data_6A4
# 
_chem_comp.id                                    6A4 
_chem_comp.name                                  "(4S)-2-sulfanylidene-4-[(tetradecanoyloxy)methyl]-1,3,2lambda~5~-dioxaphospholane-2-thiolate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H32 O4 P S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    -1 
_chem_comp.pdbx_initial_date                     2016-02-25 
_chem_comp.pdbx_modified_date                    2016-05-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        395.537 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6A4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5ID9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6A4 S4  S1  S 0  1 N N N 28.781 14.140 80.606 -8.068 -1.596 -1.656 S4  6A4 1  
6A4 P1  P1  P 0  1 N N N 29.346 12.932 82.045 -7.322 -0.537 -0.143 P1  6A4 2  
6A4 O1  O1  O 0  1 N N N 30.394 13.419 83.156 -5.696 -0.415 -0.263 O1  6A4 3  
6A4 S5  S2  S -1 1 N N N 30.113 11.283 81.352 -7.848 -1.335 1.605  S5  6A4 4  
6A4 O2  O2  O 0  1 N N N 28.095 12.660 83.019 -7.792 1.020  -0.236 O2  6A4 5  
6A4 C2  C1  C 0  1 N N N 28.480 12.825 84.382 -6.613 1.780  0.079  C2  6A4 6  
6A4 C1  C2  C 0  1 N N S 30.004 12.658 84.308 -5.458 0.834  0.432  C1  6A4 7  
6A4 C3  C3  C 0  1 N N N 30.665 12.975 85.625 -4.130 1.439  -0.028 C3  6A4 8  
6A4 O3  O3  O 0  1 N N N 30.303 11.908 86.516 -3.035 0.587  0.400  O3  6A4 9  
6A4 C4  C4  C 0  1 N N N 31.210 10.798 86.764 -1.794 0.979  0.074  C4  6A4 10 
6A4 O18 O4  O 0  1 N N N 31.793 10.282 85.825 -1.627 2.002  -0.548 O18 6A4 11 
6A4 C5  C5  C 0  1 N N N 31.430 10.305 88.168 -0.608 0.145  0.484  C5  6A4 12 
6A4 C6  C6  C 0  1 N N N 31.538 11.485 89.129 0.679  0.811  -0.008 C6  6A4 13 
6A4 C7  C7  C 0  1 N N N 32.984 11.894 89.414 1.883  -0.036 0.408  C7  6A4 14 
6A4 C8  C8  C 0  1 N N N 32.998 13.280 90.070 3.170  0.630  -0.084 C8  6A4 15 
6A4 C9  C9  C 0  1 N N N 34.396 13.874 90.181 4.374  -0.217 0.332  C9  6A4 16 
6A4 C10 C10 C 0  1 N N N 34.356 15.400 90.233 5.661  0.449  -0.160 C10 6A4 17 
6A4 C11 C11 C 0  1 N N N 35.760 15.972 90.443 6.865  -0.398 0.256  C11 6A4 18 
6A4 C12 C12 C 0  1 N N N 35.969 16.480 91.873 8.151  0.268  -0.236 C12 6A4 19 
6A4 C13 C13 C 0  1 N N N 37.444 16.492 92.308 9.356  -0.579 0.180  C13 6A4 20 
6A4 C14 C14 C 0  1 N N N 38.116 17.849 92.081 10.642 0.087  -0.312 C14 6A4 21 
6A4 C15 C15 C 0  1 N N N 37.655 18.920 93.083 11.846 -0.760 0.104  C15 6A4 22 
6A4 C16 C16 C 0  1 N N N 38.373 20.254 92.835 13.133 -0.094 -0.389 C16 6A4 23 
6A4 C17 C17 C 0  1 N N N 37.622 21.457 93.384 14.337 -0.941 0.028  C17 6A4 24 
6A4 H3  H3  H 0  1 N N N 28.205 13.822 84.757 -6.333 2.387  -0.783 H3  6A4 25 
6A4 H4  H4  H 0  1 N N N 28.024 12.055 85.022 -6.818 2.431  0.928  H4  6A4 26 
6A4 H5  H5  H 0  1 N N N 30.198 11.596 84.096 -5.436 0.661  1.508  H5  6A4 27 
6A4 H6  H6  H 0  1 N N N 31.757 13.018 85.504 -4.124 1.520  -1.115 H6  6A4 28 
6A4 H7  H7  H 0  1 N N N 30.301 13.938 86.014 -4.011 2.430  0.411  H7  6A4 29 
6A4 H8  H8  H 0  1 N N N 30.584 9.669  88.467 -0.581 0.061  1.570  H8  6A4 30 
6A4 H9  H9  H 0  1 N N N 32.360 9.719  88.206 -0.693 -0.849 0.045  H9  6A4 31 
6A4 H10 H10 H 0  1 N N N 31.011 12.345 88.689 0.652  0.895  -1.095 H10 6A4 32 
6A4 H11 H11 H 0  1 N N N 31.058 11.208 90.079 0.765  1.805  0.431  H11 6A4 33 
6A4 H12 H12 H 0  1 N N N 33.446 11.162 90.092 1.910  -0.120 1.494  H12 6A4 34 
6A4 H13 H13 H 0  1 N N N 33.549 11.928 88.471 1.798  -1.030 -0.031 H13 6A4 35 
6A4 H14 H14 H 0  1 N N N 32.376 13.959 89.468 3.143  0.714  -1.171 H14 6A4 36 
6A4 H15 H15 H 0  1 N N N 32.573 13.193 91.081 3.255  1.624  0.355  H15 6A4 37 
6A4 H16 H16 H 0  1 N N N 34.872 13.498 91.099 4.401  -0.301 1.418  H16 6A4 38 
6A4 H17 H17 H 0  1 N N N 34.987 13.562 89.307 4.288  -1.211 -0.107 H17 6A4 39 
6A4 H18 H18 H 0  1 N N N 33.948 15.783 89.286 5.633  0.533  -1.247 H18 6A4 40 
6A4 H19 H19 H 0  1 N N N 33.709 15.716 91.065 5.746  1.443  0.279  H19 6A4 41 
6A4 H20 H20 H 0  1 N N N 36.499 15.184 90.235 6.892  -0.482 1.342  H20 6A4 42 
6A4 H21 H21 H 0  1 N N N 35.910 16.808 89.744 6.779  -1.392 -0.184 H21 6A4 43 
6A4 H22 H22 H 0  1 N N N 35.578 17.506 91.939 8.124  0.352  -1.323 H22 6A4 44 
6A4 H23 H23 H 0  1 N N N 35.408 15.829 92.560 8.237  1.262  0.203  H23 6A4 45 
6A4 H24 H24 H 0  1 N N N 37.497 16.248 93.379 9.382  -0.663 1.266  H24 6A4 46 
6A4 H25 H25 H 0  1 N N N 37.987 15.729 91.731 9.270  -1.573 -0.259 H25 6A4 47 
6A4 H26 H26 H 0  1 N N N 39.204 17.722 92.179 10.615 0.171  -1.399 H26 6A4 48 
6A4 H27 H27 H 0  1 N N N 37.877 18.193 91.064 10.728 1.081  0.127  H27 6A4 49 
6A4 H28 H28 H 0  1 N N N 36.571 19.070 92.975 11.873 -0.844 1.190  H28 6A4 50 
6A4 H29 H29 H 0  1 N N N 37.878 18.576 94.104 11.761 -1.754 -0.336 H29 6A4 51 
6A4 H30 H30 H 0  1 N N N 39.362 20.212 93.315 13.106 -0.010 -1.475 H30 6A4 52 
6A4 H31 H31 H 0  1 N N N 38.497 20.386 91.750 13.218 0.900  0.051  H31 6A4 53 
6A4 H32 H32 H 0  1 N N N 38.192 22.374 93.171 14.364 -1.025 1.114  H32 6A4 54 
6A4 H33 H33 H 0  1 N N N 36.633 21.521 92.907 14.251 -1.935 -0.412 H33 6A4 55 
6A4 H34 H34 H 0  1 N N N 37.498 21.347 94.471 15.253 -0.466 -0.323 H34 6A4 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6A4 S4  P1  DOUB N N 1  
6A4 S5  P1  SING N N 2  
6A4 P1  O2  SING N N 3  
6A4 P1  O1  SING N N 4  
6A4 O2  C2  SING N N 5  
6A4 O1  C1  SING N N 6  
6A4 C1  C2  SING N N 7  
6A4 C1  C3  SING N N 8  
6A4 C3  O3  SING N N 9  
6A4 O18 C4  DOUB N N 10 
6A4 O3  C4  SING N N 11 
6A4 C4  C5  SING N N 12 
6A4 C5  C6  SING N N 13 
6A4 C6  C7  SING N N 14 
6A4 C7  C8  SING N N 15 
6A4 C8  C9  SING N N 16 
6A4 C9  C10 SING N N 17 
6A4 C10 C11 SING N N 18 
6A4 C11 C12 SING N N 19 
6A4 C12 C13 SING N N 20 
6A4 C14 C13 SING N N 21 
6A4 C14 C15 SING N N 22 
6A4 C16 C15 SING N N 23 
6A4 C16 C17 SING N N 24 
6A4 C2  H3  SING N N 25 
6A4 C2  H4  SING N N 26 
6A4 C1  H5  SING N N 27 
6A4 C3  H6  SING N N 28 
6A4 C3  H7  SING N N 29 
6A4 C5  H8  SING N N 30 
6A4 C5  H9  SING N N 31 
6A4 C6  H10 SING N N 32 
6A4 C6  H11 SING N N 33 
6A4 C7  H12 SING N N 34 
6A4 C7  H13 SING N N 35 
6A4 C8  H14 SING N N 36 
6A4 C8  H15 SING N N 37 
6A4 C9  H16 SING N N 38 
6A4 C9  H17 SING N N 39 
6A4 C10 H18 SING N N 40 
6A4 C10 H19 SING N N 41 
6A4 C11 H20 SING N N 42 
6A4 C11 H21 SING N N 43 
6A4 C12 H22 SING N N 44 
6A4 C12 H23 SING N N 45 
6A4 C13 H24 SING N N 46 
6A4 C13 H25 SING N N 47 
6A4 C14 H26 SING N N 48 
6A4 C14 H27 SING N N 49 
6A4 C15 H28 SING N N 50 
6A4 C15 H29 SING N N 51 
6A4 C16 H30 SING N N 52 
6A4 C16 H31 SING N N 53 
6A4 C17 H32 SING N N 54 
6A4 C17 H33 SING N N 55 
6A4 C17 H34 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6A4 SMILES           ACDLabs              12.01 "S=P1(OCC(O1)COC(CCCCCCCCCCCCC)=O)[S-]"                                                                                            
6A4 InChI            InChI                1.03  "InChI=1S/C17H33O4PS2/c1-2-3-4-5-6-7-8-9-10-11-12-13-17(18)19-14-16-15-20-22(23,24)21-16/h16H,2-15H2,1H3,(H,23,24)/p-1/t16-/m0/s1" 
6A4 InChIKey         InChI                1.03  PXJKEDDZAWQNJX-INIZCTEOSA-M                                                                                                        
6A4 SMILES_CANONICAL CACTVS               3.385 "CCCCCCCCCCCCCC(=O)OC[C@H]1CO[P]([S-])(=S)O1"                                                                                      
6A4 SMILES           CACTVS               3.385 "CCCCCCCCCCCCCC(=O)OC[CH]1CO[P]([S-])(=S)O1"                                                                                       
6A4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CCCCCCCCCCCCCC(=O)OC[C@H]1COP(=S)(O1)[S-]"                                                                                        
6A4 SMILES           "OpenEye OEToolkits" 2.0.4 "CCCCCCCCCCCCCC(=O)OCC1COP(=S)(O1)[S-]"                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6A4 "SYSTEMATIC NAME" ACDLabs              12.01 "(4S)-2-sulfanylidene-4-[(tetradecanoyloxy)methyl]-1,3,2lambda~5~-dioxaphospholane-2-thiolate" 
6A4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(4~{S})-2-sulfanidyl-2-sulfanylidene-1,3,2$l^{5}-dioxaphospholan-4-yl]methyl tetradecanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6A4 "Create component" 2016-02-25 EBI  
6A4 "Modify charge"    2016-03-08 EBI  
6A4 "Initial release"  2016-05-11 RCSB 
# 
