data_XJ3
#

_chem_comp.id                                   XJ3
_chem_comp.name                                 "N'-[[3-[4-(3,5-dimethyl-1,2-oxazol-4-yl)-5-methyl-6-(oxan-4-ylamino)pyrimidin-2-yl]phenyl]methyl]-N-methyl-ethane-1,2-diamine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H34 N6 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-01-10
_chem_comp.pdbx_modified_date                   2021-11-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       450.576
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XJ3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6IZU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XJ3  C1   C1   C  0  1  N  N  N  15.635  17.025  283.359  -8.772   0.830   2.397  C1   XJ3   1  
XJ3  C3   C2   C  0  1  N  N  N  14.765  18.852  282.018  -6.681   1.302   1.272  C3   XJ3   2  
XJ3  C4   C3   C  0  1  N  N  N  15.311  20.041  281.183  -5.982   1.310  -0.089  C4   XJ3   3  
XJ3  C6   C4   C  0  1  N  N  N  14.562  21.904  282.543  -3.891   1.781  -1.214  C6   XJ3   4  
XJ3  C7   C5   C  0  1  Y  N  N  13.525  23.082  282.543  -2.474   2.249  -1.006  C7   XJ3   5  
XJ3  C8   C6   C  0  1  Y  N  N  12.250  22.865  283.063  -1.478   1.331  -0.739  C8   XJ3   6  
XJ3  C9   C7   C  0  1  Y  N  N  11.327  23.901  283.045  -0.167   1.765  -0.547  C9   XJ3   7  
XJ3  C10  C8   C  0  1  Y  N  N   9.943  23.612  283.665   0.907   0.784  -0.260  C10  XJ3   8  
XJ3  C12  C9   C  0  1  Y  N  N   7.660  23.912  283.704   1.539  -1.414   0.060  C12  XJ3   9  
XJ3  C14  C10  C  0  1  N  N  N   6.584  25.451  282.014  -0.175  -3.187  -0.081  C14  XJ3  10  
XJ3  C15  C11  C  0  1  N  N  N   6.815  26.765  282.599  -0.413  -4.524   0.628  C15  XJ3  11  
XJ3  C16  C12  C  0  1  N  N  N   6.631  27.921  281.609  -1.838  -5.001   0.336  C16  XJ3  12  
XJ3  C18  C13  C  0  1  N  N  N   5.183  26.530  280.240  -1.856  -3.887  -1.788  C18  XJ3  13  
XJ3  C19  C14  C  0  1  N  N  N   5.323  25.393  281.250  -0.432  -3.365  -1.581  C19  XJ3  14  
XJ3  C20  C15  C  0  1  Y  N  N   7.571  23.068  284.823   2.853  -0.998   0.261  C20  XJ3  15  
XJ3  C21  C16  C  0  1  N  N  N   6.217  22.764  285.443   3.944  -1.996   0.552  C21  XJ3  16  
XJ3  C22  C17  C  0  1  Y  N  N   8.773  22.515  285.336   3.136   0.366   0.179  C22  XJ3  17  
XJ3  C23  C18  C  0  1  Y  N  N   8.811  21.564  286.581   4.519   0.860   0.384  C23  XJ3  18  
XJ3  C24  C19  C  0  1  Y  N  N   8.471  21.874  287.881   5.293   1.587  -0.477  C24  XJ3  19  
XJ3  C25  C20  C  0  1  N  N  N   7.934  23.190  288.455   4.911   2.063  -1.855  C25  XJ3  20  
XJ3  C28  C21  C  0  1  Y  N  N   9.249  20.224  286.531   5.353   0.694   1.526  C28  XJ3  21  
XJ3  C29  C22  C  0  1  N  N  N   9.726  19.452  285.297   5.008  -0.033   2.800  C29  XJ3  22  
XJ3  C31  C23  C  0  1  Y  N  N  11.658  25.151  282.515   0.130   3.124  -0.626  C31  XJ3  23  
XJ3  C32  C24  C  0  1  Y  N  N  12.932  25.359  281.988  -0.874   4.033  -0.893  C32  XJ3  24  
XJ3  C33  C25  C  0  1  Y  N  N  13.861  24.321  281.998  -2.172   3.596  -1.089  C33  XJ3  25  
XJ3  N2   N1   N  0  1  N  N  N  15.816  17.812  282.127  -8.069   0.850   1.108  N2   XJ3  26  
XJ3  N05  N2   N  0  1  N  N  N  14.351  21.167  281.275  -4.594   1.761   0.075  N05  XJ3  27  
XJ3  N11  N3   N  0  1  Y  N  N   8.851  24.155  283.136   0.603  -0.505  -0.195  N11  XJ3  28  
XJ3  N13  N4   N  0  1  N  N  N   6.442  24.506  283.118   1.210  -2.759   0.131  N13  XJ3  29  
XJ3  N27  N5   N  0  1  Y  N  N   9.137  19.744  287.773   6.472   1.295   1.250  N27  XJ3  30  
XJ3  N30  N6   N  0  1  Y  N  N   9.919  22.816  284.737   2.146   1.218  -0.080  N30  XJ3  31  
XJ3  O17  O1   O  0  1  N  N  N   5.367  27.836  280.869  -2.020  -5.116  -1.077  O17  XJ3  32  
XJ3  O26  O2   O  0  1  Y  N  N   8.666  20.770  288.567   6.458   1.794   0.149  O26  XJ3  33  
XJ3  H1   H1   H  0  1  N  N  N  16.422  16.259  283.424  -9.797   0.492   2.247  H1   XJ3  34  
XJ3  H2   H2   H  0  1  N  N  N  15.699  17.691  284.232  -8.262   0.150   3.079  H2   XJ3  35  
XJ3  H3   H3   H  0  1  N  N  N  14.649  16.537  283.341  -8.779   1.834   2.823  H3   XJ3  36  
XJ3  H4   H4   H  0  1  N  N  N  14.489  19.204  283.023  -6.156   0.625   1.946  H4   XJ3  37  
XJ3  H5   H5   H  0  1  N  N  N  13.879  18.430  281.522  -6.674   2.309   1.690  H5   XJ3  38  
XJ3  H6   H6   H  0  1  N  N  N  15.423  19.735  280.132  -5.990   0.303  -0.507  H6   XJ3  39  
XJ3  H7   H7   H  0  1  N  N  N  16.288  20.354  281.580  -6.507   1.987  -0.763  H7   XJ3  40  
XJ3  H8   H8   H  0  1  N  N  N  14.386  21.241  283.403  -4.402   2.462  -1.896  H8   XJ3  41  
XJ3  H9   H9   H  0  1  N  N  N  15.588  22.299  282.588  -3.884   0.778  -1.640  H9   XJ3  42  
XJ3  H10  H10  H  0  1  N  N  N  11.984  21.903  283.475  -1.714   0.279  -0.679  H10  XJ3  43  
XJ3  H11  H11  H  0  1  N  N  N   7.429  25.164  281.371  -0.854  -2.435   0.320  H11  XJ3  44  
XJ3  H12  H12  H  0  1  N  N  N   7.845  26.798  282.984   0.301  -5.262   0.263  H12  XJ3  45  
XJ3  H13  H13  H  0  1  N  N  N   6.108  26.904  283.431  -0.284  -4.394   1.703  H13  XJ3  46  
XJ3  H14  H14  H  0  1  N  N  N   7.462  27.904  280.889  -1.998  -5.973   0.803  H14  XJ3  47  
XJ3  H15  H15  H  0  1  N  N  N   6.649  28.869  282.167  -2.552  -4.282   0.737  H15  XJ3  48  
XJ3  H16  H16  H  0  1  N  N  N   4.179  26.488  279.792  -2.570  -3.153  -1.414  H16  XJ3  49  
XJ3  H17  H17  H  0  1  N  N  N   5.941  26.403  279.453  -2.031  -4.056  -2.851  H17  XJ3  50  
XJ3  H18  H18  H  0  1  N  N  N   4.482  25.447  281.957  -0.319  -2.405  -2.086  H18  XJ3  51  
XJ3  H19  H19  H  0  1  N  N  N   5.285  24.436  280.708   0.281  -4.080  -1.991  H19  XJ3  52  
XJ3  H20  H20  H  0  1  N  N  N   5.786  21.873  284.964   4.323  -2.404  -0.385  H20  XJ3  53  
XJ3  H21  H21  H  0  1  N  N  N   6.341  22.578  286.520   4.755  -1.503   1.088  H21  XJ3  54  
XJ3  H22  H22  H  0  1  N  N  N   5.545  23.622  285.294   3.543  -2.804   1.164  H22  XJ3  55  
XJ3  H23  H23  H  0  1  N  N  N   7.737  23.068  289.530   4.448   3.047  -1.785  H23  XJ3  56  
XJ3  H24  H24  H  0  1  N  N  N   8.679  23.986  288.307   5.802   2.124  -2.479  H24  XJ3  57  
XJ3  H25  H25  H  0  1  N  N  N   7.001  23.461  287.940   4.204   1.361  -2.299  H25  XJ3  58  
XJ3  H26  H26  H  0  1  N  N  N   9.971  18.418  285.582   5.375  -1.058   2.744  H26  XJ3  59  
XJ3  H27  H27  H  0  1  N  N  N   8.929  19.444  284.539   5.473   0.474   3.645  H27  XJ3  60  
XJ3  H28  H28  H  0  1  N  N  N  10.621  19.939  284.883   3.925  -0.041   2.932  H28  XJ3  61  
XJ3  H29  H29  H  0  1  N  N  N  10.932  25.950  282.514   1.143   3.466  -0.477  H29  XJ3  62  
XJ3  H30  H30  H  0  1  N  N  N  13.197  26.321  281.574  -0.644   5.086  -0.959  H30  XJ3  63  
XJ3  H31  H31  H  0  1  N  N  N  14.845  24.476  281.582  -2.954   4.311  -1.298  H31  XJ3  64  
XJ3  H32  H32  H  0  1  N  N  N  15.760  17.203  281.336  -8.559   1.424   0.438  H32  XJ3  65  
XJ3  H34  H34  H  0  1  N  N  N  14.492  21.787  280.503  -4.559   2.666   0.521  H34  XJ3  66  
XJ3  H36  H36  H  0  1  N  N  N   5.964  24.984  283.855   1.897  -3.417   0.321  H36  XJ3  67  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XJ3  C18  O17  SING  N  N   1  
XJ3  C18  C19  SING  N  N   2  
XJ3  O17  C16  SING  N  N   3  
XJ3  C4   N05  SING  N  N   4  
XJ3  C4   C3   SING  N  N   5  
XJ3  C19  C14  SING  N  N   6  
XJ3  N05  C6   SING  N  N   7  
XJ3  C16  C15  SING  N  N   8  
XJ3  C32  C33  DOUB  Y  N   9  
XJ3  C32  C31  SING  Y  N  10  
XJ3  C33  C7   SING  Y  N  11  
XJ3  C14  C15  SING  N  N  12  
XJ3  C14  N13  SING  N  N  13  
XJ3  C3   N2   SING  N  N  14  
XJ3  N2   C1   SING  N  N  15  
XJ3  C31  C9   DOUB  Y  N  16  
XJ3  C7   C6   SING  N  N  17  
XJ3  C7   C8   DOUB  Y  N  18  
XJ3  C9   C8   SING  Y  N  19  
XJ3  C9   C10  SING  N  N  20  
XJ3  N13  C12  SING  N  N  21  
XJ3  N11  C10  DOUB  Y  N  22  
XJ3  N11  C12  SING  Y  N  23  
XJ3  C10  N30  SING  Y  N  24  
XJ3  C12  C20  DOUB  Y  N  25  
XJ3  N30  C22  DOUB  Y  N  26  
XJ3  C20  C22  SING  Y  N  27  
XJ3  C20  C21  SING  N  N  28  
XJ3  C29  C28  SING  N  N  29  
XJ3  C22  C23  SING  N  N  30  
XJ3  C28  C23  SING  Y  N  31  
XJ3  C28  N27  DOUB  Y  N  32  
XJ3  C23  C24  DOUB  Y  N  33  
XJ3  N27  O26  SING  Y  N  34  
XJ3  C24  C25  SING  N  N  35  
XJ3  C24  O26  SING  Y  N  36  
XJ3  C1   H1   SING  N  N  37  
XJ3  C1   H2   SING  N  N  38  
XJ3  C1   H3   SING  N  N  39  
XJ3  C3   H4   SING  N  N  40  
XJ3  C3   H5   SING  N  N  41  
XJ3  C4   H6   SING  N  N  42  
XJ3  C4   H7   SING  N  N  43  
XJ3  C6   H8   SING  N  N  44  
XJ3  C6   H9   SING  N  N  45  
XJ3  C8   H10  SING  N  N  46  
XJ3  C14  H11  SING  N  N  47  
XJ3  C15  H12  SING  N  N  48  
XJ3  C15  H13  SING  N  N  49  
XJ3  C16  H14  SING  N  N  50  
XJ3  C16  H15  SING  N  N  51  
XJ3  C18  H16  SING  N  N  52  
XJ3  C18  H17  SING  N  N  53  
XJ3  C19  H18  SING  N  N  54  
XJ3  C19  H19  SING  N  N  55  
XJ3  C21  H20  SING  N  N  56  
XJ3  C21  H21  SING  N  N  57  
XJ3  C21  H22  SING  N  N  58  
XJ3  C25  H23  SING  N  N  59  
XJ3  C25  H24  SING  N  N  60  
XJ3  C25  H25  SING  N  N  61  
XJ3  C29  H26  SING  N  N  62  
XJ3  C29  H27  SING  N  N  63  
XJ3  C29  H28  SING  N  N  64  
XJ3  C31  H29  SING  N  N  65  
XJ3  C32  H30  SING  N  N  66  
XJ3  C33  H31  SING  N  N  67  
XJ3  N2   H32  SING  N  N  68  
XJ3  N05  H34  SING  N  N  69  
XJ3  N13  H36  SING  N  N  70  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XJ3  InChI             InChI                 1.03   "InChI=1S/C25H34N6O2/c1-16-23(22-17(2)31-33-18(22)3)29-25(30-24(16)28-21-8-12-32-13-9-21)20-7-5-6-19(14-20)15-27-11-10-26-4/h5-7,14,21,26-27H,8-13,15H2,1-4H3,(H,28,29,30)"  
XJ3  InChIKey          InChI                 1.03   HUESDICJTDCQLW-UHFFFAOYSA-N  
XJ3  SMILES_CANONICAL  CACTVS                3.385  "CNCCNCc1cccc(c1)c2nc(NC3CCOCC3)c(C)c(n2)c4c(C)onc4C"  
XJ3  SMILES            CACTVS                3.385  "CNCCNCc1cccc(c1)c2nc(NC3CCOCC3)c(C)c(n2)c4c(C)onc4C"  
XJ3  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "Cc1c(nc(nc1NC2CCOCC2)c3cccc(c3)CNCCNC)c4c(noc4C)C"  
XJ3  SMILES            "OpenEye OEToolkits"  2.0.6  "Cc1c(nc(nc1NC2CCOCC2)c3cccc(c3)CNCCNC)c4c(noc4C)C"  
#
_pdbx_chem_comp_identifier.comp_id          XJ3
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "~{N}'-[[3-[4-(3,5-dimethyl-1,2-oxazol-4-yl)-5-methyl-6-(oxan-4-ylamino)pyrimidin-2-yl]phenyl]methyl]-~{N}-methyl-ethane-1,2-diamine"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XJ3  "Create component"  2019-01-10  PDBJ  
XJ3  "Initial release"   2021-11-24  RCSB  
##
