data_Y43
# 
_chem_comp.id                                    Y43 
_chem_comp.name                                  
;2'-deoxyinosine 5'-triphosphate
;
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H15 N4 O13 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-03 
_chem_comp.pdbx_modified_date                    2023-04-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        492.166 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y43 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FN3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y43 C4  C1  C 0 1 Y N N -22.194 48.455 5.048 5.618  0.769  -0.383 C4  Y43 1  
Y43 C5  C2  C 0 1 Y N N -23.328 48.363 5.752 6.003  1.668  0.608  C5  Y43 2  
Y43 C6  C3  C 0 1 N N N -23.964 49.481 6.140 7.250  2.410  0.412  C6  Y43 3  
Y43 C8  C4  C 0 1 Y N N -22.623 46.354 5.356 4.137  0.773  1.242  C8  Y43 4  
Y43 N1  N1  N 0 1 N N N -23.454 50.756 5.798 7.957  2.186  -0.712 N1  Y43 5  
Y43 N3  N2  N 0 1 N N N -21.691 49.651 4.707 6.414  0.623  -1.485 N3  Y43 6  
Y43 C2  C5  C 0 1 N N N -22.347 50.844 5.088 7.550  1.332  -1.611 C2  Y43 7  
Y43 CAB C6  C 0 1 N N S -19.342 45.106 4.952 2.894  -3.065 -0.309 CAB Y43 8  
Y43 CAC C7  C 0 1 N N N -19.274 46.627 4.855 4.174  -2.201 -0.373 CAC Y43 9  
Y43 CAD C8  C 0 1 N N R -20.528 46.895 4.016 3.652  -0.781 -0.686 CAD Y43 10 
Y43 CAF C9  C 0 1 N N R -19.744 44.775 3.555 1.749  -2.066 -0.589 CAF Y43 11 
Y43 CAG C10 C 0 1 N N N -20.258 43.341 3.519 0.525  -2.406 0.264  CAG Y43 12 
Y43 N7  N3  N 0 1 Y N N -23.592 47.062 5.954 5.061  1.629  1.578  N7  Y43 13 
Y43 N9  N4  N 0 1 Y N N -21.759 47.219 4.796 4.442  0.222  0.032  N9  Y43 14 
Y43 O6  O1  O 0 1 N N N -25.007 49.412 6.800 7.639  3.211  1.247  O6  Y43 15 
Y43 OAA O2  O 0 1 N N N -18.065 44.539 5.213 2.927  -4.083 -1.311 OAA Y43 16 
Y43 OAE O3  O 0 1 N N N -20.889 45.606 3.473 2.287  -0.776 -0.216 OAE Y43 17 
Y43 OAH O4  O 0 1 N N N -21.430 43.258 4.367 -0.558 -1.546 -0.094 OAH Y43 18 
Y43 OAJ O5  O 0 1 N N N -23.302 42.142 5.847 -2.693 -3.039 0.261  OAJ Y43 19 
Y43 OAK O6  O 0 1 N N N -21.706 40.679 4.452 -1.855 -1.492 2.071  OAK Y43 20 
Y43 OAL O7  O 0 1 N N N -20.918 41.831 6.657 -2.934 -0.430 0.052  OAL Y43 21 
Y43 OAN O8  O 0 1 N N N -18.667 41.183 5.325 -5.177 -0.719 1.172  OAN Y43 22 
Y43 OAO O9  O 0 1 N N N -18.587 42.880 7.241 -3.873 1.370  1.723  OAO Y43 23 
Y43 OAP O10 O 0 1 N N N -19.015 40.444 7.867 -5.004 1.042  -0.627 OAP Y43 24 
Y43 OAR O11 O 0 1 N N N -20.166 38.525 6.357 -6.850 2.452  0.361  OAR Y43 25 
Y43 OAS O12 O 0 1 N N N -18.206 37.966 7.937 -6.479 2.618  -2.130 OAS Y43 26 
Y43 OAT O13 O 0 1 N N N -20.562 38.660 8.914 -7.537 0.470  -1.043 OAT Y43 27 
Y43 PAI P1  P 0 1 N N N -21.831 41.909 5.265 -2.007 -1.624 0.605  PAI Y43 28 
Y43 PAM P2  P 0 1 N N N -19.299 41.650 6.761 -4.267 0.294  0.593  PAM Y43 29 
Y43 PAQ P3  P 0 1 N N N -19.547 38.888 7.835 -6.476 1.663  -0.833 PAQ Y43 30 
Y43 H1  H1  H 0 1 N N N -22.549 45.277 5.329 3.262  0.539  1.830  H1  Y43 31 
Y43 H2  H2  H 0 1 N N N -20.844 49.699 4.178 6.158  0.000  -2.183 H2  Y43 32 
Y43 H3  H3  H 0 1 N N N -21.950 51.807 4.803 8.153  1.189  -2.496 H3  Y43 33 
Y43 H4  H4  H 0 1 N N N -20.104 44.789 5.679 2.781  -3.507 0.681  H4  Y43 34 
Y43 H5  H5  H 0 1 N N N -18.360 46.963 4.343 4.692  -2.214 0.586  H5  Y43 35 
Y43 H6  H6  H 0 1 N N N -19.336 47.103 5.845 4.832  -2.552 -1.167 H6  Y43 36 
Y43 H7  H7  H 0 1 N N N -20.331 47.643 3.234 3.687  -0.592 -1.759 H7  Y43 37 
Y43 H8  H8  H 0 1 N N N -18.963 44.977 2.807 1.488  -2.076 -1.647 H8  Y43 38 
Y43 H9  H9  H 0 1 N N N -20.525 43.067 2.488 0.238  -3.443 0.090  H9  Y43 39 
Y43 H10 H10 H 0 1 N N N -19.480 42.657 3.891 0.767  -2.268 1.317  H10 Y43 40 
Y43 H11 H11 H 0 1 N N N -17.802 44.746 6.102 3.645  -4.721 -1.200 H11 Y43 41 
Y43 H12 H12 H 0 1 N N N -23.870 41.433 5.568 -2.824 -3.194 -0.685 H12 Y43 42 
Y43 H13 H13 H 0 1 N N N -17.921 43.127 6.610 -3.277 2.066  1.413  H13 Y43 43 
Y43 H14 H14 H 0 1 N N N -18.110 37.457 7.141 -7.335 3.027  -2.315 H14 Y43 44 
Y43 H15 H15 H 0 1 N N N -21.371 38.347 8.527 -7.353 -0.089 -1.810 H15 Y43 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y43 OAE CAF SING N N 1  
Y43 OAE CAD SING N N 2  
Y43 CAG CAF SING N N 3  
Y43 CAG OAH SING N N 4  
Y43 CAF CAB SING N N 5  
Y43 CAD N9  SING N N 6  
Y43 CAD CAC SING N N 7  
Y43 OAH PAI SING N N 8  
Y43 OAK PAI DOUB N N 9  
Y43 N3  C4  SING N N 10 
Y43 N3  C2  SING N N 11 
Y43 N9  C4  SING Y N 12 
Y43 N9  C8  SING Y N 13 
Y43 CAC CAB SING N N 14 
Y43 CAB OAA SING N N 15 
Y43 C4  C5  DOUB Y N 16 
Y43 C2  N1  DOUB N N 17 
Y43 PAI OAJ SING N N 18 
Y43 PAI OAL SING N N 19 
Y43 OAN PAM DOUB N N 20 
Y43 C8  N7  DOUB Y N 21 
Y43 C5  N7  SING Y N 22 
Y43 C5  C6  SING N N 23 
Y43 N1  C6  SING N N 24 
Y43 C6  O6  DOUB N N 25 
Y43 OAR PAQ DOUB N N 26 
Y43 OAL PAM SING N N 27 
Y43 PAM OAO SING N N 28 
Y43 PAM OAP SING N N 29 
Y43 PAQ OAP SING N N 30 
Y43 PAQ OAS SING N N 31 
Y43 PAQ OAT SING N N 32 
Y43 C8  H1  SING N N 33 
Y43 N3  H2  SING N N 34 
Y43 C2  H3  SING N N 35 
Y43 CAB H4  SING N N 36 
Y43 CAC H5  SING N N 37 
Y43 CAC H6  SING N N 38 
Y43 CAD H7  SING N N 39 
Y43 CAF H8  SING N N 40 
Y43 CAG H9  SING N N 41 
Y43 CAG H10 SING N N 42 
Y43 OAA H11 SING N N 43 
Y43 OAJ H12 SING N N 44 
Y43 OAO H13 SING N N 45 
Y43 OAS H14 SING N N 46 
Y43 OAT H15 SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y43 SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC1OC(CC1O)n1cnc2c1NC=NC2=O"                                                                                                                                    
Y43 InChI            InChI                1.06  "InChI=1S/C10H15N4O13P3/c15-5-1-7(14-4-13-8-9(14)11-3-12-10(8)16)25-6(5)2-24-29(20,21)27-30(22,23)26-28(17,18)19/h3-7,15H,1-2H2,(H,20,21)(H,22,23)(H,11,12,16)(H2,17,18,19)/t5-,6+,7+/m0/s1" 
Y43 InChIKey         InChI                1.06  UFJPAQSLHAGEBL-RRKCRQDMSA-N                                                                                                                                                                  
Y43 SMILES_CANONICAL CACTVS               3.385 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)n2cnc3C(=O)N=CNc23"                                                                                                              
Y43 SMILES           CACTVS               3.385 "O[CH]1C[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)n2cnc3C(=O)N=CNc23"                                                                                                                   
Y43 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)NC=NC2=O"                                                                                                                   
Y43 SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)NC=NC2=O"                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y43 "SYSTEMATIC NAME" ACDLabs              12.01 
;2'-deoxyinosine 5'-(tetrahydrogen triphosphate)
;
Y43 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},5~{R})-3-oxidanyl-5-(6-oxidanylidene-3~{H}-purin-9-yl)oxolan-2-yl]methyl [oxidanyl(phosphonooxy)phosphoryl] hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y43 "Create component" 2023-01-03 RCSB 
Y43 "Initial release"  2023-05-03 RCSB 
# 
