data_0G4
#

_chem_comp.id                                   0G4
_chem_comp.name                                 
;[[[[(2R,5S)-5-(4-azanyl-5-fluoranyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy
-oxidanyl-phosphoryl]amino]phosphonic acid
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C8 H14 F N4 O11 P3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "dCTP analog"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-01-06
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       486.202
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    0G4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3VCS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0G4  F5     F5     F  0  1  N  N  N  28.890  -15.124  -17.052  -3.722   2.866  -2.137  F5     0G4   1  
0G4  C5     C5     C  0  1  N  N  N  29.527  -14.131  -16.438  -4.273   2.163  -1.123  C5     0G4   2  
0G4  C4     C4     C  0  1  N  N  N  30.978  -14.229  -16.212  -5.285   2.734  -0.322  C4     0G4   3  
0G4  N4     N4     N  0  1  N  N  N  31.683  -15.317  -16.629  -5.721   4.016  -0.568  N4     0G4   4  
0G4  N3     N3     N  0  1  N  N  N  31.555  -13.200  -15.607  -5.813   2.029   0.669  N3     0G4   5  
0G4  C2     C2     C  0  1  N  N  N  30.848  -12.140  -15.216  -5.400   0.787   0.916  C2     0G4   6  
0G4  O2     O2     O  0  1  N  N  N  31.427  -11.202  -14.649  -5.903   0.159   1.834  O2     0G4   7  
0G4  C6     C6     C  0  1  N  N  N  28.850  -12.993  -16.015  -3.866   0.897  -0.862  C6     0G4   8  
0G4  N1     N1     N  0  1  N  N  N  29.544  -12.039  -15.417  -4.438   0.213   0.171  N1     0G4   9  
0G4  "C1'"  "C1'"  C  0  1  N  N  S  28.849  -10.855  -14.940  -4.008  -1.156   0.465  "C1'"  0G4  10  
0G4  "O4'"  "O4'"  O  0  1  N  N  N  27.884  -10.502  -15.924  -2.987  -1.547  -0.464  "O4'"  0G4  11  
0G4  "C2'"  "C2'"  C  0  1  N  N  N  28.199  -11.195  -13.597  -3.446  -1.223   1.907  "C2'"  0G4  12  
0G4  "S3'"  "S3'"  S  0  1  N  N  N  26.567  -10.611  -13.820  -2.155  -2.521   1.760  "S3'"  0G4  13  
0G4  "C4'"  "C4'"  C  0  1  N  N  R  26.689   -9.938  -15.414  -2.384  -2.796  -0.043  "C4'"  0G4  14  
0G4  "C5'"  "C5'"  C  0  1  N  N  N  25.626  -10.579  -16.293  -1.039  -3.015  -0.737  "C5'"  0G4  15  
0G4  "O5'"  "O5'"  O  0  1  N  N  N  25.966  -11.960  -16.450  -0.153  -1.943  -0.408  "O5'"  0G4  16  
0G4  PA     PA     P  0  1  N  N  N  25.047  -12.929  -17.346   1.355  -1.849  -0.966  PA     0G4  17  
0G4  O1A    O1A    O  0  1  N  N  N  25.740  -14.287  -17.343   2.084  -3.092  -0.630  O1A    0G4  18  
0G4  O2A    O2A    O  0  1  N  N  N  23.611  -12.787  -16.892   1.324  -1.660  -2.565  O2A    0G4  19  
0G4  O3A    O3A    O  0  1  N  N  N  25.154  -12.381  -18.870   2.099  -0.591  -0.291  O3A    0G4  20  
0G4  PB     PB     P  0  1  N  N  N  23.866  -11.869  -19.727   3.638  -0.132  -0.175  PB     0G4  21  
0G4  O2B    O2B    O  0  1  N  N  N  22.540  -12.280  -18.893   4.248   0.077  -1.651  O2B    0G4  22  
0G4  O1B    O1B    O  0  1  N  N  N  24.065  -12.403  -21.188   4.411  -1.175   0.535  O1B    0G4  23  
0G4  N3B    N3B    N  0  1  N  N  N  24.026  -10.346  -19.919   3.729   1.315   0.680  N3B    0G4  24  
0G4  PG     PG     P  0  1  N  N  N  25.676   -9.745  -19.355   5.325   1.831   0.824  PG     0G4  25  
0G4  O3G    O3G    O  0  1  N  N  N  26.539  -11.034  -19.635   5.369   3.214   1.646  O3G    0G4  26  
0G4  O1G    O1G    O  0  1  N  N  N  26.010   -8.643  -20.367   6.112   0.804   1.542  O1G    0G4  27  
0G4  O2C    O2C    O  0  1  N  N  N  25.315   -9.201  -17.876   5.950   2.057  -0.643  O2C    0G4  28  
0G4  H1     H1     H  0  1  N  N  N  32.671  -15.359  -16.482  -5.333   4.530  -1.293  H1     0G4  29  
0G4  H2     H2     H  0  1  N  N  N  31.212  -16.074  -17.082  -6.417   4.406  -0.016  H2     0G4  30  
0G4  H3     H3     H  0  1  N  N  N  27.786  -12.891  -16.170  -3.096   0.436  -1.463  H3     0G4  31  
0G4  H4     H4     H  0  1  N  N  N  29.565  -10.033  -14.792  -4.858  -1.831   0.375  H4     0G4  32  
0G4  H5     H5     H  0  1  N  N  N  28.213  -12.279  -13.410  -3.006  -0.269   2.197  H5     0G4  33  
0G4  H6     H6     H  0  1  N  N  N  28.700  -10.673  -12.768  -4.222  -1.520   2.612  H6     0G4  34  
0G4  H7     H7     H  0  1  N  N  N  26.647   -8.839  -15.384  -3.057  -3.634  -0.226  H7     0G4  35  
0G4  H8     H8     H  0  1  N  N  N  25.604  -10.085  -17.275  -0.607  -3.959  -0.404  H8     0G4  36  
0G4  H9     H9     H  0  1  N  N  N  24.640  -10.488  -15.815  -1.188  -3.045  -1.816  H9     0G4  37  
0G4  H10    H10    H  0  1  N  N  N  23.275  -13.637  -16.634   0.861  -0.863  -2.858  H10    0G4  38  
0G4  H11    H11    H  0  1  N  N  N  21.991  -12.842  -19.427   3.789   0.748  -2.175  H11    0G4  39  
0G4  H12    H12    H  0  1  N  N  N  23.919  -10.130  -20.890   3.157   2.026   0.250  H12    0G4  40  
0G4  H13    H13    H  0  1  N  N  N  27.105  -10.881  -20.382   6.260   3.571   1.767  H13    0G4  41  
0G4  H14    H14    H  0  1  N  N  N  25.368   -8.253  -17.865   5.483   2.718  -1.171  H14    0G4  42  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0G4  O1B    PB     DOUB  N  N   1  
0G4  O1G    PG     DOUB  N  N   2  
0G4  N3B    PB     SING  N  N   3  
0G4  N3B    PG     SING  N  N   4  
0G4  PB     O2B    SING  N  N   5  
0G4  PB     O3A    SING  N  N   6  
0G4  O3G    PG     SING  N  N   7  
0G4  PG     O2C    SING  N  N   8  
0G4  O3A    PA     SING  N  N   9  
0G4  PA     O1A    DOUB  N  N  10  
0G4  PA     O2A    SING  N  N  11  
0G4  PA     "O5'"  SING  N  N  12  
0G4  F5     C5     SING  N  N  13  
0G4  N4     C4     SING  N  N  14  
0G4  "O5'"  "C5'"  SING  N  N  15  
0G4  C5     C4     SING  N  N  16  
0G4  C5     C6     DOUB  N  N  17  
0G4  "C5'"  "C4'"  SING  N  N  18  
0G4  C4     N3     DOUB  N  N  19  
0G4  C6     N1     SING  N  N  20  
0G4  "O4'"  "C4'"  SING  N  N  21  
0G4  "O4'"  "C1'"  SING  N  N  22  
0G4  N3     C2     SING  N  N  23  
0G4  N1     C2     SING  N  N  24  
0G4  N1     "C1'"  SING  N  N  25  
0G4  "C4'"  "S3'"  SING  N  N  26  
0G4  C2     O2     DOUB  N  N  27  
0G4  "C1'"  "C2'"  SING  N  N  28  
0G4  "S3'"  "C2'"  SING  N  N  29  
0G4  N4     H1     SING  N  N  30  
0G4  N4     H2     SING  N  N  31  
0G4  C6     H3     SING  N  N  32  
0G4  "C1'"  H4     SING  N  N  33  
0G4  "C2'"  H5     SING  N  N  34  
0G4  "C2'"  H6     SING  N  N  35  
0G4  "C4'"  H7     SING  N  N  36  
0G4  "C5'"  H8     SING  N  N  37  
0G4  "C5'"  H9     SING  N  N  38  
0G4  O2A    H10    SING  N  N  39  
0G4  O2B    H11    SING  N  N  40  
0G4  N3B    H12    SING  N  N  41  
0G4  O3G    H13    SING  N  N  42  
0G4  O2C    H14    SING  N  N  43  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0G4  InChI             InChI                 1.03   "InChI=1S/C8H14FN4O11P3S/c9-4-1-13(8(14)11-7(4)10)5-3-28-6(23-5)2-22-27(20,21)24-26(18,19)12-25(15,16)17/h1,5-6H,2-3H2,(H,20,21)(H2,10,11,14)(H4,12,15,16,17,18,19)/t5-,6+/m0/s1"  
0G4  InChIKey          InChI                 1.03   LBSQECIRXSOKHJ-NTSWFWBYSA-N  
0G4  SMILES_CANONICAL  CACTVS                3.370  "NC1=NC(=O)N(C=C1F)[C@@H]2CS[C@H](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)O2"  
0G4  SMILES            CACTVS                3.370  "NC1=NC(=O)N(C=C1F)[CH]2CS[CH](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)O2"  
0G4  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1[C@H](O[C@H](S1)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)N2C=C(C(=NC2=O)N)F"  
0G4  SMILES            "OpenEye OEToolkits"  1.7.6  "C1C(OC(S1)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)N2C=C(C(=NC2=O)N)F"  
#
_pdbx_chem_comp_identifier.comp_id          0G4
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.7.6
_pdbx_chem_comp_identifier.identifier       "[[[[(2R,5S)-5-(4-azanyl-5-fluoranyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0G4  "Create component"  2012-01-06  RCSB  
0G4  "Initial release"   2014-08-27  RCSB  
0G4  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     0G4
_pdbx_chem_comp_synonyms.name        "dCTP analog"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
