data_WU3
# 
_chem_comp.id                                    WU3 
_chem_comp.name                                  "(2S)-2-dodecylsulfanylpropanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H30 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-13 
_chem_comp.pdbx_modified_date                    2024-10-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        274.462 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WU3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QT1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WU3 C11 C1  C 0 1 N N N N N N 3.347  13.621 8.826  7.201   -0.189 -0.160 C11 WU3 1  
WU3 C12 C2  C 0 1 N N S N N N 2.874  15.000 8.466  5.888   0.550  -0.194 C12 WU3 2  
WU3 C13 C3  C 0 1 N N N N N N 3.933  16.056 8.702  5.873   1.614  0.905  C13 WU3 3  
WU3 C21 C4  C 0 1 N N N N N N -1.268 22.979 8.225  -4.442  0.459  -0.126 C21 WU3 4  
WU3 C16 C5  C 0 1 N N N N N N 0.244  16.823 7.297  1.799   -0.442 0.049  C16 WU3 5  
WU3 C17 C6  C 0 1 N N N N N N -0.498 17.953 7.993  0.554   0.427  -0.142 C17 WU3 6  
WU3 C18 C7  C 0 1 N N N N N N -0.089 19.338 7.512  -0.700  -0.426 0.058  C18 WU3 7  
WU3 C19 C8  C 0 1 N N N N N N -0.997 20.457 7.979  -1.944  0.443  -0.134 C19 WU3 8  
WU3 C20 C9  C 0 1 N N N N N N -0.339 21.826 7.913  -3.198  -0.411 0.065  C20 WU3 9  
WU3 C15 C10 C 0 1 N N N N N N 0.141  15.486 8.012  3.053   0.412  -0.150 C15 WU3 10 
WU3 C23 C11 C 0 1 N N N N N N 0.273  24.265 9.753  -6.941  0.474  -0.118 C23 WU3 11 
WU3 C22 C12 C 0 1 N N N N N N -0.537 24.284 8.471  -5.696  -0.395 0.073  C22 WU3 12 
WU3 C24 C13 C 0 1 N N N N N N 1.315  25.355 9.864  -8.195  -0.379 0.081  C24 WU3 13 
WU3 C25 C14 C 0 1 N N N N N N 2.147  25.204 11.119 -9.439  0.490  -0.110 C25 WU3 14 
WU3 C26 C15 C 0 1 N N N N N N 3.278  26.200 11.216 -10.693 -0.364 0.089  C26 WU3 15 
WU3 O27 O1  O 0 1 N N N N N N 3.029  13.085 9.887  7.270   -1.273 0.371  O27 WU3 16 
WU3 S14 S1  S 0 1 N N N N N N 1.337  15.386 9.369  4.528   -0.619 0.077  S14 WU3 17 
WU3 H2  H2  H 0 1 N N N N N N 2.597  15.012 7.401  5.767   1.030  -1.166 H2  WU3 18 
WU3 H3  H3  H 0 1 N N N N N N 3.536  17.043 8.423  5.995   1.135  1.877  H3  WU3 19 
WU3 H4  H4  H 0 1 N N N N N N 4.215  16.061 9.765  6.691   2.317  0.742  H4  WU3 20 
WU3 H5  H5  H 0 1 N N N N N N 4.818  15.831 8.089  4.924   2.149  0.880  H5  WU3 21 
WU3 H6  H6  H 0 1 N N N N N N -1.953 23.116 7.375  -4.435  1.269  0.603  H6  WU3 22 
WU3 H7  H7  H 0 1 N N N N N N -1.847 22.728 9.126  -4.443  0.876  -1.133 H7  WU3 23 
WU3 H8  H8  H 0 1 N N N N N N -0.172 16.707 6.285  1.799   -0.859 1.056  H8  WU3 24 
WU3 H9  H9  H 0 1 N N N N N N 1.307  17.098 7.228  1.791   -1.252 -0.679 H9  WU3 25 
WU3 H10 H10 H 0 1 N N N N N N -1.575 17.826 7.811  0.562   1.238  0.587  H10 WU3 26 
WU3 H11 H11 H 0 1 N N N N N N -0.298 17.887 9.073  0.554   0.845  -1.149 H11 WU3 27 
WU3 H12 H12 H 0 1 N N N N N N -0.087 19.333 6.412  -0.707  -1.237 -0.671 H12 WU3 28 
WU3 H13 H13 H 0 1 N N N N N N 0.927  19.544 7.880  -0.699  -0.843 1.064  H13 WU3 29 
WU3 H14 H14 H 0 1 N N N N N N -1.894 20.469 7.342  -1.937  1.253  0.595  H14 WU3 30 
WU3 H15 H15 H 0 1 N N N N N N -1.289 20.259 9.021  -1.945  0.860  -1.141 H15 WU3 31 
WU3 H16 H16 H 0 1 N N N N N N 0.489  21.845 8.637  -3.197  -0.828 1.072  H16 WU3 32 
WU3 H17 H17 H 0 1 N N N N N N 0.058  21.969 6.897  -3.205  -1.221 -0.663 H17 WU3 33 
WU3 H18 H18 H 0 1 N N N N N N -0.875 15.372 8.418  3.052   0.829  -1.157 H18 WU3 34 
WU3 H19 H19 H 0 1 N N N N N N 0.342  14.677 7.294  3.060   1.222  0.579  H19 WU3 35 
WU3 H20 H20 H 0 1 N N N N N N -0.423 24.370 10.598 -6.933  1.285  0.611  H20 WU3 36 
WU3 H21 H21 H 0 1 N N N N N N 0.786  23.294 9.819  -6.942  0.891  -1.125 H21 WU3 37 
WU3 H22 H22 H 0 1 N N N N N N 0.143  24.472 7.627  -5.704  -1.205 -0.655 H22 WU3 38 
WU3 H23 H23 H 0 1 N N N N N N -1.277 25.096 8.533  -5.696  -0.812 1.081  H23 WU3 39 
WU3 H24 H24 H 0 1 N N N N N N 1.978  25.305 8.988  -8.202  -1.190 -0.647 H24 WU3 40 
WU3 H25 H25 H 0 1 N N N N N N 0.809  26.332 9.886  -8.194  -0.797 1.089  H25 WU3 41 
WU3 H26 H26 H 0 1 N N N N N N 1.490  25.338 11.991 -9.432  1.300  0.619  H26 WU3 42 
WU3 H27 H27 H 0 1 N N N N N N 2.574  24.190 11.134 -9.440  0.907  -1.117 H27 WU3 43 
WU3 H28 H28 H 0 1 N N N N N N 3.837  26.032 12.148 -10.701 -1.174 -0.640 H28 WU3 44 
WU3 H29 H29 H 0 1 N N N N N N 3.953  26.073 10.357 -10.693 -0.781 1.096  H29 WU3 45 
WU3 H30 H30 H 0 1 N N N N N N 2.869  27.221 11.213 -11.580 0.255  -0.047 H30 WU3 46 
WU3 O1  O2  O 0 1 N N N N N N 4.135  13.037 7.924  8.292   0.353  -0.723 O1  WU3 47 
WU3 H1  H1  H 0 1 N N N N N N 4.391  12.177 8.236  9.110   -0.160 -0.679 H1  WU3 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WU3 C16 C17 SING N N 1  
WU3 C16 C15 SING N N 2  
WU3 C18 C19 SING N N 3  
WU3 C18 C17 SING N N 4  
WU3 C20 C19 SING N N 5  
WU3 C20 C21 SING N N 6  
WU3 C15 S14 SING N N 7  
WU3 C21 C22 SING N N 8  
WU3 C12 C13 SING N N 9  
WU3 C12 C11 SING N N 10 
WU3 C12 S14 SING N N 11 
WU3 C22 C23 SING N N 12 
WU3 C11 O27 DOUB N N 13 
WU3 C23 C24 SING N N 14 
WU3 C24 C25 SING N N 15 
WU3 C25 C26 SING N N 16 
WU3 C12 H2  SING N N 17 
WU3 C13 H3  SING N N 18 
WU3 C13 H4  SING N N 19 
WU3 C13 H5  SING N N 20 
WU3 C21 H6  SING N N 21 
WU3 C21 H7  SING N N 22 
WU3 C16 H8  SING N N 23 
WU3 C16 H9  SING N N 24 
WU3 C17 H10 SING N N 25 
WU3 C17 H11 SING N N 26 
WU3 C18 H12 SING N N 27 
WU3 C18 H13 SING N N 28 
WU3 C19 H14 SING N N 29 
WU3 C19 H15 SING N N 30 
WU3 C20 H16 SING N N 31 
WU3 C20 H17 SING N N 32 
WU3 C15 H18 SING N N 33 
WU3 C15 H19 SING N N 34 
WU3 C23 H20 SING N N 35 
WU3 C23 H21 SING N N 36 
WU3 C22 H22 SING N N 37 
WU3 C22 H23 SING N N 38 
WU3 C24 H24 SING N N 39 
WU3 C24 H25 SING N N 40 
WU3 C25 H26 SING N N 41 
WU3 C25 H27 SING N N 42 
WU3 C26 H28 SING N N 43 
WU3 C26 H29 SING N N 44 
WU3 C26 H30 SING N N 45 
WU3 C11 O1  SING N N 46 
WU3 O1  H1  SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WU3 InChI            InChI                1.06  "InChI=1S/C15H30O2S/c1-3-4-5-6-7-8-9-10-11-12-13-18-14(2)15(16)17/h14H,3-13H2,1-2H3,(H,16,17)/t14-/m0/s1" 
WU3 InChIKey         InChI                1.06  YXNWKYMLMYBZSA-AWEZNQCLSA-N                                                                               
WU3 SMILES_CANONICAL CACTVS               3.385 "CCCCCCCCCCCCS[C@@H](C)C(O)=O"                                                                            
WU3 SMILES           CACTVS               3.385 "CCCCCCCCCCCCS[CH](C)C(O)=O"                                                                              
WU3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCS[C@@H](C)C(=O)O"                                                                            
WU3 SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCSC(C)C(=O)O"                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           WU3 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-dodecylsulfanylpropanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WU3 "Create component"   2023-10-13 PDBE 
WU3 "Modify coordinates" 2023-10-16 PDBE 
WU3 "Modify PCM"         2024-09-27 PDBE 
WU3 "Initial release"    2024-10-23 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            WU3 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C11 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
