data_VK3
#

_chem_comp.id                                   VK3
_chem_comp.name                                 MENADIONE
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H8 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "VITAMIN K3; 2-METHYL-1,4-NAPHTHALENEDIONE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       172.180
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VK3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2QR2
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VK3  C1K   C1K   C  0  1  N  N  N  34.006  14.994  33.258   1.677  -0.000   0.275  C1K   VK3   1  
VK3  O1K   O1K   O  0  1  N  N  N  33.215  14.480  34.059   2.854  -0.002  -0.025  O1K   VK3   2  
VK3  C2K   C2K   C  0  1  N  N  N  33.423  15.860  32.227   1.275   0.000   1.694  C2K   VK3   3  
VK3  C3K   C3K   C  0  1  N  N  N  34.233  16.448  31.282  -0.017   0.002   2.044  C3K   VK3   4  
VK3  C4K   C4K   C  0  1  N  N  N  35.699  16.281  31.319  -1.079  -0.002   1.020  C4K   VK3   5  
VK3  O4K   O4K   O  0  1  N  N  N  36.312  16.870  30.414  -2.247  -0.005   1.353  O4K   VK3   6  
VK3  C5K   C5K   C  0  1  Y  N  N  36.261  15.514  32.408  -0.716   0.002  -0.413  C5K   VK3   7  
VK3  C6K   C6K   C  0  1  Y  N  N  37.620  15.439  32.522  -1.697   0.002  -1.397  C6K   VK3   8  
VK3  C7K   C7K   C  0  1  Y  N  N  38.159  14.745  33.569  -1.331   0.001  -2.734  C7K   VK3   9  
VK3  C8K   C8K   C  0  1  Y  N  N  37.373  14.145  34.510   0.002  -0.000  -3.095  C8K   VK3  10  
VK3  C9K   C9K   C  0  1  Y  N  N  36.015  14.221  34.421   0.992  -0.000  -2.125  C9K   VK3  11  
VK3  C10   C10   C  0  1  Y  N  N  35.444  14.908  33.377   0.641   0.000  -0.780  C10   VK3  12  
VK3  C11   C11   C  0  1  N  N  N  33.589  17.300  30.166  -0.392   0.003   3.503  C11   VK3  13  
VK3  H2K1  1H2K  H  0  0  N  N  N  32.343  16.075  32.160   2.035  -0.000   2.462  H2K1  VK3  14  
VK3  H6K1  1H6K  H  0  0  N  N  N  38.271  15.931  31.780  -2.741   0.004  -1.121  H6K1  VK3  15  
VK3  H7K1  1H7K  H  0  0  N  N  N  39.255  14.667  33.656  -2.093   0.002  -3.499  H7K1  VK3  16  
VK3  H8K1  1H8K  H  0  0  N  N  N  37.837  13.596  35.346   0.275  -0.000  -4.140  H8K1  VK3  17  
VK3  H9K1  1H9K  H  0  0  N  N  N  35.386  13.732  35.184   2.033  -0.001  -2.412  H9K1  VK3  18  
VK3  H111  1H11  H  0  0  N  N  N  34.245  17.776  29.400   0.512   0.002   4.111  H111  VK3  19  
VK3  H112  2H11  H  0  0  N  N  N  32.818  16.685  29.645  -0.979   0.894   3.727  H112  VK3  20  
VK3  H113  3H11  H  0  0  N  N  N  32.956  18.088  30.636  -0.982  -0.885   3.728  H113  VK3  21  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VK3  C1K  O1K   DOUB  N  N   1  
VK3  C1K  C2K   SING  N  N   2  
VK3  C1K  C10   SING  N  N   3  
VK3  C2K  C3K   DOUB  N  N   4  
VK3  C2K  H2K1  SING  N  N   5  
VK3  C3K  C4K   SING  N  N   6  
VK3  C3K  C11   SING  N  N   7  
VK3  C4K  O4K   DOUB  N  N   8  
VK3  C4K  C5K   SING  N  N   9  
VK3  C5K  C6K   DOUB  Y  N  10  
VK3  C5K  C10   SING  Y  N  11  
VK3  C6K  C7K   SING  Y  N  12  
VK3  C6K  H6K1  SING  N  N  13  
VK3  C7K  C8K   DOUB  Y  N  14  
VK3  C7K  H7K1  SING  N  N  15  
VK3  C8K  C9K   SING  Y  N  16  
VK3  C8K  H8K1  SING  N  N  17  
VK3  C9K  C10   DOUB  Y  N  18  
VK3  C9K  H9K1  SING  N  N  19  
VK3  C11  H111  SING  N  N  20  
VK3  C11  H112  SING  N  N  21  
VK3  C11  H113  SING  N  N  22  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VK3  SMILES            ACDLabs               10.04  "O=C2c1c(cccc1)C(=O)C(=C2)C"  
VK3  SMILES_CANONICAL  CACTVS                3.341  "CC1=CC(=O)c2ccccc2C1=O"  
VK3  SMILES            CACTVS                3.341  "CC1=CC(=O)c2ccccc2C1=O"  
VK3  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC1=CC(=O)c2ccccc2C1=O"  
VK3  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1=CC(=O)c2ccccc2C1=O"  
VK3  InChI             InChI                 1.03   "InChI=1S/C11H8O2/c1-7-6-10(12)8-4-2-3-5-9(8)11(7)13/h2-6H,1H3"  
VK3  InChIKey          InChI                 1.03   MJVAVZPDRWSRRC-UHFFFAOYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VK3  "SYSTEMATIC NAME"  ACDLabs               10.04  "2-methylnaphthalene-1,4-dione"  
VK3  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "2-methylnaphthalene-1,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VK3  "Create component"   1999-07-08  RCSB  
VK3  "Modify descriptor"  2011-06-04  RCSB  
VK3  "Modify synonyms"    2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  VK3  "VITAMIN K3"                     ?  ?  
2  VK3  "2-METHYL-1,4-NAPHTHALENEDIONE"  ?  ?  
##
