data_1X4
#

_chem_comp.id                                   1X4
_chem_comp.name                                 "2,3-dideoxy-5-O-phosphono-alpha-D-ribofuranose"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H11 O6 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;2,3-dideoxyribose-5-phosphate; 2,3-dideoxy-5-O-phosphono-alpha-D-ribose; 2,3-dideoxy-5-O-phosphono-D-ribose;
2,3-dideoxy-5-O-phosphono-ribose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2013-07-22
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       198.111
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    1X4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4LR9
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  1X4  "2,3-dideoxyribose-5-phosphate"             PDB  ?  
2  1X4  "2,3-dideoxy-5-O-phosphono-alpha-D-ribose"  PDB  ?  
3  1X4  "2,3-dideoxy-5-O-phosphono-D-ribose"        PDB  ?  
4  1X4  "2,3-dideoxy-5-O-phosphono-ribose"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1X4  O1P  O1P    O  0  1  N  N  N  20.252   6.836  8.475  -3.227  -1.309   0.766  O1P  1X4   1  
1X4  P    P      P  0  1  N  N  N  19.116   5.768  8.080  -2.476  -0.148  -0.058  P    1X4   2  
1X4  O2P  O2P    O  0  1  N  N  N  19.810   4.799  6.990  -2.508  -0.469  -1.503  O2P  1X4   3  
1X4  O3P  O3P    O  0  1  N  N  N  18.624   5.037  9.266  -3.218   1.257   0.197  O3P  1X4   4  
1X4  O5   "O5'"  O  0  1  N  N  N  17.947   6.559  7.302  -0.946  -0.045   0.435  O5   1X4   5  
1X4  C5   "C5'"  C  0  1  N  N  N  17.813   7.966  7.499   0.012   0.821  -0.177  C5   1X4   6  
1X4  C4   "C4'"  C  0  1  N  N  S  16.612   8.511  6.755   1.359   0.673   0.532  C4   1X4   7  
1X4  O4   "O1'"  O  0  1  N  N  N  16.498   9.912  7.059   1.886  -0.640   0.305  O4   1X4   8  
1X4  C3   "C3'"  C  0  1  N  N  N  16.931   8.475  5.265   2.369   1.687  -0.046  C3   1X4   9  
1X4  C2   "C2'"  C  0  1  N  N  N  16.387   9.811  4.751   3.683   0.859  -0.084  C2   1X4  10  
1X4  C1   "C1'"  C  0  1  N  N  S  15.722  10.417  5.980   3.131  -0.553  -0.406  C1   1X4  11  
1X4  O1   O1     O  0  1  N  Y  N  14.418   9.868  6.115   4.037  -1.557   0.055  O1   1X4  12  
1X4  H1A  H1     H  0  1  N  N  N  21.045   6.651  7.986  -4.155  -1.428   0.521  H1A  1X4  13  
1X4  H2A  H2     H  0  1  N  N  N  18.810   4.111  9.167  -3.234   1.531   1.124  H2A  1X4  14  
1X4  H51  H3     H  0  1  N  N  N  18.720   8.468  7.132   0.123   0.555  -1.228  H51  1X4  15  
1X4  H52  H4     H  0  1  N  N  N  17.691   8.168  8.573  -0.329   1.853  -0.097  H52  1X4  16  
1X4  H4   H5     H  0  1  N  N  N  15.697   7.946  6.987   1.235   0.841   1.602  H4   1X4  17  
1X4  H3   H6     H  0  1  N  N  N  16.425   7.630  4.775   2.077   1.997  -1.049  H3   1X4  18  
1X4  H7   H7     H  0  1  N  N  N  18.016   8.401  5.097   2.471   2.551   0.611  H7   1X4  19  
1X4  H2   H8     H  0  1  N  N  N  17.202  10.454  4.387   4.346   1.211  -0.874  H2   1X4  20  
1X4  H9   H9     H  0  1  N  N  N  15.655   9.654  3.945   4.185   0.873   0.883  H9   1X4  21  
1X4  H1   H10    H  0  1  N  N  N  15.721  11.516  5.932   2.964  -0.659  -1.478  H1   1X4  22  
1X4  HO1  H11    H  0  1  N  Y  N  13.995  10.240  6.880   3.744  -2.461  -0.119  HO1  1X4  23  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1X4  C2   C3   SING  N  N   1  
1X4  C2   C1   SING  N  N   2  
1X4  C3   C4   SING  N  N   3  
1X4  C1   O1   SING  N  N   4  
1X4  C1   O4   SING  N  N   5  
1X4  C4   O4   SING  N  N   6  
1X4  C4   C5   SING  N  N   7  
1X4  O2P  P    DOUB  N  N   8  
1X4  O5   C5   SING  N  N   9  
1X4  O5   P    SING  N  N  10  
1X4  P    O1P  SING  N  N  11  
1X4  P    O3P  SING  N  N  12  
1X4  O1P  H1A  SING  N  N  13  
1X4  O3P  H2A  SING  N  N  14  
1X4  C5   H51  SING  N  N  15  
1X4  C5   H52  SING  N  N  16  
1X4  C4   H4   SING  N  N  17  
1X4  C3   H3   SING  N  N  18  
1X4  C3   H7   SING  N  N  19  
1X4  C2   H2   SING  N  N  20  
1X4  C2   H9   SING  N  N  21  
1X4  C1   H1   SING  N  N  22  
1X4  O1   HO1  SING  N  N  23  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1X4  SMILES            ACDLabs               12.01  "O=P(OCC1OC(O)CC1)(O)O"  
1X4  InChI             InChI                 1.03   "InChI=1S/C5H11O6P/c6-5-2-1-4(11-5)3-10-12(7,8)9/h4-6H,1-3H2,(H2,7,8,9)/t4-,5-/m0/s1"  
1X4  InChIKey          InChI                 1.03   DOJAXCJBQVATEM-WHFBIAKZSA-N  
1X4  SMILES_CANONICAL  CACTVS                3.385  "O[C@@H]1CC[C@@H](CO[P](O)(O)=O)O1"  
1X4  SMILES            CACTVS                3.385  "O[CH]1CC[CH](CO[P](O)(O)=O)O1"  
1X4  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1C[C@H](O[C@@H]1COP(=O)(O)O)O"  
1X4  SMILES            "OpenEye OEToolkits"  1.7.6  "C1CC(OC1COP(=O)(O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1X4  "SYSTEMATIC NAME"            ACDLabs               12.01  "[(2S,5S)-5-hydroxytetrahydrofuran-2-yl]methyl dihydrogen phosphate"  
1X4  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.7.6  "[(2S,5S)-5-oxidanyloxolan-2-yl]methyl dihydrogen phosphate"  
1X4  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    "a-D-2,3-deoxy-Ribf5PO3"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
1X4  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
1X4  "CARBOHYDRATE RING"                    furanose  PDB  ?  
1X4  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
1X4  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1X4  "Create component"          2013-07-22  RCSB  
1X4  "Initial release"           2013-07-31  RCSB  
1X4  "Other modification"        2020-07-03  RCSB  
1X4  "Modify name"               2020-07-17  RCSB  
1X4  "Modify synonyms"           2020-07-17  RCSB  
1X4  "Modify internal type"      2020-07-17  RCSB  
1X4  "Modify linking type"       2020-07-17  RCSB  
1X4  "Modify atom id"            2020-07-17  RCSB  
1X4  "Modify component atom id"  2020-07-17  RCSB  
1X4  "Modify leaving atom flag"  2020-07-17  RCSB  
##
