data_1J4
# 
_chem_comp.id                                    1J4 
_chem_comp.name                                  "4-[(9-cyclopentyl-7,7-difluoro-5-methyl-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]-2-fluoro-5-methoxy-N-(1-methylpiperidin-4-yl)benzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H34 F3 N7 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-02-12 
_chem_comp.pdbx_modified_date                    2013-05-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        561.599 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     1J4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4J53 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1J4 O7  O7  O 0 1 N N N 51.058 11.352 31.074 -4.946  -1.720 -0.636 O7  1J4 1  
1J4 C6  C6  C 0 1 N N N 50.581 11.208 32.179 -4.774  -0.570 -0.281 C6  1J4 2  
1J4 N8  N8  N 0 1 N N N 51.345 10.945 33.246 -5.823  0.271  -0.188 N8  1J4 3  
1J4 C9  C9  C 0 1 N N N 52.808 10.834 33.234 -7.171  -0.201 -0.516 C9  1J4 4  
1J4 C10 C10 C 0 1 N N N 53.357 12.010 34.040 -7.793  -0.867 0.715  C10 1J4 5  
1J4 C11 C11 C 0 1 N N N 54.858 11.887 34.281 -9.223  -1.303 0.385  C11 1J4 6  
1J4 N12 N12 N 0 1 N N N 55.196 10.610 34.933 -10.014 -0.131 -0.013 N12 1J4 7  
1J4 C13 C13 C 0 1 N N N 56.662 10.509 35.101 -11.426 -0.489 -0.204 C13 1J4 8  
1J4 C14 C14 C 0 1 N N N 54.701 9.471  34.133 -9.462  0.496  -1.221 C14 1J4 9  
1J4 C15 C15 C 0 1 N N N 53.186 9.545  33.956 -8.040  0.986  -0.939 C15 1J4 10 
1J4 C5  C5  C 0 1 Y N N 49.081 11.298 32.336 -3.419  -0.097 0.054  C5  1J4 11 
1J4 C4  C4  C 0 1 Y N N 48.271 10.516 31.507 -3.220  1.224  0.469  C4  1J4 12 
1J4 C3  C3  C 0 1 Y N N 46.874 10.557 31.628 -1.950  1.663  0.782  C3  1J4 13 
1J4 O2  O2  O 0 1 N N N 46.067 9.788  30.816 -1.755  2.947  1.185  O2  1J4 14 
1J4 C1  C1  C 0 1 N N N 46.323 8.408  30.541 -2.910  3.786  1.262  C1  1J4 15 
1J4 C16 C16 C 0 1 Y N N 48.470 12.133 33.281 -2.329  -0.971 -0.036 C16 1J4 16 
1J4 F17 F17 F 0 1 N N N 49.181 12.922 34.112 -2.518  -2.249 -0.431 F17 1J4 17 
1J4 C18 C18 C 0 1 Y N N 47.083 12.171 33.391 -1.061  -0.525 0.279  C18 1J4 18 
1J4 C19 C19 C 0 1 Y N N 46.270 11.388 32.568 -0.865  0.789  0.686  C19 1J4 19 
1J4 N20 N20 N 0 1 N N N 44.910 11.333 32.653 0.417   1.235  1.003  N20 1J4 20 
1J4 C21 C21 C 0 1 Y N N 44.114 11.897 33.606 1.526   0.609  0.452  C21 1J4 21 
1J4 N22 N22 N 0 1 Y N N 42.782 11.728 33.467 1.343   -0.326 -0.467 N22 1J4 22 
1J4 C23 C23 C 0 1 Y N N 41.917 12.254 34.324 2.375   -0.956 -1.016 C23 1J4 23 
1J4 C24 C24 C 0 1 Y N N 42.369 12.984 35.418 3.652   -0.618 -0.612 C24 1J4 24 
1J4 N25 N25 N 0 1 N N N 41.405 13.586 36.265 4.780   -1.269 -1.133 N25 1J4 25 
1J4 C26 C26 C 0 1 N N N 40.236 14.119 35.547 4.951   -1.438 -2.579 C26 1J4 26 
1J4 C27 C27 C 0 1 N N N 41.498 13.786 37.592 5.706   -1.736 -0.266 C27 1J4 27 
1J4 O28 O28 O 0 1 N N N 40.576 14.363 38.164 6.725   -2.249 -0.677 O28 1J4 28 
1J4 N40 N40 N 0 1 Y N N 44.583 12.608 34.652 2.735   0.969  0.858  N40 1J4 29 
1J4 C39 C39 C 0 1 Y N N 43.749 13.180 35.553 3.814   0.385  0.353  C39 1J4 30 
1J4 N33 N33 N 0 1 N N N 44.267 13.924 36.649 5.084   0.769  0.742  N33 1J4 31 
1J4 C32 C32 C 0 1 N N N 44.021 13.151 37.875 5.692   -0.180 1.679  C32 1J4 32 
1J4 C29 C29 C 0 1 N N N 42.629 13.316 38.484 5.459   -1.615 1.214  C29 1J4 33 
1J4 F30 F30 F 0 1 N N N 42.716 14.189 39.474 4.138   -1.982 1.493  F30 1J4 34 
1J4 F31 F31 F 0 1 N N N 42.306 12.135 38.979 6.330   -2.469 1.898  F31 1J4 35 
1J4 C34 C34 C 0 1 N N N 45.707 14.313 36.521 5.950   0.984  -0.425 C34 1J4 36 
1J4 C35 C35 C 0 1 N N N 46.010 15.546 37.376 5.366   2.092  -1.337 C35 1J4 37 
1J4 C36 C36 C 0 1 N N N 47.304 15.308 38.136 6.613   2.596  -2.104 C36 1J4 38 
1J4 C37 C37 C 0 1 N N N 47.623 13.828 38.024 7.742   2.565  -1.053 C37 1J4 39 
1J4 C38 C38 C 0 1 N N N 46.738 13.249 36.928 7.320   1.540  0.014  C38 1J4 40 
1J4 H1  H1  H 0 1 N N N 50.881 10.814 34.122 -5.686  1.188  0.095  H1  1J4 41 
1J4 H2  H2  H 0 1 N N N 53.209 10.841 32.210 -7.116  -0.922 -1.332 H2  1J4 42 
1J4 H3  H3  H 0 1 N N N 53.161 12.941 33.488 -7.202  -1.739 0.995  H3  1J4 43 
1J4 H4  H4  H 0 1 N N N 52.843 12.045 35.012 -7.811  -0.157 1.542  H4  1J4 44 
1J4 H5  H5  H 0 1 N N N 55.381 11.945 33.315 -9.203  -2.023 -0.434 H5  1J4 45 
1J4 H6  H6  H 0 1 N N N 55.186 12.716 34.926 -9.674  -1.764 1.263  H6  1J4 46 
1J4 H8  H8  H 0 1 N N N 57.023 11.360 35.697 -11.830 -0.884 0.729  H8  1J4 47 
1J4 H9  H9  H 0 1 N N N 56.908 9.569  35.617 -11.989 0.396  -0.498 H9  1J4 48 
1J4 H10 H10 H 0 1 N N N 57.146 10.522 34.113 -11.506 -1.247 -0.984 H10 1J4 49 
1J4 H11 H11 H 0 1 N N N 54.958 8.532  34.646 -9.442  -0.232 -2.032 H11 1J4 50 
1J4 H12 H12 H 0 1 N N N 55.180 9.491  33.143 -10.087 1.342  -1.508 H12 1J4 51 
1J4 H13 H13 H 0 1 N N N 52.702 9.525  34.944 -8.062  1.725  -0.137 H13 1J4 52 
1J4 H14 H14 H 0 1 N N N 52.846 8.683  33.364 -7.626  1.438  -1.840 H14 1J4 53 
1J4 H15 H15 H 0 1 N N N 48.725 9.874  30.766 -4.059  1.900  0.544  H15 1J4 54 
1J4 H16 H16 H 0 1 N N N 45.543 8.016  29.871 -2.615  4.781  1.595  H16 1J4 55 
1J4 H17 H17 H 0 1 N N N 47.306 8.307  30.058 -3.374  3.855  0.278  H17 1J4 56 
1J4 H18 H18 H 0 1 N N N 46.317 7.839  31.483 -3.621  3.361  1.970  H18 1J4 57 
1J4 H19 H19 H 0 1 N N N 46.627 12.818 34.126 -0.220  -1.199 0.210  H19 1J4 58 
1J4 H20 H20 H 0 1 N N N 44.442 10.820 31.933 0.534   1.983  1.609  H20 1J4 59 
1J4 H21 H21 H 0 1 N N N 40.857 12.115 34.172 2.220   -1.719 -1.765 H21 1J4 60 
1J4 H22 H22 H 0 1 N N N 39.536 14.568 36.267 5.567   -0.627 -2.969 H22 1J4 61 
1J4 H23 H23 H 0 1 N N N 40.565 14.885 34.829 5.438   -2.392 -2.778 H23 1J4 62 
1J4 H24 H24 H 0 1 N N N 39.733 13.303 35.008 3.975   -1.419 -3.064 H24 1J4 63 
1J4 H25 H25 H 0 1 N N N 44.165 12.086 37.640 6.763   0.009  1.739  H25 1J4 64 
1J4 H26 H26 H 0 1 N N N 44.760 13.463 38.627 5.248   -0.046 2.666  H26 1J4 65 
1J4 H27 H27 H 0 1 N N N 45.898 14.578 35.471 6.076   0.056  -0.982 H27 1J4 66 
1J4 H28 H28 H 0 1 N N N 46.119 16.428 36.728 4.630   1.676  -2.026 H28 1J4 67 
1J4 H29 H29 H 0 1 N N N 45.188 15.713 38.088 4.929   2.893  -0.741 H29 1J4 68 
1J4 H30 H30 H 0 1 N N N 48.116 15.903 37.694 6.846   1.929  -2.934 H30 1J4 69 
1J4 H31 H31 H 0 1 N N N 47.178 15.588 39.192 6.454   3.612  -2.466 H31 1J4 70 
1J4 H32 H32 H 0 1 N N N 47.414 13.326 38.980 8.677   2.255  -1.519 H32 1J4 71 
1J4 H33 H33 H 0 1 N N N 48.683 13.691 37.762 7.858   3.550  -0.601 H33 1J4 72 
1J4 H34 H34 H 0 1 N N N 46.220 12.354 37.304 7.231   2.027  0.985  H34 1J4 73 
1J4 H35 H35 H 0 1 N N N 47.354 12.978 36.058 8.051   0.733  0.067  H35 1J4 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1J4 C1  O2  SING N N 1  
1J4 O2  C3  SING N N 2  
1J4 O7  C6  DOUB N N 3  
1J4 C4  C3  DOUB Y N 4  
1J4 C4  C5  SING Y N 5  
1J4 C3  C19 SING Y N 6  
1J4 C6  C5  SING N N 7  
1J4 C6  N8  SING N N 8  
1J4 C5  C16 DOUB Y N 9  
1J4 C19 N20 SING N N 10 
1J4 C19 C18 DOUB Y N 11 
1J4 N20 C21 SING N N 12 
1J4 C9  N8  SING N N 13 
1J4 C9  C15 SING N N 14 
1J4 C9  C10 SING N N 15 
1J4 C16 C18 SING Y N 16 
1J4 C16 F17 SING N N 17 
1J4 N22 C21 DOUB Y N 18 
1J4 N22 C23 SING Y N 19 
1J4 C21 N40 SING Y N 20 
1J4 C15 C14 SING N N 21 
1J4 C10 C11 SING N N 22 
1J4 C14 N12 SING N N 23 
1J4 C11 N12 SING N N 24 
1J4 C23 C24 DOUB Y N 25 
1J4 N40 C39 DOUB Y N 26 
1J4 N12 C13 SING N N 27 
1J4 C24 C39 SING Y N 28 
1J4 C24 N25 SING N N 29 
1J4 C26 N25 SING N N 30 
1J4 C39 N33 SING N N 31 
1J4 N25 C27 SING N N 32 
1J4 C34 N33 SING N N 33 
1J4 C34 C38 SING N N 34 
1J4 C34 C35 SING N N 35 
1J4 N33 C32 SING N N 36 
1J4 C38 C37 SING N N 37 
1J4 C35 C36 SING N N 38 
1J4 C27 O28 DOUB N N 39 
1J4 C27 C29 SING N N 40 
1J4 C32 C29 SING N N 41 
1J4 C37 C36 SING N N 42 
1J4 C29 F31 SING N N 43 
1J4 C29 F30 SING N N 44 
1J4 N8  H1  SING N N 45 
1J4 C9  H2  SING N N 46 
1J4 C10 H3  SING N N 47 
1J4 C10 H4  SING N N 48 
1J4 C11 H5  SING N N 49 
1J4 C11 H6  SING N N 50 
1J4 C13 H8  SING N N 51 
1J4 C13 H9  SING N N 52 
1J4 C13 H10 SING N N 53 
1J4 C14 H11 SING N N 54 
1J4 C14 H12 SING N N 55 
1J4 C15 H13 SING N N 56 
1J4 C15 H14 SING N N 57 
1J4 C4  H15 SING N N 58 
1J4 C1  H16 SING N N 59 
1J4 C1  H17 SING N N 60 
1J4 C1  H18 SING N N 61 
1J4 C18 H19 SING N N 62 
1J4 N20 H20 SING N N 63 
1J4 C23 H21 SING N N 64 
1J4 C26 H22 SING N N 65 
1J4 C26 H23 SING N N 66 
1J4 C26 H24 SING N N 67 
1J4 C32 H25 SING N N 68 
1J4 C32 H26 SING N N 69 
1J4 C34 H27 SING N N 70 
1J4 C35 H28 SING N N 71 
1J4 C35 H29 SING N N 72 
1J4 C36 H30 SING N N 73 
1J4 C36 H31 SING N N 74 
1J4 C37 H32 SING N N 75 
1J4 C37 H33 SING N N 76 
1J4 C38 H34 SING N N 77 
1J4 C38 H35 SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1J4 SMILES           ACDLabs              12.01 "FC5(F)C(=O)N(c1c(nc(nc1)Nc3c(OC)cc(C(=O)NC2CCN(C)CC2)c(F)c3)N(C4CCCC4)C5)C"                                                                                                                               
1J4 InChI            InChI                1.03  "InChI=1S/C27H34F3N7O3/c1-35-10-8-16(9-11-35)32-24(38)18-12-22(40-3)20(13-19(18)28)33-26-31-14-21-23(34-26)37(17-6-4-5-7-17)15-27(29,30)25(39)36(21)2/h12-14,16-17H,4-11,15H2,1-3H3,(H,32,38)(H,31,33,34)" 
1J4 InChIKey         InChI                1.03  GWRSATNRNFYMDI-UHFFFAOYSA-N                                                                                                                                                                                
1J4 SMILES_CANONICAL CACTVS               3.370 "COc1cc(c(F)cc1Nc2ncc3N(C)C(=O)C(F)(F)CN(C4CCCC4)c3n2)C(=O)NC5CCN(C)CC5"                                                                                                                                   
1J4 SMILES           CACTVS               3.370 "COc1cc(c(F)cc1Nc2ncc3N(C)C(=O)C(F)(F)CN(C4CCCC4)c3n2)C(=O)NC5CCN(C)CC5"                                                                                                                                   
1J4 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CN1CCC(CC1)NC(=O)c2cc(c(cc2F)Nc3ncc4c(n3)N(CC(C(=O)N4C)(F)F)C5CCCC5)OC"                                                                                                                                   
1J4 SMILES           "OpenEye OEToolkits" 1.7.6 "CN1CCC(CC1)NC(=O)c2cc(c(cc2F)Nc3ncc4c(n3)N(CC(C(=O)N4C)(F)F)C5CCCC5)OC"                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
1J4 "SYSTEMATIC NAME" ACDLabs              12.01 "4-[(9-cyclopentyl-7,7-difluoro-5-methyl-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]-2-fluoro-5-methoxy-N-(1-methylpiperidin-4-yl)benzamide" 
1J4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "4-[[9-cyclopentyl-7,7-bis(fluoranyl)-5-methyl-6-oxidanylidene-8H-pyrimido[4,5-b][1,4]diazepin-2-yl]amino]-2-fluoranyl-5-methoxy-N-(1-methylpiperidin-4-yl)benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1J4 "Create component" 2013-02-12 RCSB 
1J4 "Initial release"  2013-05-29 RCSB 
# 
