A1LU4 C34 C35 DOUB Y N 34 
A1LU4 C09 C10 SING N N 35 
A1LU4 C01 C02 SING N N 36 
A1LU4 C36 C35 SING Y N 37 
A1LU4 C11 C10 SING N N 38 
A1LU4 C11 N12 SING N N 39 
A1LU4 C02 C03 SING N N 40 
A1LU4 N14 C13 DOUB N N 41 
A1LU4 N12 C13 SING N N 42 
A1LU4 C13 N15 SING N N 43 
A1LU4 C10 H1  SING N N 44 
A1LU4 C10 H2  SING N N 45 
A1LU4 N12 H3  SING N N 46 
A1LU4 C24 H4  SING N N 47 
A1LU4 C24 H5  SING N N 48 
A1LU4 C01 H6  SING N N 49 
A1LU4 C01 H7  SING N N 50 
A1LU4 C01 H8  SING N N 51 
A1LU4 C02 H9  SING N N 52 
A1LU4 C03 H10 SING N N 53 
A1LU4 C03 H11 SING N N 54 
A1LU4 C03 H12 SING N N 55 
A1LU4 C04 H13 SING N N 56 
A1LU4 N07 H14 SING N N 57 
A1LU4 C08 H15 SING N N 58 
A1LU4 C09 H16 SING N N 59 
A1LU4 C09 H17 SING N N 60 
A1LU4 C11 H18 SING N N 61 
A1LU4 C11 H19 SING N N 62 
A1LU4 N14 H20 SING N N 63 
A1LU4 N15 H22 SING N N 64 
A1LU4 N15 H23 SING N N 65 
A1LU4 N18 H24 SING N N 66 
A1LU4 C19 H25 SING N N 67 
A1LU4 C19 H26 SING N N 68 
A1LU4 N22 H27 SING N N 69 
A1LU4 C23 H28 SING N N 70 
A1LU4 O26 H29 SING N N 71 
A1LU4 N30 H30 SING N N 72 
A1LU4 C31 H31 SING N N 73 
A1LU4 C32 H32 SING N N 74 
A1LU4 C32 H33 SING N N 75 
A1LU4 C34 H34 SING N N 76 
A1LU4 C35 H35 SING N N 77 
A1LU4 C36 H36 SING N N 78 
A1LU4 C37 H37 SING N N 79 
A1LU4 C38 H38 SING N N 80 
A1LU4 C42 H39 SING N N 81 
A1LU4 C42 H40 SING N N 82 
A1LU4 C42 H41 SING N N 83 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1LU4 InChI            InChI                1.06  "InChI=1S/C27H40N8O7/c1-15(2)22-25(41)33-17(10-7-11-30-27(28)29)23(39)31-14-20(36)32-18(13-21(37)38)24(40)34-19(26(42)35(22)3)12-16-8-5-4-6-9-16/h4-6,8-9,15,17-19,22H,7,10-14H2,1-3H3,(H,31,39)(H,32,36)(H,33,41)(H,34,40)(H,37,38)(H4,28,29,30)/t17-,18+,19+,22-/m0/s1" 
A1LU4 InChIKey         InChI                1.06  AMLYAMJWYAIXIA-JYLXEMOASA-N                                                                                                                                                                                                                                               
A1LU4 SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@@H]1N(C)C(=O)[C@@H](Cc2ccccc2)NC(=O)[C@@H](CC(O)=O)NC(=O)CNC(=O)[C@H](CCCNC(N)=N)NC1=O"                                                                                                                                                                          
A1LU4 SMILES           CACTVS               3.385 "CC(C)[CH]1N(C)C(=O)[CH](Cc2ccccc2)NC(=O)[CH](CC(O)=O)NC(=O)CNC(=O)[CH](CCCNC(N)=N)NC1=O"                                                                                                                                                                                 
A1LU4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NCCC[C@H]1C(=O)NCC(=O)N[C@@H](C(=O)N[C@@H](C(=O)N([C@H](C(=O)N1)C(C)C)C)Cc2ccccc2)CC(=O)O"                                                                                                                                                                   
A1LU4 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)C1C(=O)NC(C(=O)NCC(=O)NC(C(=O)NC(C(=O)N1C)Cc2ccccc2)CC(=O)O)CCCNC(=N)N"                                                                                                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           A1LU4 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[(2~{R},5~{R},8~{S},11~{S})-11-(3-carbamimidamidopropyl)-7-methyl-3,6,9,12,15-pentakis(oxidanylidene)-5-(phenylmethyl)-8-propan-2-yl-1,4,7,10,13-pentazacyclopentadec-2-yl]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1LU4 "Create component" 2023-12-15 PDBJ 
A1LU4 "Initial release"  2024-12-18 RCSB 
# 
