data_YU3
# 
_chem_comp.id                                    YU3 
_chem_comp.name                                  "3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-7-[(1~{S})-1-(2-oxidanylidene-1~{H}-pyridin-3-yl)ethyl]-1~{H}-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H21 F N2 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-21 
_chem_comp.pdbx_modified_date                    2024-07-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        468.497 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YU3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PGG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YU3 C13  C1  C 0 1 Y N N N N N -1.720 -10.786 10.300 -0.643 1.981  0.219  C13  YU3 1  
YU3 C14  C2  C 0 1 N N N N N N -2.008 -9.457  9.677  -0.112 3.318  -0.059 C14  YU3 2  
YU3 C17  C3  C 0 1 Y N N N N N -1.270 -11.961 9.711  0.100  0.815  0.263  C17  YU3 3  
YU3 C10  C4  C 0 1 Y N N N N N -1.881 -12.933 13.104 -3.211 -0.464 1.006  C10  YU3 4  
YU3 C11  C5  C 0 1 Y N N N N N -1.731 -12.260 11.884 -2.108 0.334  0.705  C11  YU3 5  
YU3 C01  C6  C 0 1 N N N N N N -1.621 -12.459 15.571 -5.096 -0.068 2.568  C01  YU3 6  
YU3 C02  C7  C 0 1 N N S N N N -2.369 -12.096 14.316 -4.576 0.157  1.146  C02  YU3 7  
YU3 C03  C8  C 0 1 N N N N N N -3.803 -12.289 14.540 -5.521 -0.479 0.160  C03  YU3 8  
YU3 C04  C9  C 0 1 N N N N N N -4.266 -13.031 15.683 -6.448 -1.387 0.580  C04  YU3 9  
YU3 C05  C10 C 0 1 N N N N N N -5.684 -13.321 15.937 -7.316 -1.964 -0.357 C05  YU3 10 
YU3 C06  C11 C 0 1 N N N N N N -6.672 -12.742 14.979 -7.227 -1.619 -1.663 C06  YU3 11 
YU3 C08  C12 C 0 1 N N N N N N -4.730 -11.695 13.590 -5.460 -0.139 -1.203 C08  YU3 12 
YU3 C18  C13 C 0 1 Y N N N N N -0.778 -12.144 8.301  1.556  0.683  0.037  C18  YU3 13 
YU3 C19  C14 C 0 1 Y N N N N N -1.056 -13.280 7.577  2.459  1.279  0.919  C19  YU3 14 
YU3 C20  C15 C 0 1 Y N N N N N -0.554 -13.402 6.282  3.816  1.153  0.703  C20  YU3 15 
YU3 C21  C16 C 0 1 Y N N N N N 0.237  -12.411 5.715  4.284  0.437  -0.384 C21  YU3 16 
YU3 C22  C17 C 0 1 N N N N N N 0.787  -12.530 4.294  5.767  0.304  -0.613 C22  YU3 17 
YU3 C24  C18 C 0 1 N N N N N N -0.506 -10.107 3.373  8.148  -1.135 -0.164 C24  YU3 18 
YU3 C27  C19 C 0 1 Y N N N N N 0.525  -11.295 6.469  3.394  -0.158 -1.264 C27  YU3 19 
YU3 C29  C20 C 0 1 Y N N N N N 0.026  -11.147 7.755  2.033  -0.043 -1.056 C29  YU3 20 
YU3 C30  C21 C 0 1 Y N N N N N -1.277 -12.900 10.749 -0.841 -0.266 0.579  C30  YU3 21 
YU3 C31  C22 C 0 1 Y N N N N N -0.948 -14.253 10.820 -0.701 -1.645 0.755  C31  YU3 22 
YU3 C32  C23 C 0 1 Y N N N N N -1.097 -14.929 12.010 -1.796 -2.406 1.051  C32  YU3 23 
YU3 C33  C24 C 0 1 Y N N N N N -1.572 -14.285 13.155 -3.049 -1.820 1.176  C33  YU3 24 
YU3 F28  F1  F 0 1 N N N N N N 1.296  -10.318 5.923  3.857  -0.855 -2.324 F28  YU3 25 
YU3 N07  N1  N 0 1 N N N N N N -6.150 -11.949 13.840 -6.304 -0.715 -2.080 N07  YU3 26 
YU3 N12  N2  N 0 1 Y N N N N N -1.983 -10.981 11.580 -1.963 1.683  0.485  N12  YU3 27 
YU3 O09  O1  O 0 1 N N N N N N -4.301 -11.062 12.707 -4.635 0.672  -1.592 O09  YU3 28 
YU3 O15  O2  O 0 1 N N N N N N -2.592 -9.514  8.517  1.075  3.467  -0.281 O15  YU3 29 
YU3 O16  O3  O 0 1 N N N N N N -1.892 -8.410  10.351 -0.939 4.384  -0.069 O16  YU3 30 
YU3 O25  O4  O 0 1 N N N N N N 0.239  -12.074 1.726  6.232  -0.983 1.641  O25  YU3 31 
YU3 O26  O5  O 0 1 N N N N N N -1.673 -12.465 3.222  5.802  -2.321 -0.368 O26  YU3 32 
YU3 S23  S1  S 0 1 N N N N N N -0.348 -11.865 3.040  6.380  -1.174 0.240  S23  YU3 33 
YU3 H013 H1  H 0 0 N N N N N N -1.991 -11.849 16.408 -4.412 0.393  3.281  H013 YU3 34 
YU3 H012 H2  H 0 0 N N N N N N -1.778 -13.524 15.796 -6.084 0.382  2.669  H012 YU3 35 
YU3 H011 H3  H 0 0 N N N N N N -0.547 -12.270 15.425 -5.161 -1.138 2.765  H011 YU3 36 
YU3 H021 H4  H 0 0 N N N N N N -2.181 -11.036 14.092 -4.511 1.227  0.949  H021 YU3 37 
YU3 H041 H5  H 0 0 N N N N N N -3.534 -13.393 16.390 -6.513 -1.658 1.623  H041 YU3 38 
YU3 H051 H6  H 0 0 N N N N N N -5.997 -13.924 16.777 -8.054 -2.685 -0.038 H051 YU3 39 
YU3 H061 H7  H 0 0 N N N N N N -7.733 -12.896 15.111 -7.898 -2.067 -2.381 H061 YU3 40 
YU3 H191 H8  H 0 0 N N N N N N -1.656 -14.068 8.007  2.096  1.838  1.768  H191 YU3 41 
YU3 H201 H9  H 0 0 N N N N N N -0.785 -14.287 5.707  4.515  1.614  1.385  H201 YU3 42 
YU3 H221 H10 H 0 0 N N N N N N 0.968  -13.593 4.075  5.964  0.215  -1.681 H221 YU3 43 
YU3 H222 H11 H 0 0 N N N N N N 1.736  -11.977 4.237  6.276  1.186  -0.223 H222 YU3 44 
YU3 H243 H12 H 0 0 N N N N N N -0.951 -9.960  4.368  8.646  -1.988 0.297  H243 YU3 45 
YU3 H242 H13 H 0 0 N N N N N N 0.488  -9.637  3.343  8.275  -1.182 -1.246 H242 YU3 46 
YU3 H241 H14 H 0 0 N N N N N N -1.152 -9.646  2.611  8.587  -0.211 0.213  H241 YU3 47 
YU3 H291 H15 H 0 0 N N N N N N 0.260  -10.263 8.330  1.339  -0.507 -1.741 H291 YU3 48 
YU3 H311 H16 H 0 0 N N N N N N -0.578 -14.768 9.946  0.270  -2.107 0.659  H311 YU3 49 
YU3 H321 H17 H 0 0 N N N N N N -0.842 -15.977 12.059 -1.687 -3.472 1.186  H321 YU3 50 
YU3 H331 H18 H 0 0 N N N N N N -1.698 -14.836 14.075 -3.905 -2.436 1.410  H331 YU3 51 
YU3 H071 H19 H 0 0 N N N N N N -6.813 -11.561 13.199 -6.257 -0.476 -3.019 H071 YU3 52 
YU3 H121 H20 H 0 0 N N N N N N -2.316 -10.286 12.218 -2.684 2.332  0.516  H121 YU3 53 
YU3 H1   H21 H 0 1 N N N N N N -2.292 -7.686  9.884  -0.497 5.222  -0.262 H1   YU3 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YU3 O25 S23  DOUB N N 1  
YU3 S23 O26  DOUB N N 2  
YU3 S23 C24  SING N N 3  
YU3 S23 C22  SING N N 4  
YU3 C22 C21  SING N N 5  
YU3 C21 C20  DOUB Y N 6  
YU3 C21 C27  SING Y N 7  
YU3 F28 C27  SING N N 8  
YU3 C20 C19  SING Y N 9  
YU3 C27 C29  DOUB Y N 10 
YU3 C19 C18  DOUB Y N 11 
YU3 C29 C18  SING Y N 12 
YU3 C18 C17  SING N N 13 
YU3 O15 C14  DOUB N N 14 
YU3 C14 C13  SING N N 15 
YU3 C14 O16  SING N N 16 
YU3 C17 C13  DOUB Y N 17 
YU3 C17 C30  SING Y N 18 
YU3 C13 N12  SING Y N 19 
YU3 C30 C31  DOUB Y N 20 
YU3 C30 C11  SING Y N 21 
YU3 C31 C32  SING Y N 22 
YU3 N12 C11  SING Y N 23 
YU3 C11 C10  DOUB Y N 24 
YU3 C32 C33  DOUB Y N 25 
YU3 O09 C08  DOUB N N 26 
YU3 C10 C33  SING Y N 27 
YU3 C10 C02  SING N N 28 
YU3 C08 N07  SING N N 29 
YU3 C08 C03  SING N N 30 
YU3 N07 C06  SING N N 31 
YU3 C02 C03  SING N N 32 
YU3 C02 C01  SING N N 33 
YU3 C03 C04  DOUB N N 34 
YU3 C06 C05  DOUB N N 35 
YU3 C04 C05  SING N N 36 
YU3 C01 H013 SING N N 37 
YU3 C01 H012 SING N N 38 
YU3 C01 H011 SING N N 39 
YU3 C02 H021 SING N N 40 
YU3 C04 H041 SING N N 41 
YU3 C05 H051 SING N N 42 
YU3 C06 H061 SING N N 43 
YU3 C19 H191 SING N N 44 
YU3 C20 H201 SING N N 45 
YU3 C22 H221 SING N N 46 
YU3 C22 H222 SING N N 47 
YU3 C24 H243 SING N N 48 
YU3 C24 H242 SING N N 49 
YU3 C24 H241 SING N N 50 
YU3 C29 H291 SING N N 51 
YU3 C31 H311 SING N N 52 
YU3 C32 H321 SING N N 53 
YU3 C33 H331 SING N N 54 
YU3 N07 H071 SING N N 55 
YU3 N12 H121 SING N N 56 
YU3 O16 H1   SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YU3 InChI            InChI                1.06  "InChI=1S/C24H21FN2O5S/c1-13(17-7-4-10-26-23(17)28)16-5-3-6-18-20(22(24(29)30)27-21(16)18)14-8-9-15(19(25)11-14)12-33(2,31)32/h3-11,13,27H,12H2,1-2H3,(H,26,28)(H,29,30)/t13-/m0/s1" 
YU3 InChIKey         InChI                1.06  KPFIGINTOHZVNI-ZDUSSCGKSA-N                                                                                                                                                          
YU3 SMILES_CANONICAL CACTVS               3.385 "C[C@H](C1=CC=CNC1=O)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4"                                                                                                             
YU3 SMILES           CACTVS               3.385 "C[CH](C1=CC=CNC1=O)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4"                                                                                                              
YU3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)C4=CC=CNC4=O"                                                                                                              
YU3 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)C4=CC=CNC4=O"                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           YU3 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-7-[(1~{S})-1-(2-oxidanylidene-1~{H}-pyridin-3-yl)ethyl]-1~{H}-indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YU3 "Create component" 2023-06-21 PDBE 
YU3 "Initial release"  2024-07-10 RCSB 
# 
