data_XA3
# 
_chem_comp.id                                    XA3 
_chem_comp.name                                  "~{N}-(2-azanyl-5-phenyl-phenyl)-5-(6-methyl-7-oxidanylidene-1~{H}-pyrrolo[2,3-c]pyridin-4-yl)pyridine-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H21 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-06 
_chem_comp.pdbx_modified_date                    2023-06-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        435.477 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XA3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8P9L 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XA3 C1  C1  C 0 1 Y N N -15.771 14.132 -6.455 6.417  0.363  0.982  C1  XA3 1  
XA3 C2  C2  C 0 1 Y N N -16.610 13.045 -6.176 5.021  0.278  0.962  C2  XA3 2  
XA3 C4  C3  C 0 1 Y N N -17.331 14.809 -4.994 5.683  0.412  3.084  C4  XA3 3  
XA3 C5  C4  C 0 1 N N N -16.331 11.759 -6.783 4.342  0.179  -0.337 C5  XA3 4  
XA3 C6  C5  C 0 1 Y N N -17.136 10.540 -6.513 2.867  0.086  -0.413 C6  XA3 5  
XA3 C9  C6  C 0 1 N N N -19.253 6.986  -5.555 -1.319 -0.304 -0.555 C9  XA3 6  
XA3 C10 C7  C 0 1 Y N N -20.220 5.813  -3.613 -3.299 -1.485 0.036  C10 XA3 7  
XA3 N   N1  N 0 1 Y N N -16.240 15.196 -5.721 6.798  0.445  2.302  N   XA3 8  
XA3 C   C8  C 0 1 N N N -14.669 14.044 -7.337 7.117  0.346  -0.240 C   XA3 9  
XA3 O   O1  O 0 1 N N N -13.918 14.970 -7.625 8.334  0.419  -0.240 O   XA3 10 
XA3 C11 C9  C 0 1 Y N N -19.491 5.286  -2.553 -4.064 -0.331 0.065  C11 XA3 11 
XA3 C12 C10 C 0 1 Y N N -19.987 4.194  -1.836 -5.453 -0.420 0.124  C12 XA3 12 
XA3 C13 C11 C 0 1 Y N N -19.219 3.656  -0.689 -6.275 0.814  0.155  C13 XA3 13 
XA3 C14 C12 C 0 1 Y N N -19.864 3.101  0.416  -5.661 2.065  0.118  C14 XA3 14 
XA3 C15 C13 C 0 1 Y N N -19.139 2.662  1.511  -6.431 3.210  0.146  C15 XA3 15 
XA3 C16 C14 C 0 1 Y N N -17.762 2.767  1.521  -7.810 3.118  0.211  C16 XA3 16 
XA3 C17 C15 C 0 1 Y N N -17.109 3.310  0.433  -8.425 1.879  0.248  C17 XA3 17 
XA3 C18 C16 C 0 1 Y N N -17.827 3.744  -0.667 -7.665 0.728  0.215  C18 XA3 18 
XA3 C19 C17 C 0 1 Y N N -21.214 3.651  -2.214 -6.070 -1.670 0.155  C19 XA3 19 
XA3 C20 C18 C 0 1 Y N N -21.932 4.177  -3.271 -5.306 -2.819 0.127  C20 XA3 20 
XA3 C21 C19 C 0 1 Y N N -21.454 5.269  -3.997 -3.922 -2.734 0.067  C21 XA3 21 
XA3 C22 C20 C 0 1 Y N N -17.979 8.388  -7.190 0.748  0.979  -1.060 C22 XA3 22 
XA3 C23 C21 C 0 1 Y N N -17.288 9.552  -7.480 2.122  1.109  -1.012 C23 XA3 23 
XA3 C24 C22 C 0 1 N N N -15.258 11.696 -7.611 5.098  0.174  -1.469 C24 XA3 24 
XA3 C25 C23 C 0 1 N N N -13.325 12.621 -8.796 7.222  0.240  -2.655 C25 XA3 25 
XA3 C3  C24 C 0 1 Y N N -17.591 13.492 -5.248 4.589  0.311  2.301  C3  XA3 26 
XA3 C7  C25 C 0 1 Y N N -17.714 10.308 -5.271 2.199  -1.026 0.107  C7  XA3 27 
XA3 C8  C26 C 0 1 Y N N -18.513 8.246  -5.914 0.152  -0.159 -0.514 C8  XA3 28 
XA3 N1  N2  N 0 1 Y N N -18.390 9.189  -4.962 0.890  -1.113 0.043  N1  XA3 29 
XA3 N2  N3  N 0 1 N N N -19.700 6.948  -4.281 -1.903 -1.400 -0.030 N2  XA3 30 
XA3 N3  N4  N 0 1 N N N -22.178 5.808  -5.044 -3.151 -3.900 0.037  N3  XA3 31 
XA3 N4  N5  N 0 1 N N N -14.465 12.775 -7.895 6.455  0.249  -1.406 N4  XA3 32 
XA3 O1  O2  O 0 1 N N N -19.339 6.047  -6.343 -2.001 0.565  -1.062 O1  XA3 33 
XA3 H1  H1  H 0 1 N N N -17.896 15.442 -4.326 5.677  0.460  4.163  H1  XA3 34 
XA3 H2  H2  H 0 1 N N N -15.843 16.114 -5.719 7.710  0.515  2.623  H2  XA3 35 
XA3 H3  H3  H 0 1 N N N -18.540 5.721  -2.283 -3.584 0.636  0.041  H3  XA3 36 
XA3 H4  H4  H 0 1 N N N -20.940 3.013  0.418  -4.585 2.137  0.068  H4  XA3 37 
XA3 H5  H5  H 0 1 N N N -19.652 2.236  2.360  -5.956 4.179  0.117  H5  XA3 38 
XA3 H6  H6  H 0 1 N N N -17.198 2.426  2.377  -8.408 4.016  0.234  H6  XA3 39 
XA3 H7  H7  H 0 1 N N N -16.032 3.396  0.440  -9.501 1.813  0.299  H7  XA3 40 
XA3 H8  H8  H 0 1 N N N -17.304 4.155  -1.518 -8.146 -0.239 0.239  H8  XA3 41 
XA3 H9  H9  H 0 1 N N N -21.610 2.805  -1.672 -7.147 -1.739 0.201  H9  XA3 42 
XA3 H10 H10 H 0 1 N N N -22.880 3.735  -3.540 -5.786 -3.786 0.151  H10 XA3 43 
XA3 H11 H11 H 0 1 N N N -18.100 7.613  -7.933 0.141  1.750  -1.510 H11 XA3 44 
XA3 H12 H12 H 0 1 N N N -16.864 9.694  -8.463 2.611  1.978  -1.427 H12 XA3 45 
XA3 H13 H13 H 0 1 N N N -15.018 10.748 -8.069 4.613  0.102  -2.432 H13 XA3 46 
XA3 H14 H14 H 0 1 N N N -12.809 13.587 -8.904 7.357  1.263  -3.005 H14 XA3 47 
XA3 H15 H15 H 0 1 N N N -12.628 11.878 -8.381 8.196  -0.216 -2.479 H15 XA3 48 
XA3 H16 H16 H 0 1 N N N -13.679 12.282 -9.781 6.682  -0.334 -3.408 H16 XA3 49 
XA3 H17 H17 H 0 1 N N N -18.390 12.902 -4.824 3.565  0.265  2.642  H17 XA3 50 
XA3 H18 H18 H 0 1 N N N -17.614 11.070 -4.512 2.765  -1.823 0.567  H18 XA3 51 
XA3 H19 H19 H 0 1 N N N -19.660 7.801  -3.761 -1.356 -2.129 0.302  H19 XA3 52 
XA3 H20 H20 H 0 1 N N N -23.024 5.289  -5.167 -2.184 -3.841 -0.005 H20 XA3 53 
XA3 H21 H21 H 0 1 N N N -22.399 6.762  -4.840 -3.584 -4.768 0.059  H21 XA3 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XA3 C25 N4  SING N N 1  
XA3 N4  C24 SING N N 2  
XA3 N4  C   SING N N 3  
XA3 O   C   DOUB N N 4  
XA3 C24 C5  DOUB N N 5  
XA3 C23 C22 DOUB Y N 6  
XA3 C23 C6  SING Y N 7  
XA3 C   C1  SING N N 8  
XA3 C22 C8  SING Y N 9  
XA3 C5  C6  SING N N 10 
XA3 C5  C2  SING N N 11 
XA3 C6  C7  DOUB Y N 12 
XA3 C1  C2  DOUB Y N 13 
XA3 C1  N   SING Y N 14 
XA3 O1  C9  DOUB N N 15 
XA3 C2  C3  SING Y N 16 
XA3 C8  C9  SING N N 17 
XA3 C8  N1  DOUB Y N 18 
XA3 N   C4  SING Y N 19 
XA3 C9  N2  SING N N 20 
XA3 C7  N1  SING Y N 21 
XA3 C3  C4  DOUB Y N 22 
XA3 N3  C21 SING N N 23 
XA3 N2  C10 SING N N 24 
XA3 C21 C10 DOUB Y N 25 
XA3 C21 C20 SING Y N 26 
XA3 C10 C11 SING Y N 27 
XA3 C20 C19 DOUB Y N 28 
XA3 C11 C12 DOUB Y N 29 
XA3 C19 C12 SING Y N 30 
XA3 C12 C13 SING N N 31 
XA3 C13 C18 DOUB Y N 32 
XA3 C13 C14 SING Y N 33 
XA3 C18 C17 SING Y N 34 
XA3 C14 C15 DOUB Y N 35 
XA3 C17 C16 DOUB Y N 36 
XA3 C15 C16 SING Y N 37 
XA3 C4  H1  SING N N 38 
XA3 N   H2  SING N N 39 
XA3 C11 H3  SING N N 40 
XA3 C14 H4  SING N N 41 
XA3 C15 H5  SING N N 42 
XA3 C16 H6  SING N N 43 
XA3 C17 H7  SING N N 44 
XA3 C18 H8  SING N N 45 
XA3 C19 H9  SING N N 46 
XA3 C20 H10 SING N N 47 
XA3 C22 H11 SING N N 48 
XA3 C23 H12 SING N N 49 
XA3 C24 H13 SING N N 50 
XA3 C25 H14 SING N N 51 
XA3 C25 H15 SING N N 52 
XA3 C25 H16 SING N N 53 
XA3 C3  H17 SING N N 54 
XA3 C7  H18 SING N N 55 
XA3 N2  H19 SING N N 56 
XA3 N3  H20 SING N N 57 
XA3 N3  H21 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XA3 InChI            InChI                1.06  "InChI=1S/C26H21N5O2/c1-31-15-20(19-11-12-28-24(19)26(31)33)18-8-10-22(29-14-18)25(32)30-23-13-17(7-9-21(23)27)16-5-3-2-4-6-16/h2-15,28H,27H2,1H3,(H,30,32)" 
XA3 InChIKey         InChI                1.06  PIMIVMVEIPRLIZ-UHFFFAOYSA-N                                                                                                                                  
XA3 SMILES_CANONICAL CACTVS               3.385 "CN1C=C(c2ccc(nc2)C(=O)Nc3cc(ccc3N)c4ccccc4)c5cc[nH]c5C1=O"                                                                                                  
XA3 SMILES           CACTVS               3.385 "CN1C=C(c2ccc(nc2)C(=O)Nc3cc(ccc3N)c4ccccc4)c5cc[nH]c5C1=O"                                                                                                  
XA3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1C=C(c2cc[nH]c2C1=O)c3ccc(nc3)C(=O)Nc4cc(ccc4N)c5ccccc5"                                                                                                  
XA3 SMILES           "OpenEye OEToolkits" 2.0.7 "CN1C=C(c2cc[nH]c2C1=O)c3ccc(nc3)C(=O)Nc4cc(ccc4N)c5ccccc5"                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           XA3 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-(2-azanyl-5-phenyl-phenyl)-5-(6-methyl-7-oxidanylidene-1~{H}-pyrrolo[2,3-c]pyridin-4-yl)pyridine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XA3 "Create component" 2023-06-06 PDBE 
XA3 "Initial release"  2023-07-05 RCSB 
# 
