data_YO3
#

_chem_comp.id                                   YO3
_chem_comp.name                                 YO3-biotin
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H19 N2 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "3-methyl-2-[(1E,3E)-3-(1-methylquinolin-4(1H)-ylidene)prop-1-en-1-yl]-1,3-benzoxazol-3-ium"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2019-10-17
_chem_comp.pdbx_modified_date                   2020-10-16
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       315.388
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YO3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6UP0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YO3  C01  C1   C  0  1  N  N  N  -11.210   3.456   -6.042   5.552  -2.663   0.005  C01  YO3   1  
YO3  C03  C2   C  0  1  N  N  N  -12.133   4.943   -7.658   3.153  -2.219  -0.001  C03  YO3   2  
YO3  C04  C3   C  0  1  N  N  N  -12.918   6.035   -8.007   2.070  -1.421  -0.001  C04  YO3   3  
YO3  C05  C4   C  0  1  N  N  N  -13.569   6.729   -6.994   2.226  -0.008  -0.001  C05  YO3   4  
YO3  C06  C5   C  0  1  N  N  N  -14.333   7.753   -7.263   1.121   0.836  -0.001  C06  YO3   5  
YO3  C07  C6   C  0  1  N  N  N  -14.630   7.973   -8.745  -0.168   0.299  -0.000  C07  YO3   6  
YO3  C08  C7   C  0  1  N  N  N  -15.494   8.862   -9.165  -1.253   1.129   0.000  C08  YO3   7  
YO3  C09  C8   C  0  1  Y  N  N  -15.606   8.893  -10.672  -2.555   0.586   0.001  C09  YO3   8  
YO3  C11  C9   C  0  1  Y  N  N  -15.212   8.506  -12.774  -4.193  -0.864  -0.003  C11  YO3   9  
YO3  C12  C10  C  0  1  Y  N  N  -14.754   8.096  -14.040  -5.045  -1.955  -0.003  C12  YO3  10  
YO3  C13  C11  C  0  1  Y  N  N  -15.388   8.589  -15.177  -6.413  -1.762   0.000  C13  YO3  11  
YO3  C14  C12  C  0  1  Y  N  N  -16.452   9.486  -15.077  -6.942  -0.480   0.004  C14  YO3  12  
YO3  C15  C13  C  0  1  Y  N  N  -16.887   9.890  -13.831  -6.109   0.618   0.004  C15  YO3  13  
YO3  C16  C14  C  0  1  Y  N  N  -16.255   9.392  -12.677  -4.724   0.437   0.001  C16  YO3  14  
YO3  C18  C15  C  0  1  N  N  N  -17.486  10.492  -10.782  -3.756   2.754   0.001  C18  YO3  15  
YO3  C19  C16  C  0  1  Y  N  N  -13.451   6.357   -5.656   3.599   0.534  -0.001  C19  YO3  16  
YO3  C20  C17  C  0  1  Y  N  N  -14.144   7.100   -4.652   3.838   1.906  -0.000  C20  YO3  17  
YO3  C21  C18  C  0  1  Y  N  N  -14.020   6.716   -3.319   5.136   2.371   0.001  C21  YO3  18  
YO3  C22  C19  C  0  1  Y  N  N  -13.213   5.613   -2.993   6.199   1.480   0.001  C22  YO3  19  
YO3  C23  C20  C  0  1  Y  N  N  -12.540   4.896   -3.988   5.977   0.119  -0.001  C23  YO3  20  
YO3  C24  C21  C  0  1  Y  N  N  -12.668   5.287   -5.360   4.675  -0.369  -0.001  C24  YO3  21  
YO3  N02  N1   N  0  1  N  N  N  -12.030   4.606   -6.371   4.424  -1.728  -0.001  N02  YO3  22  
YO3  N17  N2   N  1  1  Y  N  N  -16.475   9.618  -11.361  -3.670   1.291   0.001  N17  YO3  23  
YO3  O10  O1   O  0  1  Y  N  N  -14.802   8.194  -11.499  -2.846  -0.731  -0.005  O10  YO3  24  
YO3  H1   H1   H  0  1  N  N  N  -11.218   3.299   -4.953   5.175  -3.686   0.009  H1   YO3  25  
YO3  H2   H2   H  0  1  N  N  N  -11.612   2.564   -6.544   6.161  -2.503  -0.885  H2   YO3  26  
YO3  H3   H3   H  0  1  N  N  N  -10.178   3.633   -6.379   6.158  -2.496   0.895  H3   YO3  27  
YO3  H4   H4   H  0  1  N  N  N  -11.614   4.376   -8.417   3.009  -3.290   0.003  H4   YO3  28  
YO3  H5   H5   H  0  1  N  N  N  -13.020   6.337   -9.039   1.081  -1.854  -0.001  H5   YO3  29  
YO3  H6   H6   H  0  1  N  N  N  -14.727   8.399   -6.492   1.260   1.907  -0.001  H6   YO3  30  
YO3  H7   H7   H  0  1  N  N  N  -14.107   7.372   -9.474  -0.306  -0.772  -0.000  H7   YO3  31  
YO3  H8   H8   H  0  1  N  N  N  -16.064   9.502   -8.508  -1.114   2.200  -0.000  H8   YO3  32  
YO3  H10  H10  H  0  1  N  N  N  -13.924   7.410  -14.128  -4.641  -2.957  -0.006  H10  YO3  33  
YO3  H11  H11  H  0  1  N  N  N  -15.051   8.272  -16.153  -7.075  -2.615  -0.000  H11  YO3  34  
YO3  H12  H12  H  0  1  N  N  N  -16.932   9.862  -15.969  -8.013  -0.342   0.005  H12  YO3  35  
YO3  H13  H13  H  0  1  N  N  N  -17.709  10.585  -13.742  -6.526   1.614   0.006  H13  YO3  36  
YO3  H14  H14  H  0  1  N  N  N  -17.412  10.462   -9.685  -3.777   3.116   1.028  H14  YO3  37  
YO3  H15  H15  H  0  1  N  N  N  -17.324  11.522  -11.133  -2.889   3.169  -0.513  H15  YO3  38  
YO3  H16  H16  H  0  1  N  N  N  -18.485  10.152  -11.091  -4.666   3.064  -0.513  H16  YO3  39  
YO3  H17  H17  H  0  1  N  N  N  -14.756   7.948   -4.923   3.012   2.602  -0.001  H17  YO3  40  
YO3  H18  H18  H  0  1  N  N  N  -14.539   7.260   -2.544   5.326   3.434   0.002  H18  YO3  41  
YO3  H19  H19  H  0  1  N  N  N  -13.111   5.315   -1.960   7.212   1.857   0.001  H19  YO3  42  
YO3  H20  H20  H  0  1  N  N  N  -11.925   4.049   -3.722   6.812  -0.566  -0.002  H20  YO3  43  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YO3  C13  C14  DOUB  Y  N   1  
YO3  C13  C12  SING  Y  N   2  
YO3  C14  C15  SING  Y  N   3  
YO3  C12  C11  DOUB  Y  N   4  
YO3  C15  C16  DOUB  Y  N   5  
YO3  C11  C16  SING  Y  N   6  
YO3  C11  O10  SING  Y  N   7  
YO3  C16  N17  SING  Y  N   8  
YO3  O10  C09  SING  Y  N   9  
YO3  N17  C18  SING  N  N  10  
YO3  N17  C09  DOUB  Y  N  11  
YO3  C09  C08  SING  N  N  12  
YO3  C08  C07  DOUB  N  E  13  
YO3  C07  C06  SING  N  N  14  
YO3  C04  C03  DOUB  N  N  15  
YO3  C04  C05  SING  N  N  16  
YO3  C03  N02  SING  N  N  17  
YO3  C06  C05  DOUB  N  E  18  
YO3  C05  C19  SING  N  N  19  
YO3  N02  C01  SING  N  N  20  
YO3  N02  C24  SING  N  N  21  
YO3  C19  C24  DOUB  Y  N  22  
YO3  C19  C20  SING  Y  N  23  
YO3  C24  C23  SING  Y  N  24  
YO3  C20  C21  DOUB  Y  N  25  
YO3  C23  C22  DOUB  Y  N  26  
YO3  C21  C22  SING  Y  N  27  
YO3  C01  H1   SING  N  N  28  
YO3  C01  H2   SING  N  N  29  
YO3  C01  H3   SING  N  N  30  
YO3  C03  H4   SING  N  N  31  
YO3  C04  H5   SING  N  N  32  
YO3  C06  H6   SING  N  N  33  
YO3  C07  H7   SING  N  N  34  
YO3  C08  H8   SING  N  N  35  
YO3  C12  H10  SING  N  N  36  
YO3  C13  H11  SING  N  N  37  
YO3  C14  H12  SING  N  N  38  
YO3  C15  H13  SING  N  N  39  
YO3  C18  H14  SING  N  N  40  
YO3  C18  H15  SING  N  N  41  
YO3  C18  H16  SING  N  N  42  
YO3  C20  H17  SING  N  N  43  
YO3  C21  H18  SING  N  N  44  
YO3  C22  H19  SING  N  N  45  
YO3  C23  H20  SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YO3  SMILES            ACDLabs               12.01  "CN2C=CC(c1c2cccc1)=[C@H][C@H]=[C@H]c3[n+](c4c(o3)cccc4)C"  
YO3  InChI             InChI                 1.03   "InChI=1S/C21H19N2O/c1-22-15-14-16(17-9-3-4-10-18(17)22)8-7-13-21-23(2)19-11-5-6-12-20(19)24-21/h3-15H,1-2H3/q+1"  
YO3  InChIKey          InChI                 1.03   VHMUTYCKXYROKA-UHFFFAOYSA-N  
YO3  SMILES_CANONICAL  CACTVS                3.385  "CN1C=C\C(=C/C=C/c2oc3ccccc3[n+]2C)c4ccccc14"  
YO3  SMILES            CACTVS                3.385  "CN1C=CC(=CC=Cc2oc3ccccc3[n+]2C)c4ccccc14"  
YO3  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[n+]1c2ccccc2oc1/C=C/C=C/3\C=CN(c4c3cccc4)C"  
YO3  SMILES            "OpenEye OEToolkits"  2.0.7  "C[n+]1c2ccccc2oc1C=CC=C3C=CN(c4c3cccc4)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YO3  "SYSTEMATIC NAME"  ACDLabs               12.01  "3-methyl-2-[(1E,3E)-3-(1-methylquinolin-4(1H)-ylidene)prop-1-en-1-yl]-1,3-benzoxazol-3-ium"  
YO3  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "3-methyl-2-[(~{E},3~{E})-3-(1-methylquinolin-4-ylidene)prop-1-enyl]-1,3-benzoxazol-3-ium"  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     YO3
_pdbx_chem_comp_synonyms.name        "3-methyl-2-[(1E,3E)-3-(1-methylquinolin-4(1H)-ylidene)prop-1-en-1-yl]-1,3-benzoxazol-3-ium"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YO3  "Create component"  2019-10-17  RCSB  
YO3  "Modify synonyms"   2020-06-05  PDBE  
YO3  "Initial release"   2020-10-21  RCSB  
##
