data_XW3
# 
_chem_comp.id                                    XW3 
_chem_comp.name                                  "8-[(5-azanyl-1,3-dioxan-2-yl)methyl]-6-[2-chloranyl-4-(3-fluoranylpyridin-2-yl)phenyl]-2-(methylamino)pyrido[2,3-d]pyrimidin-7-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H22 Cl F N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-14 
_chem_comp.pdbx_modified_date                    2024-03-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        496.921 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XW3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8R4U 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
XW3 C1   C1  C  0 1 N N N -21.059 -26.869 -25.444 -6.795 3.294  1.109  C1   XW3 1  N N N 
XW3 C3   C2  C  0 1 Y N N -23.431 -27.338 -25.454 -4.718 2.150  0.437  C3   XW3 2  N N N 
XW3 C7   C3  C  0 1 N N N -27.352 -26.241 -26.497 -0.684 1.640  0.919  C7   XW3 3  N N N 
XW3 C8   C4  C  0 1 N N N -27.594 -25.108 -27.170 -0.040 0.727  0.127  C8   XW3 4  N N N 
XW3 C9   C5  C  0 1 N N N -26.455 -24.205 -27.560 -0.805 -0.036 -0.862 C9   XW3 5  N N N 
XW3 C12  C6  C  0 1 N N N -24.074 -23.767 -27.611 -2.884 -0.612 -1.986 C12  XW3 6  N N N 
XW3 C13  C7  C  0 1 N N N -23.459 -24.234 -28.916 -3.392 -1.906 -1.349 C13  XW3 7  N N N 
XW3 C15  C8  C  0 1 N N N -24.010 -25.192 -31.085 -2.656 -3.903 -0.248 C15  XW3 8  N N N 
XW3 C16  C9  C  0 1 N N N -23.343 -24.021 -31.815 -3.574 -3.584 0.937  C16  XW3 9  N N N 
XW3 C20  C10 C  0 1 Y N N -24.907 -25.822 -26.490 -2.786 1.071  -0.204 C20  XW3 10 N N N 
XW3 C22  C11 C  0 1 Y N N -28.973 -24.756 -27.574 1.419  0.513  0.269  C22  XW3 11 N N N 
XW3 C24  C12 C  0 1 Y N N -31.218 -24.085 -26.961 3.272  -0.403 1.490  C24  XW3 12 N N N 
XW3 C27  C13 C  0 1 Y N N -29.344 -24.709 -28.920 2.297  1.033  -0.685 C27  XW3 13 N N N 
XW3 C31  C14 C  0 1 Y N N -34.200 -21.952 -29.679 7.450  -0.306 2.058  C31  XW3 14 N N N 
XW3 C32  C15 C  0 1 Y N N -35.389 -22.622 -29.441 8.290  -0.495 0.976  C32  XW3 15 N N N 
XW3 C33  C16 C  0 1 Y N N -35.308 -23.844 -28.789 7.761  -0.486 -0.307 C33  XW3 16 N N N 
XW3 C34  C17 C  0 1 Y N N -34.070 -24.332 -28.405 6.398  -0.286 -0.459 C34  XW3 17 N N N 
XW3 N2   N1  N  0 1 N N N -22.139 -27.760 -25.062 -6.078 2.324  0.277  N2   XW3 18 N N N 
XW3 N4   N2  N  0 1 Y N N -24.441 -28.154 -25.106 -4.083 2.873  1.352  N4   XW3 19 N N N 
XW3 C5   C18 C  0 1 Y N N -25.685 -27.767 -25.446 -2.784 2.744  1.545  C5   XW3 20 N N N 
XW3 C6   C19 C  0 1 Y N N -25.990 -26.604 -26.133 -2.077 1.822  0.759  C6   XW3 21 N N N 
XW3 O10  O1  O  0 1 N N N -26.689 -23.181 -28.179 -0.240 -0.850 -1.570 O10  XW3 22 N N N 
XW3 N11  N3  N  0 1 N N N -25.166 -24.613 -27.210 -2.132 0.159  -0.992 N11  XW3 23 N N N 
XW3 O14  O2  O  0 1 N N N -24.454 -24.846 -29.760 -2.282 -2.679 -0.887 O14  XW3 24 N N N 
XW3 N17  N4  N  0 1 N N N -22.634 -24.535 -32.970 -4.076 -4.835 1.521  N17  XW3 25 N N N 
XW3 C18  C20 C  0 1 N N N -22.312 -23.415 -30.862 -4.753 -2.742 0.438  C18  XW3 26 N N N 
XW3 O19  O3  O  0 1 N N N -22.864 -23.106 -29.575 -4.245 -1.591 -0.245 O19  XW3 27 N N N 
XW3 N21  N5  N  0 1 Y N N -23.650 -26.192 -26.142 -4.095 1.263  -0.324 N21  XW3 28 N N N 
XW3 C23  C21 C  0 1 Y N N -29.919 -24.443 -26.592 1.916  -0.204 1.358  C23  XW3 29 N N N 
XW3 C25  C22 C  0 1 Y N N -31.587 -24.029 -28.310 4.150  0.112  0.535  C25  XW3 30 N N N 
XW3 C26  C23 C  0 1 Y N N -30.639 -24.335 -29.289 3.654  0.834  -0.551 C26  XW3 31 N N N 
XW3 CL28 CL1 CL 0 0 N N N -28.168 -25.078 -30.131 1.680  1.930  -2.037 CL28 XW3 32 N N N 
XW3 C29  C24 C  0 1 Y N N -32.926 -23.606 -28.697 5.609  -0.102 0.679  C29  XW3 33 N N N 
XW3 N30  N6  N  0 1 Y N N -32.975 -22.414 -29.335 6.157  -0.118 1.887  N30  XW3 34 N N N 
XW3 F35  F1  F  0 1 N N N -34.011 -25.498 -27.765 5.840  -0.269 -1.689 F35  XW3 35 N N N 
XW3 H1   H1  H  0 1 N N N -20.101 -27.283 -25.096 -6.381 4.289  0.946  H1   XW3 36 N N N 
XW3 H2   H2  H  0 1 N N N -21.038 -26.767 -26.539 -7.852 3.292  0.841  H2   XW3 37 N N N 
XW3 H3   H3  H  0 1 N N N -21.220 -25.881 -24.987 -6.686 3.022  2.159  H3   XW3 38 N N N 
XW3 H4   H4  H  0 1 N N N -28.172 -26.888 -26.223 -0.137 2.211  1.654  H4   XW3 39 N N N 
XW3 H5   H5  H  0 1 N N N -23.303 -23.783 -26.827 -2.234 -0.852 -2.827 H5   XW3 40 N N N 
XW3 H6   H6  H  0 1 N N N -24.446 -22.740 -27.739 -3.731 -0.023 -2.337 H6   XW3 41 N N N 
XW3 H7   H7  H  0 1 N N N -22.678 -24.973 -28.683 -3.952 -2.480 -2.088 H7   XW3 42 N N N 
XW3 H8   H8  H  0 1 N N N -24.880 -25.522 -31.672 -1.763 -4.416 0.110  H8   XW3 43 N N N 
XW3 H9   H9  H  0 1 N N N -23.286 -26.016 -31.008 -3.183 -4.540 -0.959 H9   XW3 44 N N N 
XW3 H10  H10 H  0 1 N N N -24.093 -23.269 -32.100 -3.018 -3.025 1.690  H10  XW3 45 N N N 
XW3 H11  H11 H  0 1 N N N -31.945 -23.849 -26.198 3.657  -0.957 2.333  H11  XW3 46 N N N 
XW3 H12  H12 H  0 1 N N N -34.254 -20.994 -30.174 7.859  -0.317 3.057  H12  XW3 47 N N N 
XW3 H13  H13 H  0 1 N N N -36.339 -22.211 -29.750 9.348  -0.647 1.128  H13  XW3 48 N N N 
XW3 H14  H14 H  0 1 N N N -36.204 -24.411 -28.582 8.397  -0.630 -1.168 H14  XW3 49 N N N 
XW3 H15  H15 H  0 1 N N N -22.131 -27.848 -24.066 -6.559 1.805  -0.387 H15  XW3 50 N N N 
XW3 H16  H16 H  0 1 N N N -26.505 -28.410 -25.162 -2.276 3.337  2.291  H16  XW3 51 N N N 
XW3 H17  H17 H  0 1 N N N -22.194 -23.779 -33.455 -4.684 -4.650 2.305  H17  XW3 52 N N N 
XW3 H18  H18 H  0 1 N N N -21.939 -25.188 -32.671 -4.544 -5.397 0.826  H18  XW3 53 N N N 
XW3 H20  H20 H  0 1 N N N -21.490 -24.134 -30.729 -5.361 -3.334 -0.246 H20  XW3 54 N N N 
XW3 H21  H21 H  0 1 N N N -21.921 -22.489 -31.309 -5.359 -2.424 1.286  H21  XW3 55 N N N 
XW3 H22  H22 H  0 1 N N N -29.645 -24.478 -25.548 1.237  -0.603 2.097  H22  XW3 56 N N N 
XW3 H23  H23 H  0 1 N N N -30.907 -24.282 -30.334 4.334  1.235  -1.288 H23  XW3 57 N N N 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XW3 N17  C16 SING N N 1  
XW3 C16  C15 SING N N 2  
XW3 C16  C18 SING N N 3  
XW3 C15  O14 SING N N 4  
XW3 C18  O19 SING N N 5  
XW3 CL28 C27 SING N N 6  
XW3 O14  C13 SING N N 7  
XW3 C31  C32 DOUB Y N 8  
XW3 C31  N30 SING Y N 9  
XW3 O19  C13 SING N N 10 
XW3 C32  C33 SING Y N 11 
XW3 N30  C29 DOUB Y N 12 
XW3 C26  C27 DOUB Y N 13 
XW3 C26  C25 SING Y N 14 
XW3 C27  C22 SING Y N 15 
XW3 C13  C12 SING N N 16 
XW3 C33  C34 DOUB Y N 17 
XW3 C29  C34 SING Y N 18 
XW3 C29  C25 SING N N 19 
XW3 C34  F35 SING N N 20 
XW3 C25  C24 DOUB Y N 21 
XW3 O10  C9  DOUB N N 22 
XW3 C12  N11 SING N N 23 
XW3 C22  C8  SING N N 24 
XW3 C22  C23 DOUB Y N 25 
XW3 C9   N11 SING N N 26 
XW3 C9   C8  SING N N 27 
XW3 N11  C20 SING N N 28 
XW3 C8   C7  DOUB N N 29 
XW3 C24  C23 SING Y N 30 
XW3 C7   C6  SING N N 31 
XW3 C20  N21 DOUB Y N 32 
XW3 C20  C6  SING Y N 33 
XW3 N21  C3  SING Y N 34 
XW3 C6   C5  DOUB Y N 35 
XW3 C3   N4  DOUB Y N 36 
XW3 C3   N2  SING N N 37 
XW3 C5   N4  SING Y N 38 
XW3 C1   N2  SING N N 39 
XW3 C1   H1  SING N N 40 
XW3 C1   H2  SING N N 41 
XW3 C1   H3  SING N N 42 
XW3 C7   H4  SING N N 43 
XW3 C12  H5  SING N N 44 
XW3 C12  H6  SING N N 45 
XW3 C13  H7  SING N N 46 
XW3 C15  H8  SING N N 47 
XW3 C15  H9  SING N N 48 
XW3 C16  H10 SING N N 49 
XW3 C24  H11 SING N N 50 
XW3 C31  H12 SING N N 51 
XW3 C32  H13 SING N N 52 
XW3 C33  H14 SING N N 53 
XW3 N2   H15 SING N N 54 
XW3 C5   H16 SING N N 55 
XW3 N17  H17 SING N N 56 
XW3 N17  H18 SING N N 57 
XW3 C18  H20 SING N N 58 
XW3 C18  H21 SING N N 59 
XW3 C23  H22 SING N N 60 
XW3 C26  H23 SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XW3 InChI            InChI                1.06  "InChI=1S/C24H22ClFN6O3/c1-28-24-30-9-14-7-17(16-5-4-13(8-18(16)25)21-19(26)3-2-6-29-21)23(33)32(22(14)31-24)10-20-34-11-15(27)12-35-20/h2-9,15,20H,10-12,27H2,1H3,(H,28,30,31)/t15-,20-" 
XW3 InChIKey         InChI                1.06  QKNBRNSGPNCARD-SGNKCFNYSA-N                                                                                                                                                               
XW3 SMILES_CANONICAL CACTVS               3.385 "CNc1ncc2C=C(C(=O)N(C[C@H]3OC[C@H](N)CO3)c2n1)c4ccc(cc4Cl)c5ncccc5F"                                                                                                                      
XW3 SMILES           CACTVS               3.385 "CNc1ncc2C=C(C(=O)N(C[CH]3OC[CH](N)CO3)c2n1)c4ccc(cc4Cl)c5ncccc5F"                                                                                                                        
XW3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNc1ncc2c(n1)N(C(=O)C(=C2)c3ccc(cc3Cl)c4c(cccn4)F)CC5OCC(CO5)N"                                                                                                                          
XW3 SMILES           "OpenEye OEToolkits" 2.0.7 "CNc1ncc2c(n1)N(C(=O)C(=C2)c3ccc(cc3Cl)c4c(cccn4)F)CC5OCC(CO5)N"                                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           XW3 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "8-[(5-azanyl-1,3-dioxan-2-yl)methyl]-6-[2-chloranyl-4-(3-fluoranylpyridin-2-yl)phenyl]-2-(methylamino)pyrido[2,3-d]pyrimidin-7-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XW3 "Create component" 2023-11-14 PDBE 
XW3 "Initial release"  2024-03-27 RCSB 
# 
