data_Y23
# 
_chem_comp.id                                    Y23 
_chem_comp.name                                  "4-({6-chloro-2-[3-(1H-imidazol-5-yl)propanoyl]-1,2,3,4-tetrahydro-9H-pyrido[3,4-b]indol-9-yl}methyl)benzonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H22 Cl N5 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-09 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        443.928 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y23 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G42 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y23 C01  C1  C  0 1 Y N N N N N -12.280 9.481  45.330 -0.180 1.202  0.281  C01  Y23 1  
Y23 C02  C2  C  0 1 Y N N N N N -13.017 8.223  45.064 -0.440 0.072  -0.413 C02  Y23 2  
Y23 C05  C3  C  0 1 N N N N N N -12.937 9.256  47.712 1.766  0.108  1.351  C05  Y23 3  
Y23 C06  C4  C  0 1 N N N N N N -12.396 10.120 46.740 1.072  1.449  1.082  C06  Y23 4  
Y23 C07  C5  C  0 1 Y N N N N N -11.622 9.822  44.160 -1.312 2.085  0.090  C07  Y23 5  
Y23 N09  N1  N  0 1 Y N N N N N -12.775 7.845  43.774 -1.658 0.173  -1.031 N09  Y23 6  
Y23 C10  C6  C  0 1 Y N N N N N -10.239 10.974 42.552 -2.798 3.920  0.167  C10  Y23 7  
Y23 C11  C7  C  0 1 Y N N N N N -10.559 9.984  41.587 -3.686 3.241  -0.654 C11  Y23 8  
Y23 C13  C8  C  0 1 Y N N N N N -10.765 10.905 43.862 -1.601 3.370  0.559  C13  Y23 9  
Y23 C15  C9  C  0 1 Y N N N N N -12.469 5.468  43.218 -3.100 -1.778 -1.016 C15  Y23 10 
Y23 C16  C10 C  0 1 Y N N N N N -12.933 4.479  44.088 -4.437 -1.492 -0.802 C16  Y23 11 
Y23 C17  C11 C  0 1 Y N N N N N -12.212 3.316  44.216 -5.209 -2.330 -0.025 C17  Y23 12 
Y23 C18  C12 C  0 1 Y N N N N N -11.044 3.150  43.466 -4.639 -3.469 0.548  C18  Y23 13 
Y23 C19  C13 C  0 1 Y N N N N N -10.572 4.120  42.570 -3.289 -3.751 0.328  C19  Y23 14 
Y23 C20  C14 C  0 1 Y N N N N N -11.315 5.309  42.448 -2.529 -2.905 -0.452 C20  Y23 15 
Y23 C21  C15 C  0 1 N N N N N N -10.273 1.886  43.616 -5.434 -4.343 1.356  C21  Y23 16 
Y23 C24  C16 C  0 1 N N N N N N -15.431 8.762  47.746 2.956  -0.989 -0.491 C24  Y23 17 
Y23 C25  C17 C  0 1 N N N N N N -15.763 9.791  48.849 4.259  -0.536 0.115  C25  Y23 18 
Y23 C27  C18 C  0 1 N N N N N N -16.582 10.878 48.182 5.421  -1.022 -0.753 C27  Y23 19 
Y23 C28  C19 C  0 1 Y N N N N N -16.718 12.162 48.963 6.725  -0.569 -0.147 C28  Y23 20 
Y23 C03  C20 C  0 1 N N N N N N -13.848 7.616  46.240 0.505  -1.108 -0.470 C03  Y23 21 
Y23 N04  N2  N  0 1 N N N N N N -14.056 8.541  47.242 1.789  -0.675 0.106  N04  Y23 22 
Y23 C08  C21 C  0 1 Y N N N N N -11.898 8.812  43.178 -2.217 1.387  -0.750 C08  Y23 23 
Y23 C12  C22 C  0 1 Y N N N N N -11.388 8.879  41.865 -3.424 1.969  -1.132 C12  Y23 24 
Y23 C14  C23 C  0 1 N N N N N N -13.318 6.698  43.095 -2.265 -0.861 -1.872 C14  Y23 25 
Y23 N22  N3  N  0 1 N N N N N N -9.696  0.909  43.743 -6.065 -5.036 1.998  N22  Y23 26 
Y23 CL23 CL1 CL 0 0 N N N N N N -9.230  12.300 42.071 -3.212 5.513  0.718  CL23 Y23 27 
Y23 O26  O1  O  0 1 N N N N N N -16.328 8.074  47.239 2.957  -1.636 -1.517 O26  Y23 28 
Y23 N29  N4  N  0 1 Y N N N N N -17.667 13.092 48.746 7.528  -1.291 0.694  N29  Y23 29 
Y23 C30  C24 C  0 1 Y N N N N N -17.488 14.127 49.619 8.590  -0.514 0.998  C30  Y23 30 
Y23 N31  N5  N  0 1 Y N N N N N -16.402 13.827 50.382 8.460  0.630  0.383  N31  Y23 31 
Y23 C32  C25 C  0 1 Y N N N N N -15.925 12.627 49.987 7.325  0.622  -0.332 C32  Y23 32 
Y23 H35  H1  H  0 1 N N N N N N -13.242 9.854  48.583 2.787  0.286  1.689  H35  Y23 33 
Y23 H36  H2  H  0 1 N N N N N N -12.161 8.537  48.014 1.218  -0.439 2.118  H36  Y23 34 
Y23 H38  H3  H  0 1 N N N N N N -11.391 10.424 47.067 1.742  2.100  0.521  H38  Y23 35 
Y23 H37  H4  H  0 1 N N N N N N -13.042 11.008 46.667 0.812  1.921  2.030  H37  Y23 36 
Y23 H39  H5  H  0 1 N N N N N N -10.148 10.082 40.593 -4.613 3.722  -0.930 H39  Y23 37 
Y23 H41  H6  H  0 1 N N N N N N -10.522 11.650 44.605 -0.916 3.906  1.199  H41  Y23 38 
Y23 H44  H7  H  0 1 N N N N N N -13.843 4.626  44.651 -4.877 -0.611 -1.245 H44  Y23 39 
Y23 H45  H8  H  0 1 N N N N N N -12.544 2.539  44.889 -6.252 -2.105 0.142  H45  Y23 40 
Y23 H46  H9  H  0 1 N N N N N N -9.672  3.961  41.995 -2.841 -4.630 0.767  H46  Y23 41 
Y23 H47  H10 H  0 1 N N N N N N -10.997 6.087  41.769 -1.485 -3.122 -0.623 H47  Y23 42 
Y23 H48  H11 H  0 1 N N N N N N -16.344 9.315  49.652 4.275  0.552  0.170  H48  Y23 43 
Y23 H49  H12 H  0 1 N N N N N N -14.837 10.214 49.267 4.357  -0.952 1.118  H49  Y23 44 
Y23 H51  H13 H  0 1 N N N N N N -16.108 11.116 47.218 5.405  -2.110 -0.807 H51  Y23 45 
Y23 H50  H14 H  0 1 N N N N N N -17.592 10.481 48.005 5.324  -0.606 -1.756 H50  Y23 46 
Y23 H34  H15 H  0 1 N N N N N N -14.822 7.282  45.854 0.098  -1.936 0.111  H34  Y23 47 
Y23 H33  H16 H  0 1 N N N N N N -13.303 6.755  46.655 0.649  -1.417 -1.505 H33  Y23 48 
Y23 H40  H17 H  0 1 N N N N N N -11.618 8.131  41.120 -4.124 1.451  -1.771 H40  Y23 49 
Y23 H42  H18 H  0 1 N N N N N N -14.309 6.480  43.519 -2.897 -0.392 -2.626 H42  Y23 50 
Y23 H43  H19 H  0 1 N N N N N N -13.422 6.943  42.028 -1.480 -1.437 -2.363 H43  Y23 51 
Y23 H52  H20 H  0 1 N N N N N N -18.388 13.034 48.056 7.365  -2.193 1.012  H52  Y23 52 
Y23 H53  H21 H  0 1 N N N N N N -18.095 15.017 49.690 9.410  -0.793 1.642  H53  Y23 53 
Y23 H54  H23 H  0 1 N N N N N N -15.068 12.119 50.404 6.957  1.430  -0.947 H54  Y23 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y23 C01 C02  DOUB Y N 1  
Y23 C02 C03  SING N N 2  
Y23 C03 N04  SING N N 3  
Y23 N04 C05  SING N N 4  
Y23 C01 C06  SING N N 5  
Y23 C05 C06  SING N N 6  
Y23 C01 C07  SING Y N 7  
Y23 C07 C08  DOUB Y N 8  
Y23 C02 N09  SING Y N 9  
Y23 C08 N09  SING Y N 10 
Y23 C10 C11  SING Y N 11 
Y23 C08 C12  SING Y N 12 
Y23 C11 C12  DOUB Y N 13 
Y23 C07 C13  SING Y N 14 
Y23 C10 C13  DOUB Y N 15 
Y23 N09 C14  SING N N 16 
Y23 C14 C15  SING N N 17 
Y23 C15 C16  DOUB Y N 18 
Y23 C16 C17  SING Y N 19 
Y23 C17 C18  DOUB Y N 20 
Y23 C18 C19  SING Y N 21 
Y23 C15 C20  SING Y N 22 
Y23 C19 C20  DOUB Y N 23 
Y23 C18 C21  SING N N 24 
Y23 C21 N22  TRIP N N 25 
Y23 C10 CL23 SING N N 26 
Y23 N04 C24  SING N N 27 
Y23 C24 C25  SING N N 28 
Y23 C24 O26  DOUB N N 29 
Y23 C25 C27  SING N N 30 
Y23 C27 C28  SING N N 31 
Y23 C28 N29  SING Y N 32 
Y23 N29 C30  SING Y N 33 
Y23 C30 N31  DOUB Y N 34 
Y23 C28 C32  DOUB Y N 35 
Y23 N31 C32  SING Y N 36 
Y23 C05 H35  SING N N 37 
Y23 C05 H36  SING N N 38 
Y23 C06 H38  SING N N 39 
Y23 C06 H37  SING N N 40 
Y23 C11 H39  SING N N 41 
Y23 C13 H41  SING N N 42 
Y23 C16 H44  SING N N 43 
Y23 C17 H45  SING N N 44 
Y23 C19 H46  SING N N 45 
Y23 C20 H47  SING N N 46 
Y23 C25 H48  SING N N 47 
Y23 C25 H49  SING N N 48 
Y23 C27 H51  SING N N 49 
Y23 C27 H50  SING N N 50 
Y23 C03 H34  SING N N 51 
Y23 C03 H33  SING N N 52 
Y23 C12 H40  SING N N 53 
Y23 C14 H42  SING N N 54 
Y23 C14 H43  SING N N 55 
Y23 N29 H52  SING N N 56 
Y23 C30 H53  SING N N 57 
Y23 C32 H54  SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y23 SMILES           ACDLabs              12.01 "N#Cc1ccc(cc1)Cn1c2ccc(Cl)cc2c2CCN(Cc12)C(=O)CCc1cnc[NH]1"                                                                                                              
Y23 InChI            InChI                1.06  "InChI=1S/C25H22ClN5O/c26-19-5-7-23-22(11-19)21-9-10-30(25(32)8-6-20-13-28-16-29-20)15-24(21)31(23)14-18-3-1-17(12-27)2-4-18/h1-5,7,11,13,16H,6,8-10,14-15H2,(H,28,29)" 
Y23 InChIKey         InChI                1.06  WFAGAJXFSDAQQY-UHFFFAOYSA-N                                                                                                                                             
Y23 SMILES_CANONICAL CACTVS               3.385 "Clc1ccc2n(Cc3ccc(cc3)C#N)c4CN(CCc4c2c1)C(=O)CCc5[nH]cnc5"                                                                                                              
Y23 SMILES           CACTVS               3.385 "Clc1ccc2n(Cc3ccc(cc3)C#N)c4CN(CCc4c2c1)C(=O)CCc5[nH]cnc5"                                                                                                              
Y23 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1Cn2c3ccc(cc3c4c2CN(CC4)C(=O)CCc5cnc[nH]5)Cl)C#N"                                                                                                              
Y23 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1Cn2c3ccc(cc3c4c2CN(CC4)C(=O)CCc5cnc[nH]5)Cl)C#N"                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y23 "SYSTEMATIC NAME" ACDLabs              12.01 "4-({6-chloro-2-[3-(1H-imidazol-5-yl)propanoyl]-1,2,3,4-tetrahydro-9H-pyrido[3,4-b]indol-9-yl}methyl)benzonitrile"          
Y23 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[[6-chloranyl-2-[3-(1~{H}-imidazol-5-yl)propanoyl]-3,4-dihydro-1~{H}-pyrido[3,4-b]indol-9-yl]methyl]benzenecarbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y23 "Create component" 2023-06-09 RCSB 
Y23 "Initial release"  2024-12-18 RCSB 
# 
