data_1O4
#

_chem_comp.id                                   1O4
_chem_comp.name                                 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(8-azanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H30 N7 O13 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2021-06-23
_chem_comp.pdbx_modified_date                   2022-03-18
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       686.482
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    1O4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7NAI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1O4  C8    C1   C  0  1  N  N  R   8.726  28.720  -12.184  -6.911  -0.671   1.579  C8    1O4   1  
1O4  C5    C2   C  0  1  N  N  N  10.072  27.920   -9.253  -3.935  -2.546   1.176  C5    1O4   2  
1O4  C6    C3   C  0  1  N  N  R  10.466  28.566  -10.560  -4.584  -1.341   1.859  C6    1O4   3  
1O4  N6    N1   N  0  1  N  N  N  14.605  24.910  -10.377   8.223   4.315   1.654  N6    1O4   4  
1O4  N1    N2   N  0  1  Y  N  N   8.581  25.226  -14.749  -6.600   1.924  -1.961  N1    1O4   5  
1O4  C2    C4   C  0  1  N  N  S  12.799  25.356   -4.173   4.865   0.043  -3.132  C2    1O4   6  
1O4  N3    N3   N  0  1  Y  N  N  11.960  24.904  -16.241  -8.866   4.381  -0.438  N3    1O4   7  
1O4  C4    C5   C  0  1  N  N  N  10.528  26.273   -4.913   3.071  -1.482  -2.222  C4    1O4   8  
1O4  N     N4   N  0  1  Y  N  N   9.659  26.822  -13.584  -6.366   1.242   0.099  N     1O4   9  
1O4  C     C6   C  0  1  N  N  R  12.217  23.802   -5.957   5.409   1.024  -0.970  C     1O4  10  
1O4  O     O1   O  0  1  N  N  N   9.122  25.953   -4.927   1.969  -1.566  -1.317  O     1O4  11  
1O4  C1    C7   C  0  1  N  N  R  13.374  24.671   -5.428   5.981   0.810  -2.388  C1    1O4  12  
1O4  C10   C8   C  0  1  Y  N  N   8.486  26.155  -13.827  -6.003   1.052  -1.202  C10   1O4  13  
1O4  C11   C9   C  0  1  Y  N  N   9.914  25.280  -15.132  -7.382   2.726  -1.199  C11   1O4  14  
1O4  C12   C10  C  0  1  Y  N  N  10.587  26.256  -14.418  -7.241   2.298   0.132  C12   1O4  15  
1O4  C13   C11  C  0  1  Y  N  N  12.473  25.869  -15.477  -8.702   3.942   0.797  C13   1O4  16  
1O4  C14   C12  C  0  1  Y  N  N  10.659  24.571  -16.093  -8.235   3.812  -1.459  C14   1O4  17  
1O4  C15   C13  C  0  1  Y  N  N  12.704  24.354   -8.265   7.004   1.990   0.526  C15   1O4  18  
1O4  C16   C14  C  0  1  Y  N  N  12.382  24.314   -9.623   8.017   1.899   1.491  C16   1O4  19  
1O4  C17   C15  C  0  1  Y  N  N  13.355  24.432  -10.665   8.622   3.043   2.051  C17   1O4  20  
1O4  C18   C16  C  0  1  Y  N  N  12.987  24.172  -11.977   9.614   2.885   2.997  C18   1O4  21  
1O4  C19   C17  C  0  1  Y  N  N  11.676  23.861  -12.304  10.020   1.618   3.401  C19   1O4  22  
1O4  C20   C18  C  0  1  Y  N  N  10.704  23.832  -11.341   9.453   0.495   2.875  C20   1O4  23  
1O4  C21   C19  C  0  1  Y  N  N  11.028  24.052   -9.977   8.441   0.612   1.912  C21   1O4  24  
1O4  C22   C20  C  0  1  Y  N  N  10.071  23.942   -8.934   7.822  -0.514   1.337  C22   1O4  25  
1O4  C23   C21  C  0  1  Y  N  N  10.466  24.000   -7.640   6.847  -0.319   0.407  C23   1O4  26  
1O4  C3    C22  C  0  1  N  N  R  11.291  25.138   -4.283   3.749  -0.119  -2.076  C3    1O4  27  
1O4  C7    C23  C  0  1  N  N  S   9.445  29.563  -11.130  -6.014  -1.700   2.309  C7    1O4  28  
1O4  C9    C24  C  0  1  N  N  R   9.930  27.971  -12.729  -5.905   0.461   1.250  C9    1O4  29  
1O4  N2    N5   N  0  1  Y  N  N  11.871  26.598  -14.540  -7.913   2.930   1.089  N2    1O4  30  
1O4  N4    N6   N  0  1  N  N  N  10.159  23.607  -16.875  -8.414   4.277  -2.750  N4    1O4  31  
1O4  N5    N7   N  1  1  Y  N  N  11.770  24.144   -7.325   6.470   0.896   0.033  N5    1O4  32  
1O4  O1    O2   O  0  1  N  N  N   8.455  27.079   -6.939  -0.184  -2.562  -0.182  O1    1O4  33  
1O4  O10   O3   O  0  1  N  N  N  11.132  23.947   -5.080   4.428  -0.029  -0.805  O10   1O4  34  
1O4  O11   O4   O  0  1  N  N  N  13.281  24.805   -2.956   4.393   0.802  -4.247  O11   1O4  35  
1O4  O12   O5   O  0  1  N  N  N  14.490  23.831   -5.156   6.233   2.066  -3.022  O12   1O4  36  
1O4  O2    O6   O  0  1  N  N  N   6.585  26.552   -8.491  -2.202  -3.742  -1.134  O2    1O4  37  
1O4  O3    O7   O  0  1  N  N  N   8.740  27.379   -9.387  -2.576  -2.240   0.860  O3    1O4  38  
1O4  O4    O8   O  0  1  N  N  N  10.644  27.552  -11.582  -4.691  -0.251   0.928  O4    1O4  39  
1O4  O5    O9   O  0  1  N  N  N   8.088  29.497  -13.192  -7.949  -0.198   2.440  O5    1O4  40  
1O4  O6    O10  O  0  1  N  N  N  10.127  30.660  -11.730  -6.142  -1.561   3.725  O6    1O4  41  
1O4  O7    O11  O  0  1  N  N  N   7.291  28.976   -8.059  -1.338  -4.548   1.097  O7    1O4  42  
1O4  O8    O12  O  0  1  N  N  N   8.433  28.371   -4.780   1.890  -4.108  -0.651  O8    1O4  43  
1O4  O9    O13  O  0  1  N  N  N   6.702  26.554   -5.208   0.477  -3.198  -2.534  O9    1O4  44  
1O4  P     P1   P  0  1  N  N  N   8.077  27.068   -5.389   1.026  -2.866  -1.200  P     1O4  45  
1O4  P1    P2   P  0  1  N  N  N   7.646  27.550   -8.234  -1.588  -3.283   0.132  P1    1O4  46  
1O4  H6    H1   H  0  1  N  N  N   8.026  28.022  -11.701  -7.329  -1.097   0.667  H6    1O4  47  
1O4  H51   H2   H  0  1  N  N  N  10.778  27.111   -9.012  -3.968  -3.405   1.846  H51   1O4  48  
1O4  H52   H3   H  0  1  N  N  N  10.087  28.671   -8.449  -4.477  -2.780   0.259  H52   1O4  49  
1O4  H4    H4   H  0  1  N  N  N  11.417  29.099  -10.411  -3.989  -1.039   2.721  H4    1O4  50  
1O4  HN62  H5   H  0  0  N  N  N  14.694  25.038   -9.389   7.525   4.419   0.988  HN62  1O4  51  
1O4  HN61  H6   H  0  0  N  N  N  15.293  24.256  -10.691   8.643   5.098   2.043  HN61  1O4  52  
1O4  H2    H7   H  0  1  N  N  N  13.013  26.434   -4.223   5.225  -0.932  -3.460  H2    1O4  53  
1O4  H42   H8   H  0  1  N  N  N  10.880  26.425   -5.944   3.788  -2.271  -1.996  H42   1O4  54  
1O4  H41   H9   H  0  1  N  N  N  10.690  27.192   -4.331   2.711  -1.601  -3.244  H41   1O4  55  
1O4  H     H10  H  0  1  N  N  N  12.556  22.755   -5.953   4.932   2.002  -0.896  H     1O4  56  
1O4  H1    H11  H  0  1  N  N  N  13.628  25.436   -6.177   6.892   0.213  -2.347  H1    1O4  57  
1O4  H10   H12  H  0  1  N  N  N   7.566  26.375  -13.306  -5.321   0.290  -1.550  H10   1O4  58  
1O4  H13   H13  H  0  1  N  N  N  13.518  26.089  -15.640  -9.234   4.434   1.598  H13   1O4  59  
1O4  H15   H14  H  0  1  N  N  N  13.722  24.557   -7.966   6.660   2.958   0.193  H15   1O4  60  
1O4  H18   H15  H  0  1  N  N  N  13.734  24.212  -12.756  10.081   3.758   3.430  H18   1O4  61  
1O4  H19   H16  H  0  1  N  N  N  11.419  23.639  -13.329  10.799   1.521   4.143  H19   1O4  62  
1O4  H20   H17  H  0  1  N  N  N   9.679  23.640  -11.622   9.781  -0.481   3.200  H20   1O4  63  
1O4  H22   H18  H  0  1  N  N  N   9.026  23.812   -9.173   8.115  -1.512   1.627  H22   1O4  64  
1O4  H23   H19  H  0  1  N  N  N   9.730  23.930   -6.853   6.368  -1.178  -0.039  H23   1O4  65  
1O4  H3    H20  H  0  1  N  N  N  10.891  24.962   -3.274   3.015   0.682  -2.174  H3    1O4  66  
1O4  H5    H21  H  0  1  N  N  N   8.743  29.887  -10.347  -6.267  -2.714   2.000  H5    1O4  67  
1O4  H7    H22  H  0  1  N  N  N  10.544  28.689  -13.293  -5.757   1.107   2.115  H7    1O4  68  
1O4  HN41  H23  H  0  0  N  N  N  10.875  23.265  -17.483  -9.006   5.028  -2.918  HN41  1O4  69  
1O4  HN42  H24  H  0  0  N  N  N   9.820  22.858  -16.305  -7.948   3.853  -3.488  HN42  1O4  70  
1O4  HO11  H25  H  0  0  N  N  N  12.892  25.267   -2.223   5.062   0.959  -4.927  HO11  1O4  71  
1O4  HO12  H26  H  0  0  N  N  N  15.210  24.357   -4.829   6.594   1.991  -3.916  HO12  1O4  72  
1O4  HO5   H27  H  0  1  N  N  N   7.342  29.951  -12.818  -8.552  -0.889   2.746  HO5   1O4  73  
1O4  HO6   H28  H  0  1  N  N  N  10.565  31.168  -11.057  -7.037  -1.718   4.056  HO6   1O4  74  
1O4  H8    H29  H  0  1  N  N  N   6.350  29.081   -8.140  -0.937  -4.321   1.947  H8    1O4  75  
1O4  H9    H30  H  0  1  N  N  N   7.678  28.725   -4.324   2.282  -3.961   0.221  H9    1O4  76  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1O4  N4   C14   SING  N  N   1  
1O4  N3   C14   DOUB  Y  N   2  
1O4  N3   C13   SING  Y  N   3  
1O4  C14  C11   SING  Y  N   4  
1O4  C13  N2    DOUB  Y  N   5  
1O4  C11  N1    SING  Y  N   6  
1O4  C11  C12   DOUB  Y  N   7  
1O4  N1   C10   DOUB  Y  N   8  
1O4  N2   C12   SING  Y  N   9  
1O4  C12  N     SING  Y  N  10  
1O4  C10  N     SING  Y  N  11  
1O4  N    C9    SING  N  N  12  
1O4  O5   C8    SING  N  N  13  
1O4  C9   C8    SING  N  N  14  
1O4  C9   O4    SING  N  N  15  
1O4  C19  C18   DOUB  Y  N  16  
1O4  C19  C20   SING  Y  N  17  
1O4  C8   C7    SING  N  N  18  
1O4  C18  C17   SING  Y  N  19  
1O4  O6   C7    SING  N  N  20  
1O4  O4   C6    SING  N  N  21  
1O4  C20  C21   DOUB  Y  N  22  
1O4  C7   C6    SING  N  N  23  
1O4  C17  N6    SING  N  N  24  
1O4  C17  C16   DOUB  Y  N  25  
1O4  C6   C5    SING  N  N  26  
1O4  C21  C16   SING  Y  N  27  
1O4  C21  C22   SING  Y  N  28  
1O4  C16  C15   SING  Y  N  29  
1O4  O3   C5    SING  N  N  30  
1O4  O3   P1    SING  N  N  31  
1O4  C22  C23   DOUB  Y  N  32  
1O4  O2   P1    DOUB  N  N  33  
1O4  C15  N5    DOUB  Y  N  34  
1O4  P1   O7    SING  N  N  35  
1O4  P1   O1    SING  N  N  36  
1O4  C23  N5    SING  Y  N  37  
1O4  N5   C     SING  N  N  38  
1O4  O1   P     SING  N  N  39  
1O4  C    C1    SING  N  N  40  
1O4  C    O10   SING  N  N  41  
1O4  C1   O12   SING  N  N  42  
1O4  C1   C2    SING  N  N  43  
1O4  P    O9    DOUB  N  N  44  
1O4  P    O     SING  N  N  45  
1O4  P    O8    SING  N  N  46  
1O4  O10  C3    SING  N  N  47  
1O4  O    C4    SING  N  N  48  
1O4  C4   C3    SING  N  N  49  
1O4  C3   C2    SING  N  N  50  
1O4  C2   O11   SING  N  N  51  
1O4  C8   H6    SING  N  N  52  
1O4  C5   H51   SING  N  N  53  
1O4  C5   H52   SING  N  N  54  
1O4  C6   H4    SING  N  N  55  
1O4  N6   HN62  SING  N  N  56  
1O4  N6   HN61  SING  N  N  57  
1O4  C2   H2    SING  N  N  58  
1O4  C4   H42   SING  N  N  59  
1O4  C4   H41   SING  N  N  60  
1O4  C    H     SING  N  N  61  
1O4  C1   H1    SING  N  N  62  
1O4  C10  H10   SING  N  N  63  
1O4  C13  H13   SING  N  N  64  
1O4  C15  H15   SING  N  N  65  
1O4  C18  H18   SING  N  N  66  
1O4  C19  H19   SING  N  N  67  
1O4  C20  H20   SING  N  N  68  
1O4  C22  H22   SING  N  N  69  
1O4  C23  H23   SING  N  N  70  
1O4  C3   H3    SING  N  N  71  
1O4  C7   H5    SING  N  N  72  
1O4  C9   H7    SING  N  N  73  
1O4  N4   HN41  SING  N  N  74  
1O4  N4   HN42  SING  N  N  75  
1O4  O11  HO11  SING  N  N  76  
1O4  O12  HO12  SING  N  N  77  
1O4  O5   HO5   SING  N  N  78  
1O4  O6   HO6   SING  N  N  79  
1O4  O7   H8    SING  N  N  80  
1O4  O8   H9    SING  N  N  81  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1O4  SMILES            ACDLabs               12.01  "Nc1cccc2cc[n+](cc12)C1OC(COP(=O)(O)OP(=O)(O)OCC2OC(n3cnc4c(N)ncnc43)C(O)C2O)C(O)C1O"  
1O4  InChI             InChI                 1.03   "InChI=1S/C24H29N7O13P2/c25-13-3-1-2-11-4-5-30(6-12(11)13)23-19(34)17(32)14(42-23)7-40-45(36,37)44-46(38,39)41-8-15-18(33)20(35)24(43-15)31-10-29-16-21(26)27-9-28-22(16)31/h1-6,9-10,14-15,17-20,23-25,32-35H,7-8H2,(H4,26,27,28,36,37,38,39)/p+1/t14-,15-,17-,18-,19-,20-,23-,24-/m1/s1"  
1O4  InChIKey          InChI                 1.03   ZWKGBLKVIKZVCF-PAXFUWABSA-O  
1O4  SMILES_CANONICAL  CACTVS                3.385  "Nc1cccc2cc[n+](cc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)[C@@H](O)[C@H]3O"  
1O4  SMILES            CACTVS                3.385  "Nc1cccc2cc[n+](cc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)[CH](O)[CH]3O"  
1O4  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc2cc[n+](cc2c(c1)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O"  
1O4  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc2cc[n+](cc2c(c1)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1O4  "SYSTEMATIC NAME"  ACDLabs               12.01  "8-amino-2-[(2R,3R,4S,5R)-5-({[(R)-{[(S)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]isoquinolin-2-ium (non-preferred name)"  
1O4  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(8-azanylisoquinolin-2-ium-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate"  
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loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1O4  "Create component"      2021-06-23  RCSB  
1O4  "Modify aromatic_flag"  2022-03-03  RCSB  
1O4  "Initial release"       2022-03-23  RCSB  
##
