data_Z93
#

_chem_comp.id                                   Z93
_chem_comp.name                                 "2-{[(4R)-2,5-dioxo-4-(4-pyridin-3-ylphenyl)imidazolidin-4-yl]methyl}-6-methoxy-1-oxo-1H-isoindolium"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H19 N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N-[(1S)-2-AMINO-1-(2,4-DICHLOROBENZYL)ETHYL]-5-[2-(METHYLAMINO)PYRIMIDIN-4-YL]THIOPHENE-2-CARBOXAMIDE"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2010-01-16
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       427.432
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Z93
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3LEA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Z93  N1    N1    N  0  1  N  N  N  19.353  13.364   -4.810  -0.785   2.013   0.928  N1    Z93   1  
Z93  C2    C2    C  0  1  N  N  N  18.366  14.073   -5.456  -0.154   0.891   1.326  C2    Z93   2  
Z93  C3    C3    C  0  1  N  N  R  18.368  13.717   -6.979   0.278   0.190   0.054  C3    Z93   3  
Z93  N4    N4    N  0  1  N  N  N  19.415  12.681   -6.950  -0.205   1.083  -1.014  N4    Z93   4  
Z93  C5    C5    C  0  1  N  N  N  19.989  12.493   -5.651  -0.812   2.118  -0.406  C5    Z93   5  
Z93  O6    O6    O  0  1  N  N  N  20.890  11.711   -5.273  -1.327   3.044  -1.001  O6    Z93   6  
Z93  O7    O7    O  0  1  N  N  N  17.643  14.911   -4.939   0.031   0.520   2.466  O7    Z93   7  
Z93  C8    C8    C  0  1  Y  N  N  17.062  13.057   -7.361   1.779   0.065   0.001  C8    Z93   8  
Z93  C9    C9    C  0  1  Y  N  N  16.570  13.133   -8.696   2.535   1.073  -0.570  C9    Z93   9  
Z93  C10   C10   C  0  1  Y  N  N  15.345  12.536   -9.039   3.910   0.963  -0.621  C10   Z93  10  
Z93  C11   C11   C  0  1  Y  N  N  14.565  11.850   -8.068   4.536  -0.166  -0.096  C11   Z93  11  
Z93  C12   C12   C  0  1  Y  N  N  15.028  11.783   -6.721   3.770  -1.178   0.478  C12   Z93  12  
Z93  C13   C13   C  0  1  Y  N  N  16.264  12.370   -6.367   2.396  -1.055   0.528  C13   Z93  13  
Z93  C14   C14   C  0  1  Y  N  N  13.280  11.214   -8.436   6.014  -0.290  -0.149  C14   Z93  14  
Z93  C15   C15   C  0  1  Y  N  N  12.259  10.903   -7.476   6.651  -1.418   0.375  C15   Z93  15  
Z93  C16   C16   C  0  1  Y  N  N  11.044  10.311   -7.861   8.032  -1.485   0.302  C16   Z93  16  
Z93  C17   C17   C  0  1  Y  N  N  10.844  10.041   -9.211   8.730  -0.445  -0.282  C17   Z93  17  
Z93  N18   N18   N  0  1  Y  N  N  11.757  10.322  -10.189   8.101   0.608  -0.768  N18   Z93  18  
Z93  C19   C19   C  0  1  Y  N  N  12.953  10.903   -9.784   6.788   0.714  -0.726  C19   Z93  19  
Z93  N20   N20   N  1  1  N  N  N  20.059  15.499   -7.289  -1.834  -1.022  -0.174  N20   Z93  20  
Z93  C21   C21   C  0  1  N  N  N  20.272  16.286   -6.055  -2.526  -1.358  -1.229  C21   Z93  21  
Z93  C22   C22   C  0  1  N  N  N  21.247  15.020   -7.870  -2.627  -0.508   0.802  C22   Z93  22  
Z93  C23   C23   C  0  1  N  N  N  18.740  15.072   -7.769  -0.383  -1.185  -0.054  C23   Z93  23  
Z93  C24   C24   C  0  1  Y  N  N  22.360  15.532   -7.034  -4.027  -0.516   0.299  C24   Z93  24  
Z93  C25   C25   C  0  1  Y  N  N  21.764  16.282   -5.953  -3.949  -1.062  -1.001  C25   Z93  25  
Z93  C26   C26   C  0  1  Y  N  N  22.537  16.913   -4.985  -5.103  -1.210  -1.758  C26   Z93  26  
Z93  C27   C27   C  0  1  Y  N  N  23.944  16.756   -5.112  -6.326  -0.820  -1.233  C27   Z93  27  
Z93  C28   C28   C  0  1  Y  N  N  24.558  16.013   -6.185  -6.402  -0.283   0.042  C28   Z93  28  
Z93  C29   C29   C  0  1  Y  N  N  23.773  15.375   -7.180  -5.242  -0.131   0.814  C29   Z93  29  
Z93  O30   O30   O  0  1  N  N  N  21.349  14.352   -8.881  -2.259  -0.112   1.890  O30   Z93  30  
Z93  O31   O31   O  0  1  N  N  N  25.948  15.922   -6.358  -7.604   0.095   0.545  O31   Z93  31  
Z93  C32   C32   C  0  1  N  N  N  26.808  16.565   -5.376  -8.746  -0.088  -0.294  C32   Z93  32  
Z93  HN1   HN1   H  0  1  N  N  N  19.578  13.473   -3.842  -1.176   2.663   1.533  HN1   Z93  33  
Z93  HN4   HN4   H  0  1  N  N  N  19.697  12.161   -7.756  -0.105   0.950  -1.970  HN4   Z93  34  
Z93  H9    H9    H  0  1  N  N  N  17.143  13.653   -9.450   2.049   1.947  -0.977  H9    Z93  35  
Z93  H10   H10   H  0  1  N  N  N  14.990  12.599  -10.057   4.499   1.750  -1.068  H10   Z93  36  
Z93  H12   H12   H  0  1  N  N  N  14.434  11.283   -5.970   4.250  -2.055   0.886  H12   Z93  37  
Z93  H13   H13   H  0  1  N  N  N  16.616  12.306   -5.348   1.801  -1.837   0.977  H13   Z93  38  
Z93  H15   H15   H  0  1  N  N  N  12.429  11.129   -6.434   6.080  -2.216   0.826  H15   Z93  39  
Z93  H16   H16   H  0  1  N  N  N  10.287  10.072   -7.129   8.558  -2.342   0.697  H16   Z93  40  
Z93  H17   H17   H  0  1  N  N  N   9.911   9.582   -9.504   9.807  -0.494  -0.341  H17   Z93  41  
Z93  H19   H19   H  0  1  N  N  N  13.684  11.134  -10.545   6.309   1.589  -1.139  H19   Z93  42  
Z93  H21   H21   H  0  1  N  N  N  19.544  16.742   -5.401  -2.116  -1.787  -2.131  H21   Z93  43  
Z93  H23   H23   H  0  1  N  N  N  18.770  14.886   -8.853  -0.002  -1.703  -0.934  H23   Z93  44  
Z93  H23A  H23A  H  0  0  N  N  N  17.990  15.850   -7.567  -0.155  -1.769   0.838  H23A  Z93  45  
Z93  H26   H26   H  0  1  N  N  N  22.095  17.488   -4.185  -5.049  -1.626  -2.753  H26   Z93  46  
Z93  H27   H27   H  0  1  N  N  N  24.583  17.214   -4.371  -7.224  -0.934  -1.822  H27   Z93  47  
Z93  H29   H29   H  0  1  N  N  N  24.212  14.811   -7.990  -5.303   0.286   1.808  H29   Z93  48  
Z93  H32   H32   H  0  1  N  N  N  27.861  16.405   -5.649  -9.639   0.254   0.228  H32   Z93  49  
Z93  H32A  H32A  H  0  0  N  N  N  26.595  17.644   -5.353  -8.618   0.486  -1.212  H32A  Z93  50  
Z93  H32B  H32B  H  0  0  N  N  N  26.617  16.133   -4.383  -8.851  -1.145  -0.539  H32B  Z93  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Z93  N1   C2    SING  N  N   1  
Z93  N1   C5    SING  N  N   2  
Z93  C2   C3    SING  N  N   3  
Z93  C2   O7    DOUB  N  N   4  
Z93  C3   N4    SING  N  N   5  
Z93  C3   C8    SING  N  N   6  
Z93  C3   C23   SING  N  N   7  
Z93  N4   C5    SING  N  N   8  
Z93  C5   O6    DOUB  N  N   9  
Z93  C8   C9    DOUB  Y  N  10  
Z93  C8   C13   SING  Y  N  11  
Z93  C9   C10   SING  Y  N  12  
Z93  C10  C11   DOUB  Y  N  13  
Z93  C11  C12   SING  Y  N  14  
Z93  C11  C14   SING  Y  N  15  
Z93  C12  C13   DOUB  Y  N  16  
Z93  C14  C15   DOUB  Y  N  17  
Z93  C14  C19   SING  Y  N  18  
Z93  C15  C16   SING  Y  N  19  
Z93  C16  C17   DOUB  Y  N  20  
Z93  C17  N18   SING  Y  N  21  
Z93  N18  C19   DOUB  Y  N  22  
Z93  N20  C21   DOUB  N  N  23  
Z93  N20  C22   SING  N  N  24  
Z93  N20  C23   SING  N  N  25  
Z93  C21  C25   SING  N  N  26  
Z93  C22  C24   SING  N  N  27  
Z93  C22  O30   DOUB  N  N  28  
Z93  C24  C25   DOUB  Y  N  29  
Z93  C24  C29   SING  Y  N  30  
Z93  C25  C26   SING  Y  N  31  
Z93  C26  C27   DOUB  Y  N  32  
Z93  C27  C28   SING  Y  N  33  
Z93  C28  C29   DOUB  Y  N  34  
Z93  C28  O31   SING  N  N  35  
Z93  O31  C32   SING  N  N  36  
Z93  N1   HN1   SING  N  N  37  
Z93  N4   HN4   SING  N  N  38  
Z93  C9   H9    SING  N  N  39  
Z93  C10  H10   SING  N  N  40  
Z93  C12  H12   SING  N  N  41  
Z93  C13  H13   SING  N  N  42  
Z93  C15  H15   SING  N  N  43  
Z93  C16  H16   SING  N  N  44  
Z93  C17  H17   SING  N  N  45  
Z93  C19  H19   SING  N  N  46  
Z93  C21  H21   SING  N  N  47  
Z93  C23  H23   SING  N  N  48  
Z93  C23  H23A  SING  N  N  49  
Z93  C26  H26   SING  N  N  50  
Z93  C27  H27   SING  N  N  51  
Z93  C29  H29   SING  N  N  52  
Z93  C32  H32   SING  N  N  53  
Z93  C32  H32A  SING  N  N  54  
Z93  C32  H32B  SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Z93  SMILES_CANONICAL  CACTVS                3.352  "COc1ccc2C=[N+](C[C@]3(NC(=O)NC3=O)c4ccc(cc4)c5cccnc5)C(=O)c2c1"  
Z93  SMILES            CACTVS                3.352  "COc1ccc2C=[N+](C[C]3(NC(=O)NC3=O)c4ccc(cc4)c5cccnc5)C(=O)c2c1"  
Z93  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "COc1ccc2c(c1)C(=O)[N+](=C2)C[C@@]3(C(=O)NC(=O)N3)c4ccc(cc4)c5cccnc5"  
Z93  SMILES            "OpenEye OEToolkits"  1.7.0  "COc1ccc2c(c1)C(=O)[N+](=C2)CC3(C(=O)NC(=O)N3)c4ccc(cc4)c5cccnc5"  
Z93  InChI             InChI                 1.03   "InChI=1S/C24H18N4O4/c1-32-19-9-6-17-13-28(21(29)20(17)11-19)14-24(22(30)26-23(31)27-24)18-7-4-15(5-8-18)16-3-2-10-25-12-16/h2-13H,14H2,1H3,(H-,26,27,30,31)/p+1/t24-/m0/s1"  
Z93  InChIKey          InChI                 1.03   IPWWTFLYEBQOPS-DEOSSOPVSA-O  
#
_pdbx_chem_comp_identifier.comp_id          Z93
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.6.1
_pdbx_chem_comp_identifier.identifier       "(5R)-5-[(6-methoxy-1-oxo-isoindol-2-ium-2-yl)methyl]-5-(4-pyridin-3-ylphenyl)imidazolidine-2,4-dione"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Z93  "Create component"      2010-01-16  RCSB  
Z93  "Modify aromatic_flag"  2011-06-04  RCSB  
Z93  "Modify descriptor"     2011-06-04  RCSB  
Z93  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     Z93
_pdbx_chem_comp_synonyms.name        "N-[(1S)-2-AMINO-1-(2,4-DICHLOROBENZYL)ETHYL]-5-[2-(METHYLAMINO)PYRIMIDIN-4-YL]THIOPHENE-2-CARBOXAMIDE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
